Wall clock time and date at job start Tue Mar 31 2020 01:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99993 * 2 1 4 4 C 1.53001 * 109.47132 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47443 * 64.99848 * 4 3 2 6 6 C 1.46891 * 111.00384 * 188.95484 * 5 4 3 7 7 N 1.36598 * 110.99858 * 64.99561 * 5 4 3 8 8 C 1.34781 * 119.99917 * 240.00075 * 7 5 4 9 9 O 1.21542 * 120.00415 * 0.02562 * 8 7 5 10 10 C 1.47886 * 119.99598 * 180.02562 * 8 7 5 11 11 C 1.39915 * 120.03143 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.36223 * 180.02562 * 11 10 8 13 13 C 1.37745 * 120.41285 * 0.02562 * 12 11 10 14 14 C 1.40745 * 120.04067 * 359.97438 * 13 12 11 15 15 C 1.41439 * 120.18018 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99853 * 24.38666 * 15 14 13 17 17 C 1.39937 * 120.00015 * 204.38540 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.84583 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84043 * 17 15 14 20 20 H 1.48505 * 109.46643 * 60.00420 * 19 17 15 21 21 H 1.48494 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47088 * 300.00333 * 19 17 15 23 23 C 1.38995 * 120.02525 * 180.02562 * 10 8 7 24 24 H 1.09001 * 109.47322 * 300.00096 * 1 2 3 25 25 H 1.08996 * 109.47087 * 60.00812 * 1 2 3 26 26 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47302 * 59.99832 * 3 2 1 28 28 H 1.08997 * 109.46818 * 299.99542 * 3 2 1 29 29 H 1.09003 * 109.47160 * 304.99470 * 4 3 2 30 30 H 1.09003 * 109.47296 * 184.99438 * 4 3 2 31 31 H 1.09007 * 109.47213 * 296.04314 * 6 5 4 32 32 H 1.09004 * 109.47486 * 56.04117 * 6 5 4 33 33 H 1.09000 * 109.47860 * 176.04297 * 6 5 4 34 34 H 0.96999 * 120.00391 * 60.00837 * 7 5 4 35 35 H 1.08009 * 119.81570 * 359.97438 * 11 10 8 36 36 H 1.08010 * 119.79275 * 180.02562 * 12 11 10 37 37 H 1.08002 * 119.98213 * 179.97438 * 13 12 11 38 38 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.20307 * 359.70165 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5622 -1.2543 6 6 5.4092 0.2358 -1.2040 7 7 3.6957 1.3633 -2.3241 8 6 2.8894 0.9157 -3.3070 9 8 2.4129 -0.2005 -3.2412 10 6 2.5844 1.7828 -4.4655 11 6 3.1321 3.0681 -4.5416 12 6 2.8509 3.8851 -5.6218 13 6 2.0284 3.4435 -6.6346 14 6 1.4682 2.1537 -6.5755 15 6 0.6236 1.6971 -7.6142 16 1 0.7043 2.1241 -8.6028 17 6 -0.3165 0.6920 -7.3607 18 7 -0.6656 0.4182 -6.1299 19 14 -1.0732 -0.2585 -8.7796 20 1 -0.0014 -0.9528 -9.5376 21 1 -2.0328 -1.2598 -8.2488 22 1 -1.7872 0.6817 -9.6804 23 6 1.7524 1.3221 -5.4791 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8508 0.5686 0.8428 30 1 3.9785 2.1766 0.0901 31 1 5.9886 1.1549 -1.1149 32 1 5.6063 -0.4028 -0.3429 33 1 5.6952 -0.2868 -2.1168 34 1 4.0758 2.2542 -2.3766 35 1 3.7773 3.4245 -3.7521 36 1 3.2791 4.8755 -5.6714 37 1 1.8132 4.0874 -7.4746 38 1 -1.3169 -0.2787 -5.9542 39 1 1.3305 0.3292 -5.4266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288149674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:45 Heat of formation + Delta-G solvation = -23.220217 kcal Electronic energy + Delta-G solvation = -21832.802592 eV Core-core repulsion = 18548.751436 eV Total energy + Delta-G solvation = -3284.051157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.58361 -37.85391 -37.07088 -36.12786 -33.74954 -31.84351 -30.18763 -29.53456 -29.33935 -26.17937 -25.41206 -24.64586 -22.83456 -21.39227 -20.82990 -19.59918 -17.81831 -17.00905 -16.26004 -16.18733 -15.65337 -15.18490 -14.81322 -14.70910 -14.51823 -13.86360 -13.54816 -13.28406 -13.10554 -12.79741 -12.61235 -12.47760 -12.28630 -11.71650 -11.65054 -11.50610 -11.15009 -11.07644 -10.83039 -10.74857 -10.50181 -9.97973 -9.70261 -9.37071 -9.20087 -8.93253 -8.74402 -8.52017 -7.63284 -7.52395 -6.79693 -4.41203 2.25845 2.82832 3.08429 3.10071 3.12450 3.17514 3.91645 3.96507 4.03166 4.50243 4.66231 5.05521 5.30646 5.32599 5.38612 5.47234 5.50993 5.57622 5.61446 5.71240 5.77135 5.88310 5.93034 5.99399 6.06732 6.26439 6.70946 6.84559 6.98081 7.01240 7.21163 7.38254 7.44311 7.69238 7.75094 7.79818 7.93778 8.10703 8.21922 8.51024 8.80698 8.83845 9.27249 10.14844 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.005283 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.048335 B = 5298.336859 C = 6170.745732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.369 6.369 3 C 0.068 3.932 4 C 0.040 3.960 5 N -0.288 5.288 6 C 0.009 3.991 7 N -0.590 5.590 8 C 0.577 3.423 9 O -0.509 6.509 10 C -0.122 4.122 11 C -0.222 4.222 12 C -0.096 4.096 13 C -0.214 4.214 14 C 0.100 3.900 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.074 3.926 18 N -0.781 5.781 19 Si 0.910 3.090 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.091 4.091 24 H 0.031 0.969 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.029 0.971 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.376 0.624 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.285 0.715 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.601 2.457 10.173 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.287 6.287 3 C -0.009 4.009 4 C -0.088 4.088 5 N -0.104 5.104 6 C -0.139 4.139 7 N -0.339 5.339 8 C 0.366 3.634 9 O -0.382 6.382 10 C -0.127 4.127 11 C -0.242 4.242 12 C -0.115 4.115 13 C -0.234 4.234 14 C 0.097 3.903 15 C -0.488 4.488 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.405 5.405 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.190 1.190 23 C -0.112 4.112 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.216 0.784 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.914 0.868 10.294 11.440 hybrid contribution 0.145 1.137 -0.266 1.177 sum 5.059 2.005 10.028 11.410 Atomic orbital electron populations 1.22679 0.81526 1.02568 0.99448 1.87976 1.19063 1.26468 1.95182 1.22406 0.92751 0.85893 0.99886 1.22633 0.95077 0.98471 0.92663 1.62782 1.16751 1.34985 0.95932 1.22878 0.87179 1.00119 1.03757 1.45539 1.52920 1.15911 1.19576 1.18702 0.76751 0.86828 0.81072 1.90710 1.49790 1.20231 1.77473 1.19451 1.03147 0.94616 0.95468 1.20319 1.08022 0.95470 1.00408 1.20418 0.98706 0.97542 0.94814 1.21081 1.05736 0.96404 1.00168 1.17590 0.90536 0.90002 0.92143 1.19561 1.15000 1.17020 0.97260 0.90106 1.25964 0.95865 0.96082 0.96668 1.69775 1.24437 1.25613 1.20703 0.86326 0.79195 0.79573 0.81446 1.18692 1.20201 1.18995 1.21621 0.95842 1.00557 0.93133 0.95026 0.93782 0.89858 0.93462 0.92937 0.88903 0.92953 0.95292 0.90262 0.90583 0.78408 0.89524 0.88998 0.88654 0.90335 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.63 16 2 O -0.37 -6.43 10.65 -35.23 -0.38 -6.81 16 3 C 0.07 1.00 6.09 37.16 0.23 1.23 16 4 C 0.04 0.51 5.57 -3.82 -0.02 0.49 16 5 N -0.29 -4.60 4.52 -121.13 -0.55 -5.15 16 6 C 0.01 0.11 9.98 60.06 0.60 0.71 16 7 N -0.59 -10.33 3.97 30.54 0.12 -10.20 16 8 C 0.58 12.98 7.75 -12.31 -0.10 12.88 16 9 O -0.51 -13.41 16.66 5.33 0.09 -13.32 16 10 C -0.12 -2.89 5.87 -105.04 -0.62 -3.50 16 11 C -0.22 -4.63 9.55 -38.92 -0.37 -5.01 16 12 C -0.10 -2.04 10.01 -39.73 -0.40 -2.44 16 13 C -0.21 -5.05 9.78 -38.82 -0.38 -5.43 16 14 C 0.10 2.63 5.57 -106.87 -0.60 2.04 16 15 C -0.46 -12.03 9.05 -37.73 -0.34 -12.37 16 16 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 17 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 18 N -0.78 -20.63 10.95 55.55 0.61 -20.03 16 19 Si 0.91 18.78 29.60 -169.99 -5.03 13.75 16 20 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 23 C -0.09 -2.44 8.23 -38.44 -0.32 -2.75 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.89 7.48 -51.93 -0.39 0.50 16 29 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.82 8.07 -51.93 -0.42 0.41 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.38 5.63 6.85 -185.16 -1.27 4.37 16 35 H 0.09 1.49 6.38 -52.48 -0.33 1.16 16 36 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.29 6.96 8.30 -40.82 -0.34 6.63 16 39 H 0.13 3.89 5.74 -52.48 -0.30 3.59 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -31.27 333.13 -7.88 -39.16 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.48 Total: 8.35 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -1.29 Total: -10.76 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.18 Total: -35.38 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.29 Total: -20.13 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.27 -7.88 -39.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288149674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.936 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds