Wall clock time and date at job start Tue Mar 31 2020 01:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47041 * 320.21535 * 3 2 1 5 5 C 1.37093 * 120.00259 * 263.43977 * 4 3 2 6 6 H 1.08001 * 120.00312 * 202.39003 * 5 4 3 7 7 C 1.38953 * 119.99799 * 22.39165 * 5 4 3 8 8 N 1.31413 * 120.00014 * 6.90501 * 7 5 4 9 9 Si 1.86803 * 119.99918 * 186.90654 * 7 5 4 10 10 H 1.48504 * 109.46772 * 89.99793 * 9 7 5 11 11 H 1.48494 * 109.47119 * 210.00016 * 9 7 5 12 12 H 1.48504 * 109.47134 * 330.00009 * 9 7 5 13 13 C 1.34782 * 119.99632 * 83.44530 * 4 3 2 14 14 O 1.21293 * 119.99524 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99917 * 359.97438 * 13 4 3 16 16 H 1.08998 * 109.58524 * 9.60527 * 15 13 4 17 17 C 1.53197 * 109.58640 * 249.17373 * 15 13 4 18 18 C 1.53043 * 109.30919 * 185.58087 * 17 15 13 19 19 C 1.53041 * 109.53851 * 61.36704 * 18 17 15 20 20 C 1.53191 * 109.31395 * 298.63420 * 19 18 17 21 21 N 1.46927 * 109.58151 * 129.88891 * 15 13 4 22 22 C 1.34776 * 120.63433 * 353.36866 * 21 15 13 23 23 C 1.50698 * 120.00154 * 175.13562 * 22 21 15 24 24 O 1.21285 * 119.99832 * 355.13921 * 22 21 15 25 25 H 4.40639 * 5.51411 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.46922 * 200.22200 * 3 2 1 27 27 H 1.08994 * 109.47218 * 80.21752 * 3 2 1 28 28 H 0.96998 * 119.99620 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.49715 * 65.62873 * 17 15 13 30 30 H 1.08998 * 109.49572 * 305.52941 * 17 15 13 31 31 H 1.08997 * 109.46251 * 301.34520 * 18 17 15 32 32 H 1.08999 * 109.45849 * 181.38485 * 18 17 15 33 33 H 1.09004 * 109.49593 * 58.58605 * 19 18 17 34 34 H 1.09001 * 109.49453 * 178.67981 * 19 18 17 35 35 H 1.08995 * 109.58956 * 174.42575 * 20 19 18 36 36 H 1.09002 * 109.58084 * 294.70383 * 20 19 18 37 37 H 1.09004 * 109.47177 * 5.74514 * 23 22 21 38 38 H 1.09002 * 109.46924 * 125.74745 * 23 22 21 39 39 H 1.09008 * 109.47082 * 245.74440 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0606 0.8839 5 6 3.4910 -0.7676 2.1749 6 1 4.1684 -1.4175 2.7089 7 6 2.9805 0.3655 2.7963 8 7 2.0542 1.0814 2.1993 9 14 3.6109 0.8712 4.4805 10 1 4.7708 1.7847 4.3210 11 1 2.5309 1.5676 5.2247 12 1 4.0322 -0.3368 5.2346 13 6 3.2343 -2.3249 0.4277 14 8 3.6385 -3.2036 1.1596 15 6 2.8423 -2.6470 -0.9913 16 1 2.6692 -1.7221 -1.5415 17 6 1.5662 -3.4948 -0.9918 18 6 1.2515 -3.9348 -2.4234 19 6 2.4007 -4.7914 -2.9599 20 6 3.6861 -3.9584 -2.9817 21 7 3.9178 -3.4110 -1.6380 22 6 5.0948 -3.6057 -1.0109 23 6 6.1473 -4.4824 -1.6390 24 8 5.3068 -3.0752 0.0590 25 1 -1.0499 -0.0001 0.0003 26 1 3.0088 0.9652 0.3552 27 1 3.0094 -0.1738 -1.0127 28 1 1.6976 1.8722 2.6333 29 1 0.7371 -2.9043 -0.6020 30 1 1.7136 -4.3742 -0.3649 31 1 1.1288 -3.0550 -3.0550 32 1 0.3305 -4.5176 -2.4299 33 1 2.5400 -5.6586 -2.3145 34 1 2.1653 -5.1238 -3.9710 35 1 4.5264 -4.5905 -3.2687 36 1 3.5810 -3.1431 -3.6976 37 1 5.8217 -4.7849 -2.6343 38 1 7.0831 -3.9286 -1.7155 39 1 6.2986 -5.3678 -1.0214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281603804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:56 Heat of formation + Delta-G solvation = 29.365214 kcal Electronic energy + Delta-G solvation = -23179.023428 eV Core-core repulsion = 19897.252547 eV Total energy + Delta-G solvation = -3281.770881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.26453 -37.73580 -36.85704 -34.87278 -32.69747 -32.11241 -31.18483 -30.87621 -29.06836 -26.47631 -25.42163 -24.29163 -23.08812 -20.75448 -19.82819 -18.07345 -17.63307 -17.00917 -16.26245 -15.96929 -15.41009 -14.95327 -14.48621 -14.25040 -13.91874 -13.75914 -13.72116 -13.34387 -12.99036 -12.70654 -12.47608 -12.16255 -12.05957 -11.82823 -11.40303 -11.24443 -11.13354 -10.93437 -10.83723 -10.65322 -10.48571 -10.33232 -10.15207 -9.33849 -9.19426 -8.83216 -8.56164 -8.29766 -7.93514 -7.48920 -6.11801 -3.71340 3.19666 3.24680 3.33712 3.34555 3.41194 3.85958 4.08323 4.28929 4.33533 4.74162 4.79261 4.96307 5.11476 5.12108 5.24018 5.33006 5.43584 5.45258 5.54261 5.61783 5.65804 5.74241 5.85754 5.93185 6.00584 6.06671 6.10371 6.22136 6.27438 6.45084 6.59147 6.91808 6.99408 7.16951 7.72859 7.88928 8.27905 8.64002 8.85224 8.88656 9.38757 9.56192 10.18114 10.88330 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.007058 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.574196 B = 3966.295199 C = 4906.304866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.102 4.102 3 C 0.230 3.770 4 N -0.447 5.447 5 C -0.288 4.288 6 H 0.100 0.900 7 C 0.022 3.978 8 N -0.884 5.884 9 Si 0.926 3.074 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.271 1.271 13 C 0.481 3.519 14 O -0.548 6.548 15 C 0.128 3.872 16 H 0.080 0.920 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.136 4.136 20 C 0.106 3.894 21 N -0.610 5.610 22 C 0.487 3.513 23 C -0.173 4.173 24 O -0.477 6.477 25 H 0.197 0.803 26 H 0.120 0.880 27 H 0.052 0.948 28 H 0.265 0.735 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 -6.925 -14.118 15.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.103 4.103 3 C 0.106 3.894 4 N -0.168 5.168 5 C -0.416 4.416 6 H 0.117 0.883 7 C -0.179 4.179 8 N -0.525 5.525 9 Si 0.754 3.246 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.196 1.196 13 C 0.268 3.732 14 O -0.429 6.429 15 C 0.022 3.978 16 H 0.098 0.902 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.174 4.174 20 C -0.017 4.017 21 N -0.348 5.348 22 C 0.274 3.726 23 C -0.233 4.233 24 O -0.348 6.348 25 H 0.214 0.786 26 H 0.137 0.863 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.469 -6.904 -13.035 14.758 hybrid contribution -0.251 0.447 0.729 0.891 sum 0.218 -6.457 -12.306 13.899 Atomic orbital electron populations 1.24215 0.95304 1.04025 1.05848 1.23346 0.94410 0.97076 0.95514 1.18358 0.84009 0.95576 0.91419 1.43448 1.57493 1.04293 1.11524 1.19665 1.24627 1.08823 0.88478 0.88256 1.25318 0.95642 0.97481 0.99417 1.69932 1.26574 1.17652 1.38360 0.85914 0.77970 0.78669 0.82066 1.20588 1.21179 1.19607 1.19385 0.82755 0.83263 0.87772 1.90528 1.47676 1.46047 1.58633 1.21264 0.87372 0.94434 0.94766 0.90190 1.21729 0.96497 1.00482 0.96894 1.21502 0.97800 0.99650 0.96418 1.21937 0.95290 0.98887 1.01274 1.21801 0.98265 0.97541 0.84086 1.47954 1.13796 1.55874 1.17194 1.20688 0.83140 0.83254 0.85515 1.22005 0.98640 1.00855 1.01755 1.91032 1.77016 1.47210 1.19533 0.78554 0.86252 0.93069 0.92455 0.90478 0.91040 0.91781 0.91706 0.91453 0.91064 0.89293 0.91704 0.90603 0.89495 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.74 19.25 29.55 0.57 -5.17 16 2 C -0.10 -2.33 11.24 -37.12 -0.42 -2.75 16 3 C 0.23 5.41 4.78 -6.83 -0.03 5.38 16 4 N -0.45 -12.05 2.60 -117.93 -0.31 -12.36 16 5 C -0.29 -8.46 9.31 -14.93 -0.14 -8.60 16 6 H 0.10 3.13 7.39 -52.49 -0.39 2.75 16 7 C 0.02 0.62 5.18 -17.47 -0.09 0.53 16 8 N -0.88 -24.10 8.94 55.50 0.50 -23.60 16 9 Si 0.93 21.99 29.56 -169.99 -5.02 16.97 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.48 12.41 4.66 -10.98 -0.05 12.36 16 14 O -0.55 -16.23 13.46 -20.13 -0.27 -16.50 16 15 C 0.13 2.52 2.81 -68.75 -0.19 2.32 16 16 H 0.08 1.51 5.39 -51.93 -0.28 1.23 16 17 C -0.12 -2.01 5.35 -26.61 -0.14 -2.16 16 18 C -0.12 -1.42 5.88 -26.69 -0.16 -1.58 16 19 C -0.14 -1.42 6.08 -26.61 -0.16 -1.58 16 20 C 0.11 1.19 6.36 -3.71 -0.02 1.17 16 21 N -0.61 -10.33 2.97 -166.53 -0.49 -10.83 16 22 C 0.49 9.28 7.43 -10.99 -0.08 9.20 16 23 C -0.17 -2.20 10.12 36.00 0.36 -1.84 16 24 O -0.48 -12.09 12.32 -20.12 -0.25 -12.34 16 25 H 0.20 3.34 7.80 -54.10 -0.42 2.92 16 26 H 0.12 3.01 6.28 -51.93 -0.33 2.68 16 27 H 0.05 1.05 6.17 -51.93 -0.32 0.73 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.78 5.04 -51.93 -0.26 0.51 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.70 5.11 -51.93 -0.27 0.43 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -35.98 314.40 -6.87 -42.85 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.20 Total: 3.78 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -0.56 Total: 7.29 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.31 Total: -46.79 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.52 Total: -28.84 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.98 -6.87 -42.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281603804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.216 kcal (2) G-P(sol) polarization free energy of solvation -35.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds