Wall clock time and date at job start Tue Mar 31 2020 01:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99993 * 2 1 4 4 C 1.53001 * 109.47132 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47443 * 64.99848 * 4 3 2 6 6 C 1.46891 * 111.00384 * 188.95484 * 5 4 3 7 7 N 1.36598 * 110.99858 * 64.99561 * 5 4 3 8 8 C 1.34781 * 119.99917 * 240.00075 * 7 5 4 9 9 O 1.21542 * 120.00415 * 0.02562 * 8 7 5 10 10 C 1.47886 * 119.99598 * 180.02562 * 8 7 5 11 11 C 1.39915 * 120.03143 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.36223 * 180.02562 * 11 10 8 13 13 C 1.37745 * 120.41285 * 0.02562 * 12 11 10 14 14 C 1.40745 * 120.04067 * 359.97438 * 13 12 11 15 15 C 1.41439 * 120.18018 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99853 * 24.38666 * 15 14 13 17 17 C 1.39937 * 120.00015 * 204.38540 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.84583 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84043 * 17 15 14 20 20 H 1.48505 * 109.46643 * 60.00420 * 19 17 15 21 21 H 1.48494 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47088 * 300.00333 * 19 17 15 23 23 C 1.38995 * 120.02525 * 180.02562 * 10 8 7 24 24 H 1.09001 * 109.47322 * 300.00096 * 1 2 3 25 25 H 1.08996 * 109.47087 * 60.00812 * 1 2 3 26 26 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47302 * 59.99832 * 3 2 1 28 28 H 1.08997 * 109.46818 * 299.99542 * 3 2 1 29 29 H 1.09003 * 109.47160 * 304.99470 * 4 3 2 30 30 H 1.09003 * 109.47296 * 184.99438 * 4 3 2 31 31 H 1.09007 * 109.47213 * 296.04314 * 6 5 4 32 32 H 1.09004 * 109.47486 * 56.04117 * 6 5 4 33 33 H 1.09000 * 109.47860 * 176.04297 * 6 5 4 34 34 H 0.96999 * 120.00391 * 60.00837 * 7 5 4 35 35 H 1.08009 * 119.81570 * 359.97438 * 11 10 8 36 36 H 1.08010 * 119.79275 * 180.02562 * 12 11 10 37 37 H 1.08002 * 119.98213 * 179.97438 * 13 12 11 38 38 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.20307 * 359.70165 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5622 -1.2543 6 6 5.4092 0.2358 -1.2040 7 7 3.6957 1.3633 -2.3241 8 6 2.8894 0.9157 -3.3070 9 8 2.4129 -0.2005 -3.2412 10 6 2.5844 1.7828 -4.4655 11 6 3.1321 3.0681 -4.5416 12 6 2.8509 3.8851 -5.6218 13 6 2.0284 3.4435 -6.6346 14 6 1.4682 2.1537 -6.5755 15 6 0.6236 1.6971 -7.6142 16 1 0.7043 2.1241 -8.6028 17 6 -0.3165 0.6920 -7.3607 18 7 -0.6656 0.4182 -6.1299 19 14 -1.0732 -0.2585 -8.7796 20 1 -0.0014 -0.9528 -9.5376 21 1 -2.0328 -1.2598 -8.2488 22 1 -1.7872 0.6817 -9.6804 23 6 1.7524 1.3221 -5.4791 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8508 0.5686 0.8428 30 1 3.9785 2.1766 0.0901 31 1 5.9886 1.1549 -1.1149 32 1 5.6063 -0.4028 -0.3429 33 1 5.6952 -0.2868 -2.1168 34 1 4.0758 2.2542 -2.3766 35 1 3.7773 3.4245 -3.7521 36 1 3.2791 4.8755 -5.6714 37 1 1.8132 4.0874 -7.4746 38 1 -1.3169 -0.2787 -5.9542 39 1 1.3305 0.3292 -5.4266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288149674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:44 Heat of formation + Delta-G solvation = -44.535880 kcal Electronic energy + Delta-G solvation = -21833.726909 eV Core-core repulsion = 18548.751436 eV Total energy + Delta-G solvation = -3284.975473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11652 -39.36578 -38.58018 -37.66845 -35.60790 -33.37475 -31.71229 -31.25920 -30.75118 -27.36970 -27.22840 -25.96179 -24.29233 -22.93839 -22.47617 -21.27704 -19.58209 -18.41452 -17.73065 -17.40151 -17.09124 -16.94948 -16.47283 -16.00341 -15.89251 -15.49002 -15.10632 -14.93021 -14.51425 -14.45519 -14.24503 -13.68118 -13.47208 -13.23978 -12.96503 -12.83333 -12.79702 -12.60533 -12.52155 -12.20455 -11.96163 -11.85839 -11.51564 -11.05695 -10.70861 -10.58568 -10.25551 -9.65603 -9.48303 -9.38342 -8.65880 -6.37450 0.42082 1.02123 1.36593 1.48434 1.51208 1.78496 2.16732 2.21645 2.81226 2.91540 3.36909 3.71396 4.00843 4.04685 4.26253 4.33143 4.41191 4.44285 4.48067 4.50188 4.54067 4.55993 4.60749 4.80336 4.84522 4.90656 4.94491 5.09088 5.19795 5.31955 5.52056 5.82984 5.86396 5.92564 6.05807 6.25318 6.28816 6.33180 6.53503 6.71665 6.88521 6.95446 7.70514 8.30411 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.005283 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.048335 B = 5298.336859 C = 6170.745732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.398 6.398 3 C 0.060 3.940 4 C 0.042 3.958 5 N -0.326 5.326 6 C 0.011 3.989 7 N -0.567 5.567 8 C 0.576 3.424 9 O -0.561 6.561 10 C -0.132 4.132 11 C -0.200 4.200 12 C -0.094 4.094 13 C -0.218 4.218 14 C 0.068 3.932 15 C -0.497 4.497 16 H 0.085 0.915 17 C 0.030 3.970 18 N -0.823 5.823 19 Si 0.982 3.018 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.251 1.251 23 C -0.129 4.129 24 H 0.065 0.935 25 H 0.016 0.984 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.021 0.979 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.392 0.608 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.286 0.714 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.500 4.442 11.663 14.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.317 6.317 3 C -0.016 4.016 4 C -0.085 4.085 5 N -0.144 5.144 6 C -0.136 4.136 7 N -0.314 5.314 8 C 0.366 3.634 9 O -0.438 6.438 10 C -0.137 4.137 11 C -0.219 4.219 12 C -0.112 4.112 13 C -0.238 4.238 14 C 0.066 3.934 15 C -0.527 4.527 16 H 0.103 0.897 17 C -0.185 4.185 18 N -0.449 5.449 19 Si 0.802 3.198 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.175 1.175 23 C -0.150 4.150 24 H 0.083 0.917 25 H 0.034 0.966 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.039 0.961 29 H 0.133 0.867 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.234 0.766 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.862 2.917 11.812 13.968 hybrid contribution -0.284 0.656 -0.555 0.905 sum 6.578 3.573 11.257 13.518 Atomic orbital electron populations 1.22739 0.80854 1.03045 0.99635 1.87930 1.20086 1.28385 1.95301 1.22643 0.94226 0.84848 0.99929 1.22759 0.93597 1.00639 0.91511 1.62724 1.19351 1.35995 0.96330 1.22894 0.85241 1.01665 1.03820 1.45038 1.50969 1.16405 1.19006 1.18581 0.77067 0.85973 0.81776 1.90680 1.52096 1.22304 1.78692 1.19724 1.02595 0.96150 0.95228 1.20822 1.06400 0.93590 1.01122 1.20911 0.97360 0.99403 0.93497 1.21399 1.05543 0.95470 1.01408 1.17932 0.91546 0.91401 0.92505 1.19846 1.16260 1.18911 0.97644 0.89719 1.26851 0.96004 0.96550 0.99115 1.69885 1.25534 1.26538 1.22900 0.85258 0.78294 0.78205 0.78042 1.18539 1.19744 1.17511 1.21407 0.98498 0.99708 0.95392 0.91691 0.96567 0.89434 0.90096 0.96076 0.86698 0.89505 0.92397 0.87978 0.92608 0.76596 0.84801 0.84314 0.87324 0.90341 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 11.01 113.37 1.25 2.26 16 2 O -0.40 -13.79 10.65 -148.98 -1.59 -15.38 16 3 C 0.06 1.68 6.09 71.98 0.44 2.12 16 4 C 0.04 0.94 5.57 86.30 0.48 1.42 16 5 N -0.33 -9.76 4.52 -537.14 -2.43 -12.19 16 6 C 0.01 0.24 9.98 127.69 1.27 1.52 16 7 N -0.57 -18.86 3.97 -175.58 -0.70 -19.55 16 8 C 0.58 26.38 7.75 86.80 0.67 27.06 16 9 O -0.56 -31.09 16.66 -3.85 -0.06 -31.16 16 10 C -0.13 -6.34 5.87 -20.13 -0.12 -6.45 16 11 C -0.20 -7.78 9.55 22.70 0.22 -7.57 16 12 C -0.09 -3.67 10.01 22.17 0.22 -3.45 16 13 C -0.22 -10.18 9.78 22.77 0.22 -9.95 16 14 C 0.07 3.74 5.57 -21.32 -0.12 3.62 16 15 C -0.50 -27.25 9.05 23.47 0.21 -27.04 16 16 H 0.08 4.35 7.91 -2.91 -0.02 4.33 16 17 C 0.03 1.59 5.14 85.25 0.44 2.02 16 18 N -0.82 -46.53 10.95 21.82 0.24 -46.29 16 19 Si 0.98 40.08 29.60 68.60 2.03 42.11 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 22 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 23 C -0.13 -7.28 8.23 23.01 0.19 -7.09 16 24 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.02 0.71 7.48 -2.39 -0.02 0.69 16 29 H 0.11 2.10 8.03 -2.39 -0.02 2.09 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.10 1.77 8.07 -2.38 -0.02 1.75 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.39 10.31 6.85 -215.50 -1.48 8.84 16 35 H 0.13 3.91 6.38 -2.91 -0.02 3.89 16 36 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 38 H 0.29 15.00 8.30 -92.71 -0.77 14.23 16 39 H 0.10 6.13 5.74 -2.91 -0.02 6.12 16 Total: -1.00 -74.67 333.13 2.45 -72.22 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.42 Total: 31.77 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 5.38 Total: -21.53 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -2.89 Total: -78.03 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -1.65 Total: -46.53 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -74.67 2.45 -72.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288149674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.685 kcal (2) G-P(sol) polarization free energy of solvation -74.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds