Wall clock time and date at job start Tue Mar 31 2020 00:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.38706 * 119.98444 * 359.72203 * 4 3 2 6 6 C 1.38113 * 120.02040 * 179.76665 * 5 4 3 7 7 C 1.38858 * 119.97934 * 0.51256 * 6 5 4 8 8 N 1.39940 * 120.01762 * 179.72275 * 7 6 5 9 9 N 1.40091 * 120.00139 * 0.02562 * 8 7 6 10 10 C 1.34773 * 120.00237 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00104 * 359.97438 * 10 9 8 12 12 C 1.50706 * 120.00224 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.46819 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46819 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99898 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99975 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00037 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99752 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47312 * 89.99755 * 18 16 14 20 20 H 1.48509 * 109.46969 * 209.99450 * 18 16 14 21 21 H 1.48493 * 109.47393 * 329.99214 * 18 16 14 22 22 C 1.38868 * 119.96232 * 359.73953 * 7 6 5 23 23 C 1.38104 * 119.97993 * 0.02562 * 22 7 6 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07993 * 119.98782 * 0.02562 * 5 4 3 30 30 H 1.07998 * 120.00767 * 180.23176 * 6 5 4 31 31 H 0.97004 * 119.99782 * 180.02562 * 8 7 6 32 32 H 0.97004 * 120.00085 * 0.02562 * 9 8 7 33 33 H 1.08999 * 109.46576 * 299.99678 * 12 10 9 34 34 H 1.08997 * 109.46958 * 60.00071 * 12 10 9 35 35 H 1.08991 * 109.47608 * 299.99635 * 13 12 10 36 36 H 1.08997 * 109.47123 * 60.00386 * 13 12 10 37 37 H 0.97001 * 119.99997 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.00669 * 179.97438 * 22 7 6 39 39 H 1.08002 * 119.98723 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1991 0.4254 0.0069 6 6 5.5685 0.6055 0.0026 7 6 6.0995 1.8885 0.0026 8 7 7.4869 2.0719 0.0041 9 7 8.3403 0.9610 0.0050 10 6 9.6764 1.1376 0.0070 11 8 10.1400 2.2584 0.0075 12 6 10.5945 -0.0575 0.0085 13 6 12.0491 0.4169 0.0100 14 6 12.9672 -0.7782 0.0121 15 1 12.5545 -1.7762 0.0129 16 6 14.3341 -0.5974 0.0143 17 7 14.8367 0.6178 0.0139 18 14 15.4720 -2.0788 0.0162 19 1 15.7757 -2.4716 -1.3832 20 1 16.7341 -1.7326 0.7181 21 1 14.8111 -3.2099 0.7155 22 6 5.2532 2.9895 0.0016 23 6 3.8842 2.8075 0.0010 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7859 -0.5724 0.0110 30 1 6.2259 -0.2513 0.0037 31 1 7.8576 2.9683 0.0045 32 1 7.9696 0.0646 0.0042 33 1 10.4071 -0.6584 0.8984 34 1 10.4097 -0.6587 -0.8816 35 1 12.2363 1.0176 -0.8800 36 1 12.2342 1.0184 0.8999 37 1 15.7983 0.7450 0.0150 38 1 5.6655 3.9877 0.0020 39 1 3.2258 3.6637 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294356310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:06 Heat of formation + Delta-G solvation = -46.158687 kcal Electronic energy + Delta-G solvation = -20105.680817 eV Core-core repulsion = 16820.634974 eV Total energy + Delta-G solvation = -3285.045843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26580 -40.64995 -38.89940 -36.51440 -35.56222 -33.47159 -32.75762 -32.22764 -31.53326 -28.68154 -27.30661 -25.08394 -24.08464 -22.85363 -22.60148 -21.38671 -19.41301 -18.97146 -18.67767 -18.07854 -16.92449 -16.85019 -16.63778 -16.47087 -16.37054 -15.42357 -14.98210 -14.80312 -14.48954 -14.35656 -14.24626 -14.20402 -13.61437 -13.60519 -13.25783 -13.12728 -12.82038 -12.55588 -12.47955 -12.33286 -11.93123 -11.66482 -11.65072 -11.48705 -11.31349 -10.98354 -10.56033 -10.03603 -9.89157 -8.17558 -7.98581 -6.31274 0.35593 0.58819 1.00613 1.43982 1.46106 1.57010 1.61090 2.40555 2.43329 2.85190 3.16062 3.23139 3.81427 3.88663 4.01188 4.12508 4.19515 4.29964 4.44064 4.44441 4.46650 4.53690 4.66644 4.83334 4.99787 5.00937 5.02396 5.11896 5.25602 5.31787 5.42632 5.50916 5.59770 5.62641 5.85397 5.87996 6.16510 6.35591 6.57600 6.74884 6.87702 7.37259 7.39289 8.95033 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039828 B = 0.002452 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.857496 B =11415.029594 C =12086.835626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.335 6.335 4 C 0.060 3.940 5 C -0.154 4.154 6 C -0.169 4.169 7 C 0.172 3.828 8 N -0.555 5.555 9 N -0.513 5.513 10 C 0.510 3.490 11 O -0.587 6.587 12 C -0.107 4.107 13 C 0.041 3.959 14 C -0.541 4.541 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.974 3.026 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.254 1.254 22 C -0.154 4.154 23 C -0.104 4.104 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.149 0.851 30 H 0.136 0.864 31 H 0.428 0.572 32 H 0.434 0.566 33 H 0.113 0.887 34 H 0.113 0.887 35 H -0.016 1.016 36 H -0.016 1.016 37 H 0.262 0.738 38 H 0.144 0.856 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.176 -3.967 -0.019 29.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.251 6.251 4 C 0.014 3.986 5 C -0.173 4.173 6 C -0.192 4.192 7 C 0.070 3.930 8 N -0.283 5.283 9 N -0.261 5.261 10 C 0.299 3.701 11 O -0.466 6.466 12 C -0.148 4.148 13 C 0.004 3.996 14 C -0.579 4.579 15 H 0.097 0.903 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.798 3.202 19 H -0.198 1.198 20 H -0.214 1.214 21 H -0.178 1.178 22 C -0.177 4.177 23 C -0.123 4.123 24 H 0.115 0.885 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.270 0.730 32 H 0.278 0.722 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.071 0.929 38 H 0.161 0.839 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -28.764 -3.131 -0.014 28.934 hybrid contribution 1.117 -0.293 -0.011 1.155 sum -27.646 -3.425 -0.025 27.858 Atomic orbital electron populations 1.21796 0.91807 1.03982 1.03072 1.22985 0.96681 0.81221 1.01999 1.86042 1.18701 1.30674 1.89641 1.18944 0.82751 0.94336 1.02557 1.21180 0.92890 0.98975 1.04217 1.20496 0.95552 0.95143 1.07998 1.17931 0.80705 0.95323 0.98998 1.43477 0.98784 1.01467 1.84544 1.44922 1.01727 1.03375 1.76108 1.21675 0.81012 0.92293 0.75149 1.90675 1.76322 1.27699 1.51861 1.21609 0.93343 0.94136 1.05726 1.18709 0.90507 0.95432 0.94994 1.21711 0.91734 0.93820 1.50671 0.90250 1.26137 1.00671 0.99025 0.94736 1.70175 1.12722 1.23362 1.51501 0.85317 0.77529 0.78914 0.78456 1.19796 1.21419 1.17790 1.20471 0.92035 0.97981 1.07223 1.20329 0.94056 0.95572 1.02379 0.88456 0.91953 0.91947 0.91414 0.91411 0.83317 0.84663 0.73041 0.72165 0.86890 0.86882 0.99717 0.99712 0.92909 0.83863 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 71.98 0.74 -0.53 16 2 C 0.05 0.54 5.46 71.98 0.39 0.93 16 3 O -0.34 -6.25 10.14 -93.49 -0.95 -7.19 16 4 C 0.06 1.18 6.69 22.49 0.15 1.33 16 5 C -0.15 -2.71 9.03 22.35 0.20 -2.50 16 6 C -0.17 -3.28 9.48 22.39 0.21 -3.07 16 7 C 0.17 3.86 6.72 38.15 0.26 4.12 16 8 N -0.55 -14.69 6.46 -51.26 -0.33 -15.02 16 9 N -0.51 -14.00 6.22 -173.53 -1.08 -15.08 16 10 C 0.51 18.97 7.95 87.66 0.70 19.67 16 11 O -0.59 -27.88 15.82 -3.04 -0.05 -27.92 16 12 C -0.11 -4.02 5.64 29.85 0.17 -3.86 16 13 C 0.04 2.23 4.26 29.85 0.13 2.36 16 14 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 15 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 16 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 17 N -0.94 -58.85 13.29 21.45 0.28 -58.57 16 18 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 22 C -0.15 -3.09 9.89 22.39 0.22 -2.87 16 23 C -0.10 -2.00 9.98 22.35 0.22 -1.78 16 24 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.68 7.67 -2.39 -0.02 0.66 16 28 H 0.07 0.68 7.65 -2.39 -0.02 0.66 16 29 H 0.15 1.86 6.29 -2.91 -0.02 1.85 16 30 H 0.14 2.11 6.20 -2.91 -0.02 2.09 16 31 H 0.43 12.10 8.02 -213.32 -1.71 10.39 16 32 H 0.43 8.60 6.61 -213.32 -1.41 7.19 16 33 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 34 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 35 H -0.02 -0.96 8.10 -2.39 -0.02 -0.98 16 36 H -0.02 -0.95 8.10 -2.39 -0.02 -0.97 16 37 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -76.20 334.23 1.94 -74.26 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -2.05 Total: 19.83 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 4.09 Total: -15.92 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -1.13 Total: -88.67 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -1.00 Total: -35.12 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -76.20 1.94 -74.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294356310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.099 kcal (2) G-P(sol) polarization free energy of solvation -76.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds