Wall clock time and date at job start Tue Mar 31 2020 01:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47041 * 320.21535 * 3 2 1 5 5 C 1.37093 * 120.00259 * 263.43977 * 4 3 2 6 6 H 1.08001 * 120.00312 * 202.39003 * 5 4 3 7 7 C 1.38953 * 119.99799 * 22.39165 * 5 4 3 8 8 N 1.31413 * 120.00014 * 6.90501 * 7 5 4 9 9 Si 1.86803 * 119.99918 * 186.90654 * 7 5 4 10 10 H 1.48504 * 109.46772 * 89.99793 * 9 7 5 11 11 H 1.48494 * 109.47119 * 210.00016 * 9 7 5 12 12 H 1.48504 * 109.47134 * 330.00009 * 9 7 5 13 13 C 1.34782 * 119.99632 * 83.44530 * 4 3 2 14 14 O 1.21293 * 119.99524 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99917 * 359.97438 * 13 4 3 16 16 H 1.08998 * 109.58524 * 9.60527 * 15 13 4 17 17 C 1.53197 * 109.58640 * 249.17373 * 15 13 4 18 18 C 1.53043 * 109.30919 * 185.58087 * 17 15 13 19 19 C 1.53041 * 109.53851 * 61.36704 * 18 17 15 20 20 C 1.53191 * 109.31395 * 298.63420 * 19 18 17 21 21 N 1.46927 * 109.58151 * 129.88891 * 15 13 4 22 22 C 1.34776 * 120.63433 * 353.36866 * 21 15 13 23 23 C 1.50698 * 120.00154 * 175.13562 * 22 21 15 24 24 O 1.21285 * 119.99832 * 355.13921 * 22 21 15 25 25 H 4.40639 * 5.51411 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.46922 * 200.22200 * 3 2 1 27 27 H 1.08994 * 109.47218 * 80.21752 * 3 2 1 28 28 H 0.96998 * 119.99620 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.49715 * 65.62873 * 17 15 13 30 30 H 1.08998 * 109.49572 * 305.52941 * 17 15 13 31 31 H 1.08997 * 109.46251 * 301.34520 * 18 17 15 32 32 H 1.08999 * 109.45849 * 181.38485 * 18 17 15 33 33 H 1.09004 * 109.49593 * 58.58605 * 19 18 17 34 34 H 1.09001 * 109.49453 * 178.67981 * 19 18 17 35 35 H 1.08995 * 109.58956 * 174.42575 * 20 19 18 36 36 H 1.09002 * 109.58084 * 294.70383 * 20 19 18 37 37 H 1.09004 * 109.47177 * 5.74514 * 23 22 21 38 38 H 1.09002 * 109.46924 * 125.74745 * 23 22 21 39 39 H 1.09008 * 109.47082 * 245.74440 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0606 0.8839 5 6 3.4910 -0.7676 2.1749 6 1 4.1684 -1.4175 2.7089 7 6 2.9805 0.3655 2.7963 8 7 2.0542 1.0814 2.1993 9 14 3.6109 0.8712 4.4805 10 1 4.7708 1.7847 4.3210 11 1 2.5309 1.5676 5.2247 12 1 4.0322 -0.3368 5.2346 13 6 3.2343 -2.3249 0.4277 14 8 3.6385 -3.2036 1.1596 15 6 2.8423 -2.6470 -0.9913 16 1 2.6692 -1.7221 -1.5415 17 6 1.5662 -3.4948 -0.9918 18 6 1.2515 -3.9348 -2.4234 19 6 2.4007 -4.7914 -2.9599 20 6 3.6861 -3.9584 -2.9817 21 7 3.9178 -3.4110 -1.6380 22 6 5.0948 -3.6057 -1.0109 23 6 6.1473 -4.4824 -1.6390 24 8 5.3068 -3.0752 0.0590 25 1 -1.0499 -0.0001 0.0003 26 1 3.0088 0.9652 0.3552 27 1 3.0094 -0.1738 -1.0127 28 1 1.6976 1.8722 2.6333 29 1 0.7371 -2.9043 -0.6020 30 1 1.7136 -4.3742 -0.3649 31 1 1.1288 -3.0550 -3.0550 32 1 0.3305 -4.5176 -2.4299 33 1 2.5400 -5.6586 -2.3145 34 1 2.1653 -5.1238 -3.9710 35 1 4.5264 -4.5905 -3.2687 36 1 3.5810 -3.1431 -3.6976 37 1 5.8217 -4.7849 -2.6343 38 1 7.0831 -3.9286 -1.7155 39 1 6.2986 -5.3678 -1.0214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281603804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:55 Heat of formation + Delta-G solvation = 5.441814 kcal Electronic energy + Delta-G solvation = -23180.060825 eV Core-core repulsion = 19897.252547 eV Total energy + Delta-G solvation = -3282.808278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.79240 -39.53737 -38.20590 -36.88232 -34.12140 -33.89360 -32.96226 -32.37383 -30.19727 -28.37976 -27.03453 -25.83098 -24.47692 -22.01159 -21.36878 -19.70072 -19.37133 -18.67195 -18.11850 -17.54669 -16.87906 -16.52363 -16.15203 -15.81172 -15.57192 -15.18453 -14.97105 -14.69405 -14.35527 -14.29014 -14.12942 -13.82608 -13.53772 -13.26914 -12.94702 -12.83872 -12.75382 -12.46417 -12.35862 -12.18114 -11.95660 -11.69946 -11.52908 -11.24425 -11.00371 -10.58618 -10.33023 -10.01478 -9.67904 -9.38332 -8.23033 -5.91170 1.34281 1.35905 1.48470 1.81291 1.87209 2.07845 2.31306 2.39780 2.53468 3.13070 3.13625 3.78320 3.79243 3.88058 3.99176 4.02825 4.11876 4.21676 4.29194 4.36846 4.55986 4.65405 4.69277 4.78281 4.86201 4.93490 5.03987 5.08481 5.10920 5.16849 5.24440 5.46190 5.46234 5.47179 5.61104 6.15042 6.54795 6.59536 7.16201 7.24533 7.46766 7.52717 8.19252 8.73674 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.007058 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.574196 B = 3966.295199 C = 4906.304866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.148 4.148 3 C 0.236 3.764 4 N -0.465 5.465 5 C -0.329 4.329 6 H 0.058 0.942 7 C -0.005 4.005 8 N -0.886 5.886 9 Si 0.986 3.014 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.285 1.285 13 C 0.472 3.528 14 O -0.600 6.600 15 C 0.136 3.864 16 H 0.090 0.910 17 C -0.112 4.112 18 C -0.109 4.109 19 C -0.131 4.131 20 C 0.096 3.904 21 N -0.609 5.609 22 C 0.469 3.531 23 C -0.158 4.158 24 O -0.556 6.556 25 H 0.236 0.764 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.269 0.731 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 -7.314 -17.252 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.149 4.149 3 C 0.114 3.886 4 N -0.185 5.185 5 C -0.458 4.458 6 H 0.076 0.924 7 C -0.205 4.205 8 N -0.525 5.525 9 Si 0.810 3.190 10 H -0.192 1.192 11 H -0.195 1.195 12 H -0.211 1.211 13 C 0.261 3.739 14 O -0.484 6.484 15 C 0.028 3.972 16 H 0.107 0.893 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.169 4.169 20 C -0.024 4.024 21 N -0.346 5.346 22 C 0.259 3.741 23 C -0.217 4.217 24 O -0.433 6.433 25 H 0.252 0.748 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.139 0.861 38 H 0.115 0.885 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.719 -7.288 -16.264 17.836 hybrid contribution 0.055 0.554 1.667 1.758 sum -0.664 -6.734 -14.596 16.089 Atomic orbital electron populations 1.25094 0.96165 1.01675 1.03543 1.23392 0.94747 0.99197 0.97601 1.18246 0.85019 0.93510 0.91828 1.43655 1.57956 1.05682 1.11230 1.19411 1.26144 1.09846 0.90360 0.92408 1.25957 0.95512 0.96625 1.02448 1.70047 1.26069 1.17305 1.39072 0.85057 0.78193 0.77835 0.77902 1.19213 1.19458 1.21091 1.20406 0.81014 0.82341 0.90110 1.90469 1.49574 1.47503 1.60804 1.21055 0.89265 0.95925 0.90914 0.89270 1.21702 0.94536 0.98508 1.00308 1.21519 0.99538 1.00953 0.92643 1.21962 0.93776 0.97779 1.03373 1.22309 1.00178 0.98946 0.81005 1.48201 1.12371 1.54961 1.19019 1.21920 0.84427 0.82923 0.84825 1.21984 0.96796 0.99478 1.03452 1.91004 1.78755 1.50379 1.23159 0.74776 0.88558 0.90527 0.92052 0.92082 0.93890 0.90152 0.89814 0.92538 0.86657 0.86061 0.89296 0.86139 0.88525 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.87 19.25 74.32 1.43 -8.44 16 2 C -0.15 -6.76 11.24 31.12 0.35 -6.41 16 3 C 0.24 11.51 4.78 84.57 0.40 11.91 16 4 N -0.46 -26.53 2.60 -645.41 -1.68 -28.21 16 5 C -0.33 -20.70 9.31 84.04 0.78 -19.92 16 6 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 7 C 0.00 -0.27 5.18 84.93 0.44 0.17 16 8 N -0.89 -48.96 8.94 21.66 0.19 -48.77 16 9 Si 0.99 46.50 29.56 68.60 2.03 48.53 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 13 C 0.47 25.82 4.66 87.66 0.41 26.23 16 14 O -0.60 -38.37 13.46 21.48 0.29 -38.08 16 15 C 0.14 5.39 2.81 44.23 0.12 5.51 16 16 H 0.09 3.33 5.39 -2.39 -0.01 3.32 16 17 C -0.11 -3.82 5.35 30.67 0.16 -3.65 16 18 C -0.11 -2.30 5.88 30.62 0.18 -2.12 16 19 C -0.13 -2.14 6.08 30.67 0.19 -1.96 16 20 C 0.10 1.74 6.36 86.36 0.55 2.29 16 21 N -0.61 -20.03 2.97 -799.17 -2.38 -22.40 16 22 C 0.47 18.10 7.43 87.66 0.65 18.75 16 23 C -0.16 -3.71 10.12 71.24 0.72 -2.99 16 24 O -0.56 -30.08 12.32 21.50 0.26 -29.81 16 25 H 0.24 7.16 7.80 -4.42 -0.03 7.12 16 26 H 0.10 5.05 6.28 -2.39 -0.01 5.04 16 27 H 0.08 3.20 6.17 -2.39 -0.01 3.19 16 28 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.12 1.42 5.04 -2.39 -0.01 1.41 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.12 1.64 5.11 -2.39 -0.01 1.63 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -88.06 314.40 6.16 -81.90 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 1.05 Total: 17.47 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 6.39 Total: 19.37 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -3.86 Total: -99.37 kcal Atomic # 8 Polarization: -68.45 SS G_CDS: 0.55 Total: -67.90 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -88.06 6.16 -81.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281603804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.338 kcal (2) G-P(sol) polarization free energy of solvation -88.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds