Wall clock time and date at job start Tue Mar 31 2020 00:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.38706 * 119.98444 * 359.72203 * 4 3 2 6 6 C 1.38113 * 120.02040 * 179.76665 * 5 4 3 7 7 C 1.38858 * 119.97934 * 0.51256 * 6 5 4 8 8 N 1.39940 * 120.01762 * 179.72275 * 7 6 5 9 9 N 1.40091 * 120.00139 * 0.02562 * 8 7 6 10 10 C 1.34773 * 120.00237 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00104 * 359.97438 * 10 9 8 12 12 C 1.50706 * 120.00224 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.46819 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46819 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99898 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99975 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00037 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99752 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47312 * 89.99755 * 18 16 14 20 20 H 1.48509 * 109.46969 * 209.99450 * 18 16 14 21 21 H 1.48493 * 109.47393 * 329.99214 * 18 16 14 22 22 C 1.38868 * 119.96232 * 359.73953 * 7 6 5 23 23 C 1.38104 * 119.97993 * 0.02562 * 22 7 6 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07993 * 119.98782 * 0.02562 * 5 4 3 30 30 H 1.07998 * 120.00767 * 180.23176 * 6 5 4 31 31 H 0.97004 * 119.99782 * 180.02562 * 8 7 6 32 32 H 0.97004 * 120.00085 * 0.02562 * 9 8 7 33 33 H 1.08999 * 109.46576 * 299.99678 * 12 10 9 34 34 H 1.08997 * 109.46958 * 60.00071 * 12 10 9 35 35 H 1.08991 * 109.47608 * 299.99635 * 13 12 10 36 36 H 1.08997 * 109.47123 * 60.00386 * 13 12 10 37 37 H 0.97001 * 119.99997 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.00669 * 179.97438 * 22 7 6 39 39 H 1.08002 * 119.98723 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1991 0.4254 0.0069 6 6 5.5685 0.6055 0.0026 7 6 6.0995 1.8885 0.0026 8 7 7.4869 2.0719 0.0041 9 7 8.3403 0.9610 0.0050 10 6 9.6764 1.1376 0.0070 11 8 10.1400 2.2584 0.0075 12 6 10.5945 -0.0575 0.0085 13 6 12.0491 0.4169 0.0100 14 6 12.9672 -0.7782 0.0121 15 1 12.5545 -1.7762 0.0129 16 6 14.3341 -0.5974 0.0143 17 7 14.8367 0.6178 0.0139 18 14 15.4720 -2.0788 0.0162 19 1 15.7757 -2.4716 -1.3832 20 1 16.7341 -1.7326 0.7181 21 1 14.8111 -3.2099 0.7155 22 6 5.2532 2.9895 0.0016 23 6 3.8842 2.8075 0.0010 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7859 -0.5724 0.0110 30 1 6.2259 -0.2513 0.0037 31 1 7.8576 2.9683 0.0045 32 1 7.9696 0.0646 0.0042 33 1 10.4071 -0.6584 0.8984 34 1 10.4097 -0.6587 -0.8816 35 1 12.2363 1.0176 -0.8800 36 1 12.2342 1.0184 0.8999 37 1 15.7983 0.7450 0.0150 38 1 5.6655 3.9877 0.0020 39 1 3.2258 3.6637 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294356310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:06 Heat of formation + Delta-G solvation = -23.558419 kcal Electronic energy + Delta-G solvation = -20104.700796 eV Core-core repulsion = 16820.634974 eV Total energy + Delta-G solvation = -3284.065822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35730 -39.40578 -37.96816 -35.38131 -33.54421 -32.32826 -31.67799 -31.10881 -30.47214 -27.55907 -25.54960 -24.39815 -22.75085 -21.80804 -21.51173 -20.01356 -18.53628 -17.76636 -17.36911 -16.42223 -16.30904 -15.61506 -15.47361 -15.14728 -14.49262 -14.42750 -13.88181 -13.81360 -13.61510 -13.35935 -13.13016 -12.98989 -12.54903 -12.40173 -12.23664 -11.95716 -11.50480 -11.25545 -10.97350 -10.94096 -10.67983 -10.64887 -10.05201 -9.78358 -9.39970 -9.21820 -9.15150 -8.89598 -8.37251 -7.00270 -6.00979 -4.05956 1.15204 1.44852 2.15020 3.05751 3.05757 3.30712 3.37021 3.39346 3.67933 4.33477 4.44920 4.55445 4.59055 4.70726 4.75585 4.90294 5.05472 5.13845 5.27925 5.30221 5.34236 5.43423 5.55207 5.65393 5.78423 5.91773 6.08381 6.08518 6.15878 6.20878 6.45153 6.69535 6.99167 7.30615 7.52952 7.68943 7.77375 7.86120 8.00384 8.31720 8.68069 9.01966 9.57972 11.09895 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039828 B = 0.002452 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.857496 B =11415.029594 C =12086.835626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.321 6.321 4 C 0.064 3.936 5 C -0.151 4.151 6 C -0.166 4.166 7 C 0.194 3.806 8 N -0.546 5.546 9 N -0.538 5.538 10 C 0.509 3.491 11 O -0.534 6.534 12 C -0.119 4.119 13 C 0.038 3.962 14 C -0.529 4.529 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.155 4.155 23 C -0.094 4.094 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.432 0.568 32 H 0.417 0.583 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.132 0.868 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.270 -1.304 -0.025 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.236 6.236 4 C 0.018 3.982 5 C -0.170 4.170 6 C -0.190 4.190 7 C 0.090 3.910 8 N -0.272 5.272 9 N -0.287 5.287 10 C 0.297 3.703 11 O -0.408 6.408 12 C -0.160 4.160 13 C 0.000 4.000 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.527 5.527 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.179 4.179 23 C -0.114 4.114 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.275 0.725 32 H 0.258 0.742 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.149 0.851 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -26.752 -0.405 -0.019 26.755 hybrid contribution 0.738 -1.146 -0.008 1.363 sum -26.013 -1.551 -0.027 26.059 Atomic orbital electron populations 1.21767 0.93003 1.02706 1.03414 1.22700 0.95648 0.82459 1.01166 1.86043 1.19083 1.28640 1.89819 1.18698 0.82191 0.93942 1.03338 1.20941 0.93298 0.97989 1.04794 1.20241 0.94855 0.95108 1.08750 1.17721 0.81605 0.94298 0.97399 1.43412 0.98396 1.02171 1.83248 1.45417 1.02676 1.02091 1.78473 1.21979 0.79702 0.93429 0.75141 1.90690 1.75108 1.26026 1.48964 1.21879 0.97512 0.93601 1.03038 1.18927 0.85643 0.96572 0.98864 1.21184 0.91181 0.92627 1.51739 0.92466 1.25028 0.98380 0.95779 0.95207 1.69994 1.12341 1.20434 1.49936 0.86562 0.80307 0.82809 0.78090 1.20640 1.21202 1.19862 1.20270 0.91937 0.97522 1.08138 1.20100 0.93996 0.94866 1.02390 0.90540 0.91608 0.91602 0.92298 0.92302 0.85555 0.86152 0.72517 0.74231 0.89687 0.89693 0.95634 0.95629 0.92873 0.85051 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.06 0.39 5.46 37.16 0.20 0.60 16 3 O -0.32 -3.27 10.14 -19.72 -0.20 -3.47 16 4 C 0.06 0.69 6.69 -39.24 -0.26 0.43 16 5 C -0.15 -1.51 9.03 -39.45 -0.36 -1.87 16 6 C -0.17 -1.80 9.48 -39.40 -0.37 -2.17 16 7 C 0.19 2.30 6.72 -83.69 -0.56 1.74 16 8 N -0.55 -7.41 6.46 32.45 0.21 -7.20 16 9 N -0.54 -7.68 6.22 31.22 0.19 -7.48 16 10 C 0.51 9.47 7.95 -10.98 -0.09 9.38 16 11 O -0.53 -12.18 15.82 5.55 0.09 -12.10 16 12 C -0.12 -2.29 5.64 -27.88 -0.16 -2.44 16 13 C 0.04 0.98 4.26 -27.88 -0.12 0.87 16 14 C -0.53 -14.66 9.11 -34.44 -0.31 -14.97 16 15 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.15 -1.64 9.89 -39.40 -0.39 -2.03 16 23 C -0.09 -0.97 9.98 -39.46 -0.39 -1.36 16 24 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 28 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 29 H 0.13 0.99 6.29 -52.49 -0.33 0.66 16 30 H 0.12 1.12 6.20 -52.49 -0.33 0.79 16 31 H 0.43 6.03 8.02 -182.60 -1.46 4.57 16 32 H 0.42 4.67 6.61 -182.60 -1.21 3.46 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -33.95 334.23 -8.95 -42.90 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.46 Total: 2.97 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.53 Total: -10.69 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 1.14 Total: -40.99 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.11 Total: -15.57 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.95 -8.95 -42.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294356310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.342 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds