Wall clock time and date at job start Tue Mar 31 2020 00:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47149 * 2 1 4 4 C 1.36938 * 120.00143 * 268.94318 * 3 2 1 5 5 H 1.07999 * 120.00076 * 139.89348 * 4 3 2 6 6 C 1.38810 * 119.99797 * 319.88797 * 4 3 2 7 7 N 1.31623 * 120.00165 * 165.51073 * 6 4 3 8 8 Si 1.86800 * 120.00195 * 345.51082 * 6 4 3 9 9 H 1.48510 * 109.47189 * 95.40977 * 8 6 4 10 10 H 1.48495 * 109.47475 * 215.41049 * 8 6 4 11 11 H 1.48504 * 109.47149 * 335.41458 * 8 6 4 12 12 C 1.46503 * 119.99958 * 88.93907 * 3 2 1 13 13 H 1.09002 * 109.46958 * 353.59342 * 12 3 2 14 14 C 1.53003 * 109.47090 * 233.59375 * 12 3 2 15 15 C 1.50700 * 109.47181 * 113.59075 * 12 3 2 16 16 C 1.38260 * 119.99663 * 18.42629 * 15 12 3 17 17 C 1.38216 * 119.99725 * 179.97438 * 16 15 12 18 18 N 1.48017 * 119.99918 * 180.02562 * 17 16 15 19 19 O 1.21795 * 120.00137 * 359.97438 * 18 17 16 20 20 O 1.21796 * 119.99851 * 179.97438 * 18 17 16 21 21 C 1.38260 * 119.99875 * 359.97438 * 17 16 15 22 22 C 1.38218 * 119.99874 * 359.82178 * 21 17 16 23 23 C 1.38206 * 120.00078 * 198.44519 * 15 12 3 24 24 C 1.50709 * 120.00034 * 359.97438 * 23 15 12 25 25 H 1.09006 * 109.47008 * 304.92309 * 1 2 3 26 26 H 1.08993 * 109.47800 * 64.91984 * 1 2 3 27 27 H 1.09006 * 109.47055 * 184.93214 * 1 2 3 28 28 H 1.09004 * 109.46909 * 240.00746 * 2 1 3 29 29 H 1.08996 * 109.47728 * 120.00094 * 2 1 3 30 30 H 0.97002 * 120.00014 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.46879 * 59.99871 * 14 12 3 32 32 H 1.08992 * 109.46948 * 180.02562 * 14 12 3 33 33 H 1.09002 * 109.47193 * 299.99823 * 14 12 3 34 34 H 1.08000 * 120.00239 * 0.02562 * 16 15 12 35 35 H 1.07997 * 119.99775 * 180.02562 * 21 17 16 36 36 H 1.08002 * 119.99605 * 180.22707 * 22 21 17 37 37 H 1.08996 * 109.46400 * 90.00046 * 24 23 15 38 38 H 1.08997 * 109.47095 * 330.00427 * 24 23 15 39 39 H 1.08997 * 109.46705 * 210.00037 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2672 2.0195 -1.1857 5 1 1.9976 3.0583 -1.3068 6 6 2.8660 1.3314 -2.2320 7 7 2.8496 1.8370 -3.4471 8 14 3.6952 -0.3124 -1.9155 9 1 2.7441 -1.4126 -2.2163 10 1 4.8908 -0.4396 -2.7869 11 1 4.1096 -0.3918 -0.4917 12 6 2.2403 2.0797 1.2685 13 1 1.8836 1.4604 2.0915 14 6 1.4779 3.4062 1.2607 15 6 3.7130 2.3477 1.4434 16 6 4.5587 2.3003 0.3506 17 6 5.9093 2.5467 0.5109 18 7 6.8146 2.4964 -0.6590 19 8 6.3696 2.2376 -1.7628 20 8 8.0046 2.7140 -0.5179 21 6 6.4144 2.8410 1.7638 22 6 5.5681 2.8926 2.8554 23 6 4.2181 2.6406 2.6960 24 6 3.2962 2.6924 3.8871 25 1 -0.3633 0.5883 0.8427 26 1 -0.3634 0.4356 -0.9307 27 1 -0.3633 -1.0239 0.0884 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.2678 1.3559 -4.1783 31 1 0.4127 3.2122 1.1342 32 1 1.6434 3.9260 2.2042 33 1 1.8346 4.0255 0.4376 34 1 4.1639 2.0716 -0.6283 35 1 7.4696 3.0339 1.8889 36 1 5.9621 3.1262 3.8335 37 1 3.2357 1.7042 4.3429 38 1 2.3031 3.0051 3.5645 39 1 3.6831 3.4054 4.6152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298022183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:20 Heat of formation + Delta-G solvation = 49.415542 kcal Electronic energy + Delta-G solvation = -23046.662170 eV Core-core repulsion = 19765.760736 eV Total energy + Delta-G solvation = -3280.901434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.56051 -39.64778 -36.74710 -35.90789 -33.67073 -32.09838 -31.89493 -29.53355 -28.50614 -28.07407 -24.94707 -24.44459 -22.89984 -22.15446 -21.11760 -20.08498 -18.23083 -18.02378 -16.90656 -16.48837 -15.69241 -15.54541 -15.29555 -14.44136 -13.96473 -13.80560 -13.70961 -13.29354 -12.87124 -12.65885 -12.44632 -12.10641 -12.06148 -11.78199 -11.59163 -11.47318 -11.21067 -10.95263 -10.92786 -10.70996 -10.58236 -10.50945 -10.47514 -10.26661 -9.74539 -9.53836 -8.88316 -8.67003 -8.49938 -7.02492 -6.12595 -3.62580 0.40461 1.47632 1.88608 2.06170 3.23178 3.37901 3.49740 3.73827 4.36667 4.63879 4.78864 4.85685 5.01485 5.14012 5.18648 5.38124 5.54070 5.55638 5.67482 5.77496 5.83354 5.89363 5.91523 6.02485 6.11708 6.18919 6.26083 6.28329 6.37946 6.45215 6.61620 6.66591 6.66908 6.84845 6.93853 6.97666 7.20578 7.91837 8.25340 8.28066 8.80018 9.49646 9.91452 11.00346 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.010804 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.895595 B = 2590.928506 C = 4037.079451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 N -0.604 5.604 4 C -0.283 4.283 5 H 0.086 0.914 6 C 0.048 3.952 7 N -0.880 5.880 8 Si 0.873 3.127 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.271 1.271 12 C 0.211 3.789 13 H 0.071 0.929 14 C -0.152 4.152 15 C -0.085 4.085 16 C -0.037 4.037 17 C -0.066 4.066 18 N 0.031 4.969 19 O -0.143 6.143 20 O -0.194 6.194 21 C -0.071 4.071 22 C -0.136 4.136 23 C -0.049 4.049 24 C -0.125 4.125 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.271 0.729 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.208 0.792 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.066 0.392 14.351 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.006 3.994 3 N -0.326 5.326 4 C -0.411 4.411 5 H 0.104 0.896 6 C -0.156 4.156 7 N -0.518 5.518 8 Si 0.703 3.297 9 H -0.213 1.213 10 H -0.216 1.216 11 H -0.196 1.196 12 C 0.103 3.897 13 H 0.089 0.911 14 C -0.211 4.211 15 C -0.088 4.088 16 C -0.055 4.055 17 C -0.150 4.150 18 N 0.547 4.453 19 O -0.363 6.363 20 O -0.402 6.402 21 C -0.090 4.090 22 C -0.154 4.154 23 C -0.050 4.050 24 C -0.181 4.181 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.224 0.776 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.402 0.420 14.712 14.723 hybrid contribution 0.951 -0.940 -0.314 1.373 sum 0.549 -0.520 14.398 14.418 Atomic orbital electron populations 1.22243 0.98560 0.99345 1.02022 1.21190 0.92876 0.86402 0.98931 1.44238 1.75540 1.11231 1.01625 1.18706 1.35683 0.98251 0.88476 0.89621 1.25508 0.96815 0.97618 0.95618 1.69710 1.43474 1.39158 0.99419 0.87032 0.79500 0.84713 0.78469 1.21318 1.21644 1.19578 1.19352 0.87055 0.93854 0.89399 0.91095 1.22157 1.00378 0.97648 1.00906 1.20874 0.98920 0.98359 0.90681 1.22820 0.88591 0.88082 1.05964 1.21306 0.91611 1.16219 0.85821 1.43727 1.01255 0.97437 1.02850 1.94648 1.80242 1.50062 1.11369 1.94421 0.99655 1.54056 1.92084 1.20855 1.01232 0.96838 0.90114 1.20826 0.92692 1.03835 0.98073 1.20238 0.94287 0.95017 0.95433 1.21013 0.99446 1.02584 0.95034 0.93538 0.92162 0.94278 0.93141 0.94370 0.91873 0.92250 0.93479 0.91620 0.77591 0.84159 0.84699 0.90634 0.90020 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 10.24 37.16 0.38 -2.43 16 2 C 0.13 2.63 4.97 -4.04 -0.02 2.61 16 3 N -0.60 -12.90 1.76 -166.97 -0.29 -13.20 16 4 C -0.28 -7.17 6.97 -15.06 -0.10 -7.28 16 5 H 0.09 2.36 6.84 -52.49 -0.36 2.00 16 6 C 0.05 1.32 4.65 -17.43 -0.08 1.24 16 7 N -0.88 -25.69 13.97 55.49 0.78 -24.91 16 8 Si 0.87 22.11 23.10 -169.99 -3.93 18.18 16 9 H -0.29 -6.98 6.80 56.52 0.38 -6.60 16 10 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 11 H -0.27 -6.69 6.84 56.52 0.39 -6.30 16 12 C 0.21 3.71 2.32 -69.08 -0.16 3.55 16 13 H 0.07 1.09 7.10 -51.93 -0.37 0.72 16 14 C -0.15 -2.44 8.75 37.16 0.33 -2.11 16 15 C -0.09 -1.54 5.10 -104.63 -0.53 -2.08 16 16 C -0.04 -0.80 7.99 -39.58 -0.32 -1.12 16 17 C -0.07 -1.36 6.85 -79.95 -0.55 -1.90 16 18 N 0.03 0.69 4.45 33.96 0.15 0.84 16 19 O -0.14 -3.59 18.45 -29.46 -0.54 -4.13 16 20 O -0.19 -4.10 18.45 -29.46 -0.54 -4.65 16 21 C -0.07 -1.15 9.56 -39.58 -0.38 -1.53 16 22 C -0.14 -1.83 9.70 -39.58 -0.38 -2.21 16 23 C -0.05 -0.70 5.87 -104.62 -0.61 -1.31 16 24 C -0.12 -1.27 9.24 36.01 0.33 -0.94 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 1.14 3.06 -51.93 -0.16 0.98 16 29 H 0.04 0.69 8.00 -51.93 -0.42 0.28 16 30 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.61 6.21 -51.93 -0.32 0.28 16 33 H 0.06 1.21 6.85 -51.93 -0.36 0.86 16 34 H 0.21 5.14 2.02 -52.49 -0.11 5.03 16 35 H 0.14 1.97 7.61 -52.49 -0.40 1.57 16 36 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.82 4.88 -51.93 -0.25 0.56 16 39 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 LS Contribution 310.88 15.07 4.68 4.68 Total: -1.00 -29.63 310.88 -6.66 -36.29 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.86 Total: 2.40 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -2.10 Total: -15.50 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.63 Total: -37.27 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -1.09 Total: -8.78 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -3.93 Total: 18.18 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.63 -6.66 -36.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298022183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.703 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds