Wall clock time and date at job start Tue Mar 31 2020 00:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47149 * 2 1 4 4 C 1.36938 * 120.00143 * 268.94318 * 3 2 1 5 5 H 1.07999 * 120.00076 * 139.89348 * 4 3 2 6 6 C 1.38810 * 119.99797 * 319.88797 * 4 3 2 7 7 N 1.31623 * 120.00165 * 165.51073 * 6 4 3 8 8 Si 1.86800 * 120.00195 * 345.51082 * 6 4 3 9 9 H 1.48510 * 109.47189 * 95.40977 * 8 6 4 10 10 H 1.48495 * 109.47475 * 215.41049 * 8 6 4 11 11 H 1.48504 * 109.47149 * 335.41458 * 8 6 4 12 12 C 1.46503 * 119.99958 * 88.93907 * 3 2 1 13 13 H 1.09002 * 109.46958 * 353.59342 * 12 3 2 14 14 C 1.53003 * 109.47090 * 233.59375 * 12 3 2 15 15 C 1.50700 * 109.47181 * 113.59075 * 12 3 2 16 16 C 1.38260 * 119.99663 * 18.42629 * 15 12 3 17 17 C 1.38216 * 119.99725 * 179.97438 * 16 15 12 18 18 N 1.48017 * 119.99918 * 180.02562 * 17 16 15 19 19 O 1.21795 * 120.00137 * 359.97438 * 18 17 16 20 20 O 1.21796 * 119.99851 * 179.97438 * 18 17 16 21 21 C 1.38260 * 119.99875 * 359.97438 * 17 16 15 22 22 C 1.38218 * 119.99874 * 359.82178 * 21 17 16 23 23 C 1.38206 * 120.00078 * 198.44519 * 15 12 3 24 24 C 1.50709 * 120.00034 * 359.97438 * 23 15 12 25 25 H 1.09006 * 109.47008 * 304.92309 * 1 2 3 26 26 H 1.08993 * 109.47800 * 64.91984 * 1 2 3 27 27 H 1.09006 * 109.47055 * 184.93214 * 1 2 3 28 28 H 1.09004 * 109.46909 * 240.00746 * 2 1 3 29 29 H 1.08996 * 109.47728 * 120.00094 * 2 1 3 30 30 H 0.97002 * 120.00014 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.46879 * 59.99871 * 14 12 3 32 32 H 1.08992 * 109.46948 * 180.02562 * 14 12 3 33 33 H 1.09002 * 109.47193 * 299.99823 * 14 12 3 34 34 H 1.08000 * 120.00239 * 0.02562 * 16 15 12 35 35 H 1.07997 * 119.99775 * 180.02562 * 21 17 16 36 36 H 1.08002 * 119.99605 * 180.22707 * 22 21 17 37 37 H 1.08996 * 109.46400 * 90.00046 * 24 23 15 38 38 H 1.08997 * 109.47095 * 330.00427 * 24 23 15 39 39 H 1.08997 * 109.46705 * 210.00037 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2672 2.0195 -1.1857 5 1 1.9976 3.0583 -1.3068 6 6 2.8660 1.3314 -2.2320 7 7 2.8496 1.8370 -3.4471 8 14 3.6952 -0.3124 -1.9155 9 1 2.7441 -1.4126 -2.2163 10 1 4.8908 -0.4396 -2.7869 11 1 4.1096 -0.3918 -0.4917 12 6 2.2403 2.0797 1.2685 13 1 1.8836 1.4604 2.0915 14 6 1.4779 3.4062 1.2607 15 6 3.7130 2.3477 1.4434 16 6 4.5587 2.3003 0.3506 17 6 5.9093 2.5467 0.5109 18 7 6.8146 2.4964 -0.6590 19 8 6.3696 2.2376 -1.7628 20 8 8.0046 2.7140 -0.5179 21 6 6.4144 2.8410 1.7638 22 6 5.5681 2.8926 2.8554 23 6 4.2181 2.6406 2.6960 24 6 3.2962 2.6924 3.8871 25 1 -0.3633 0.5883 0.8427 26 1 -0.3634 0.4356 -0.9307 27 1 -0.3633 -1.0239 0.0884 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.2678 1.3559 -4.1783 31 1 0.4127 3.2122 1.1342 32 1 1.6434 3.9260 2.2042 33 1 1.8346 4.0255 0.4376 34 1 4.1639 2.0716 -0.6283 35 1 7.4696 3.0339 1.8889 36 1 5.9621 3.1262 3.8335 37 1 3.2357 1.7042 4.3429 38 1 2.3031 3.0051 3.5645 39 1 3.6831 3.4054 4.6152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298022183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:19 Heat of formation + Delta-G solvation = 31.458987 kcal Electronic energy + Delta-G solvation = -23047.440824 eV Core-core repulsion = 19765.760736 eV Total energy + Delta-G solvation = -3281.680089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.22708 -41.01251 -38.31038 -37.62969 -35.07175 -33.83466 -33.38628 -30.89408 -30.06172 -29.39442 -26.58728 -25.89088 -24.34319 -23.64381 -22.53972 -21.68161 -19.79130 -19.69950 -18.60987 -18.33699 -17.38981 -17.07280 -16.54564 -15.88338 -15.41205 -15.19117 -14.94459 -14.83610 -14.44748 -14.24324 -13.79460 -13.42779 -13.20134 -13.09866 -13.05260 -12.86518 -12.79836 -12.66092 -12.45012 -12.32817 -12.30582 -12.20582 -11.99839 -11.91017 -11.47572 -11.35903 -10.64073 -10.12297 -9.86501 -8.81735 -8.24384 -5.65675 -1.14689 0.18257 0.40062 0.52094 1.15287 1.27911 1.40246 2.30221 2.42749 3.04428 3.19435 3.55708 3.70072 3.86347 4.03137 4.09887 4.24043 4.41976 4.42486 4.50545 4.66985 4.70052 4.73121 4.80933 4.88597 4.92702 4.98436 5.04369 5.13627 5.15368 5.18620 5.30569 5.35191 5.46949 5.50528 5.58552 5.78317 5.93073 6.19518 6.53968 6.94762 7.57092 7.98073 8.93789 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.010804 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.895595 B = 2590.928506 C = 4037.079451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.121 3.879 3 N -0.616 5.616 4 C -0.238 4.238 5 H 0.053 0.947 6 C 0.001 3.999 7 N -0.936 5.936 8 Si 0.923 3.077 9 H -0.276 1.276 10 H -0.325 1.325 11 H -0.261 1.261 12 C 0.206 3.794 13 H 0.109 0.891 14 C -0.144 4.144 15 C -0.104 4.104 16 C -0.081 4.081 17 C -0.095 4.095 18 N 0.032 4.968 19 O -0.248 6.248 20 O -0.141 6.141 21 C -0.063 4.063 22 C -0.116 4.116 23 C -0.023 4.023 24 C -0.126 4.126 25 H 0.068 0.932 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.020 0.980 29 H 0.067 0.933 30 H 0.262 0.738 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.026 0.974 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.192 0.808 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.244 0.455 20.938 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.003 4.003 3 N -0.339 5.339 4 C -0.368 4.368 5 H 0.070 0.930 6 C -0.197 4.197 7 N -0.580 5.580 8 Si 0.755 3.245 9 H -0.203 1.203 10 H -0.255 1.255 11 H -0.186 1.186 12 C 0.100 3.900 13 H 0.127 0.873 14 C -0.203 4.203 15 C -0.107 4.107 16 C -0.099 4.099 17 C -0.178 4.178 18 N 0.543 4.457 19 O -0.443 6.443 20 O -0.368 6.368 21 C -0.082 4.082 22 C -0.134 4.134 23 C -0.024 4.024 24 C -0.182 4.182 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.045 0.955 34 H 0.185 0.815 35 H 0.183 0.817 36 H 0.209 0.791 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.761 0.414 21.209 21.227 hybrid contribution 1.136 -0.802 -1.947 2.393 sum 0.375 -0.388 19.262 19.270 Atomic orbital electron populations 1.22114 0.96227 1.01287 1.01455 1.21319 0.94803 0.85428 0.98784 1.44380 1.75962 1.11772 1.01751 1.18409 1.32170 0.96592 0.89630 0.92968 1.25899 0.98320 0.99837 0.95669 1.69820 1.46887 1.40878 1.00366 0.86231 0.77545 0.82949 0.77821 1.20309 1.25507 1.18568 1.19676 0.87407 0.94648 0.88283 0.87301 1.22080 1.00085 0.96599 1.01495 1.20950 0.98472 0.99779 0.91475 1.22545 0.90172 0.91441 1.05735 1.21579 0.91115 1.19101 0.86041 1.44185 1.01569 0.96577 1.03372 1.94689 1.80693 1.55736 1.13199 1.94323 1.00148 1.50427 1.91921 1.21339 1.03068 0.95154 0.88666 1.21493 0.91811 1.00830 0.99253 1.20776 0.95566 0.91045 0.95007 1.21206 0.98520 1.04917 0.93511 0.91277 0.95021 0.91563 0.96207 0.91455 0.92899 0.91909 0.89447 0.95488 0.81537 0.81676 0.79081 0.88300 0.89636 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 10.24 71.98 0.74 -4.18 16 2 C 0.12 4.68 4.97 86.38 0.43 5.11 16 3 N -0.62 -26.10 1.76 -682.19 -1.20 -27.30 16 4 C -0.24 -12.74 6.97 84.03 0.59 -12.15 16 5 H 0.05 3.12 6.84 -2.91 -0.02 3.10 16 6 C 0.00 0.05 4.65 84.86 0.39 0.44 16 7 N -0.94 -59.96 13.97 21.65 0.30 -59.66 16 8 Si 0.92 49.31 23.10 68.60 1.58 50.89 16 9 H -0.28 -13.86 6.80 99.48 0.68 -13.18 16 10 H -0.32 -18.93 7.11 99.48 0.71 -18.22 16 11 H -0.26 -13.18 6.84 99.48 0.68 -12.50 16 12 C 0.21 6.65 2.32 44.25 0.10 6.76 16 13 H 0.11 2.71 7.10 -2.39 -0.02 2.70 16 14 C -0.14 -4.27 8.75 71.98 0.63 -3.64 16 15 C -0.10 -3.48 5.10 -19.87 -0.10 -3.58 16 16 C -0.08 -3.52 7.99 22.27 0.18 -3.35 16 17 C -0.09 -3.85 6.85 36.38 0.25 -3.60 16 18 N 0.03 1.51 4.45 -46.46 -0.21 1.30 16 19 O -0.25 -13.72 18.45 18.89 0.35 -13.37 16 20 O -0.14 -5.93 18.45 18.89 0.35 -5.58 16 21 C -0.06 -1.78 9.56 22.27 0.21 -1.57 16 22 C -0.12 -2.35 9.70 22.27 0.22 -2.13 16 23 C -0.02 -0.52 5.87 -19.87 -0.12 -0.63 16 24 C -0.13 -1.54 9.24 71.24 0.66 -0.88 16 25 H 0.07 1.91 8.14 -2.38 -0.02 1.90 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.02 0.90 3.06 -2.38 -0.01 0.90 16 29 H 0.07 2.21 8.00 -2.39 -0.02 2.19 16 30 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 1.84 6.21 -2.39 -0.01 1.83 16 33 H 0.03 0.99 6.85 -2.39 -0.02 0.97 16 34 H 0.17 8.82 2.02 -2.91 -0.01 8.81 16 35 H 0.17 3.81 7.61 -2.91 -0.02 3.79 16 36 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.05 4.88 -2.39 -0.01 1.04 16 39 H 0.10 0.70 8.08 -2.39 -0.02 0.68 16 Total: -1.00 -76.42 310.88 6.37 -70.04 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.02 Total: 7.08 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 4.18 Total: -23.40 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -1.11 Total: -85.66 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.70 Total: -18.95 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 1.58 Total: 50.89 kcal Total: -76.42 6.37 -70.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298022183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.503 kcal (2) G-P(sol) polarization free energy of solvation -76.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds