Wall clock time and date at job start Tue Mar 31 2020 01:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46505 * 119.99868 * 2 1 4 4 C 1.50702 * 109.47005 * 89.99858 * 3 2 1 5 5 C 1.34516 * 125.78422 * 89.99687 * 4 3 2 6 6 C 1.41380 * 106.83863 * 179.97438 * 5 4 3 7 7 C 1.34516 * 106.84069 * 0.02562 * 6 5 4 8 8 O 1.34293 * 125.79348 * 269.69690 * 4 3 2 9 9 C 1.34769 * 120.00045 * 179.72480 * 2 1 3 10 10 O 1.21590 * 120.00197 * 184.97036 * 9 2 1 11 11 N 1.34784 * 120.00073 * 4.97744 * 9 2 1 12 12 C 1.46495 * 119.99627 * 184.99874 * 11 9 2 13 13 C 1.53006 * 109.46693 * 174.81104 * 12 11 9 14 14 C 1.50705 * 115.54929 * 304.25069 * 13 12 11 15 15 H 1.07998 * 120.00029 * 116.44703 * 14 13 12 16 16 C 1.37877 * 119.99677 * 296.45191 * 14 13 12 17 17 N 1.31523 * 119.99385 * 190.68167 * 16 14 13 18 18 Si 1.86801 * 120.00493 * 10.67568 * 16 14 13 19 19 H 1.48494 * 109.46863 * 95.55473 * 18 16 14 20 20 H 1.48499 * 109.47040 * 215.55487 * 18 16 14 21 21 H 1.48503 * 109.46921 * 335.55262 * 18 16 14 22 22 C 1.52997 * 117.49885 * 158.58603 * 13 12 11 23 23 C 1.52995 * 117.50057 * 89.92318 * 13 12 11 24 24 H 1.09000 * 109.47346 * 86.39171 * 1 2 3 25 25 H 1.08997 * 109.46707 * 206.39395 * 1 2 3 26 26 H 1.09004 * 109.46965 * 326.39027 * 1 2 3 27 27 H 1.08995 * 109.47248 * 210.00169 * 3 2 1 28 28 H 1.08996 * 109.47197 * 330.00389 * 3 2 1 29 29 H 1.07993 * 126.58358 * 359.97297 * 5 4 3 30 30 H 1.07997 * 126.58277 * 179.97438 * 6 5 4 31 31 H 1.08005 * 125.79198 * 179.97438 * 7 6 5 32 32 H 0.96994 * 119.99661 * 5.00077 * 11 9 2 33 33 H 1.09001 * 109.47387 * 294.80723 * 12 11 9 34 34 H 1.09003 * 109.47411 * 54.80960 * 12 11 9 35 35 H 0.96997 * 119.99523 * 179.97438 * 17 16 14 36 36 H 1.08999 * 117.49780 * 359.97438 * 22 13 12 37 37 H 1.09004 * 117.50301 * 145.01895 * 22 13 12 38 38 H 1.09000 * 117.49464 * 214.97888 * 23 13 12 39 39 H 1.09004 * 117.50076 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 6 3.5247 1.3852 2.1625 6 6 3.3503 2.0013 3.4230 7 6 2.1778 2.6590 3.3764 8 8 1.6389 2.4799 2.1594 9 6 2.1389 -1.1671 0.0056 10 8 3.3513 -1.1687 0.0968 11 7 1.4688 -2.3327 -0.0901 12 6 2.1889 -3.6031 0.0260 13 6 1.1876 -4.7599 0.0119 14 6 0.1053 -4.6956 1.0587 15 1 -0.9287 -4.6020 0.7613 16 6 0.4354 -4.7560 2.3960 17 7 -0.5076 -4.9116 3.2996 18 14 2.2216 -4.6170 2.9246 19 1 2.5215 -3.2094 3.2903 20 1 2.4603 -5.4951 4.0981 21 1 3.1030 -5.0362 1.8053 22 6 1.7119 -6.1434 -0.3779 23 6 0.8215 -5.3610 -1.3466 24 1 -0.3634 0.0647 -1.0256 25 1 -0.3632 -0.9205 0.4568 26 1 -0.3633 0.8559 0.5689 27 1 3.1499 1.1385 -0.5138 28 1 1.6084 2.0284 -0.5138 29 1 4.3613 0.7759 1.8542 30 1 4.0279 1.9525 4.2625 31 1 1.7453 3.2367 4.1800 32 1 0.5099 -2.3302 -0.2358 33 1 2.8775 -3.7084 -0.8124 34 1 2.7494 -3.6191 0.9607 35 1 -0.2754 -4.9545 4.2404 36 1 2.7701 -6.2294 -0.6248 37 1 1.2738 -7.0071 0.1224 38 1 -0.2020 -5.7102 -1.4831 39 1 1.2937 -4.9320 -2.2305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331519021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:08 Heat of formation + Delta-G solvation = 28.838861 kcal Electronic energy + Delta-G solvation = -22123.130877 eV Core-core repulsion = 18841.337172 eV Total energy + Delta-G solvation = -3281.793706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.41806 -39.72041 -37.19244 -35.33891 -33.57921 -32.80623 -32.20267 -30.62190 -27.10190 -26.92439 -25.58189 -24.36714 -21.60713 -21.57019 -20.60776 -19.55869 -19.20960 -17.80597 -17.26279 -16.58680 -16.15923 -15.61183 -15.40741 -15.02803 -14.28103 -14.03027 -13.86162 -13.33646 -13.17551 -12.88892 -12.72643 -12.63246 -12.53987 -12.36077 -12.15017 -12.07438 -11.55148 -11.07248 -10.67702 -10.46921 -10.16397 -9.84335 -9.74191 -9.58139 -9.15544 -8.75779 -8.66659 -8.57071 -8.38588 -8.05259 -6.20658 -4.21643 1.74852 2.67326 3.04608 3.21233 3.31410 3.39260 3.43803 3.67217 4.37617 4.40534 4.76985 4.90896 5.03836 5.15802 5.18167 5.28748 5.32085 5.52774 5.65078 5.71069 5.88587 5.93133 5.96966 6.11853 6.15852 6.19664 6.25896 6.41761 6.47276 6.60929 6.63622 6.71537 6.93321 7.09602 7.17129 7.24118 7.33957 7.67400 8.38581 8.47162 8.81477 9.05330 9.44552 10.90123 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.005882 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.506111 B = 4759.266471 C = 5311.229809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.634 5.634 3 C 0.220 3.780 4 C -0.038 4.038 5 C -0.181 4.181 6 C -0.217 4.217 7 C -0.044 4.044 8 O -0.177 6.177 9 C 0.703 3.297 10 O -0.599 6.599 11 N -0.715 5.715 12 C 0.163 3.837 13 C -0.016 4.016 14 C -0.490 4.490 15 H 0.077 0.923 16 C 0.087 3.913 17 N -0.889 5.889 18 Si 0.870 3.130 19 H -0.278 1.278 20 H -0.295 1.295 21 H -0.251 1.251 22 C -0.188 4.188 23 C -0.180 4.180 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.200 0.800 32 H 0.404 0.596 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.265 0.735 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 13.103 -5.064 14.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.372 5.372 3 C 0.096 3.904 4 C -0.089 4.089 5 C -0.201 4.201 6 C -0.236 4.236 7 C -0.112 4.112 8 O -0.073 6.073 9 C 0.404 3.596 10 O -0.479 6.479 11 N -0.369 5.369 12 C 0.039 3.961 13 C -0.017 4.017 14 C -0.527 4.527 15 H 0.095 0.905 16 C -0.117 4.117 17 N -0.526 5.526 18 Si 0.699 3.301 19 H -0.205 1.205 20 H -0.222 1.222 21 H -0.176 1.176 22 C -0.226 4.226 23 C -0.217 4.217 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.131 0.869 28 H 0.109 0.891 29 H 0.168 0.832 30 H 0.163 0.837 31 H 0.217 0.783 32 H 0.240 0.760 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.688 13.147 -4.908 14.510 hybrid contribution 0.580 -0.035 0.845 1.025 sum 4.268 13.113 -4.064 14.376 Atomic orbital electron populations 1.21809 0.79337 1.03997 1.01606 1.47054 1.06561 1.04346 1.79196 1.19556 0.99301 0.84427 0.87156 1.23079 0.91371 0.98030 0.96428 1.21758 1.00872 1.03544 0.93935 1.21881 0.99269 1.03090 0.99375 1.23971 0.95600 1.04815 0.86863 1.83979 1.45133 1.55511 1.22707 1.15948 0.85276 0.80486 0.77901 1.90845 1.11998 1.86364 1.58662 1.45140 1.12042 1.03924 1.75811 1.21239 0.93217 0.81614 1.00023 1.19568 0.97132 0.89680 0.95319 1.20192 0.92319 1.51728 0.88484 0.90451 1.24875 0.96964 0.93346 0.96534 1.69920 1.32961 1.48138 1.01531 0.87132 0.86413 0.78339 0.78187 1.20459 1.22186 1.17577 1.23031 0.97182 0.97658 1.04725 1.22788 0.99797 1.06128 0.93029 0.92510 0.90108 0.91198 0.86943 0.89114 0.83193 0.83710 0.78340 0.75973 0.93624 0.92186 0.92476 0.91100 0.89180 0.89645 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.15 59.85 0.61 1.58 16 2 N -0.63 -9.92 2.86 -188.74 -0.54 -10.46 16 3 C 0.22 2.94 5.91 -5.19 -0.03 2.91 16 4 C -0.04 -0.57 6.90 -35.62 -0.25 -0.82 16 5 C -0.18 -2.91 10.81 -39.70 -0.43 -3.34 16 6 C -0.22 -3.04 10.91 -39.70 -0.43 -3.47 16 7 C -0.04 -0.56 12.09 29.42 0.36 -0.21 16 8 O -0.18 -2.55 10.65 5.74 0.06 -2.49 16 9 C 0.70 13.83 8.26 -86.92 -0.72 13.11 16 10 O -0.60 -13.42 15.98 5.29 0.08 -13.33 16 11 N -0.71 -14.29 5.15 -65.22 -0.34 -14.62 16 12 C 0.16 3.56 4.72 -4.04 -0.02 3.54 16 13 C -0.02 -0.35 0.93 -155.66 -0.14 -0.49 16 14 C -0.49 -12.80 8.88 -34.44 -0.31 -13.11 16 15 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 16 C 0.09 2.41 5.47 -17.82 -0.10 2.31 16 17 N -0.89 -26.21 13.96 55.43 0.77 -25.43 16 18 Si 0.87 22.11 25.17 -169.99 -4.28 17.83 16 19 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.25 -6.06 5.59 56.52 0.32 -5.74 16 22 C -0.19 -3.84 9.53 -26.69 -0.25 -4.10 16 23 C -0.18 -3.46 9.93 -26.70 -0.27 -3.72 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.08 1.17 6.45 -51.93 -0.34 0.84 16 26 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 27 H 0.11 1.50 7.50 -51.93 -0.39 1.11 16 28 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.15 2.52 8.06 -52.49 -0.42 2.10 16 30 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.20 1.67 8.06 -52.48 -0.42 1.25 16 32 H 0.40 7.51 6.04 -40.82 -0.25 7.26 16 33 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.06 1.46 3.59 -51.93 -0.19 1.28 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 38 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -32.56 327.16 -6.73 -39.28 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.44 Total: 10.10 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -1.98 Total: -5.80 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.10 Total: -50.52 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.15 Total: -15.83 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.28 Total: 17.83 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.56 -6.73 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331519021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.123 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds