Wall clock time and date at job start Tue Mar 31 2020 01:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46505 * 119.99868 * 2 1 4 4 C 1.50702 * 109.47005 * 89.99858 * 3 2 1 5 5 C 1.34516 * 125.78422 * 89.99687 * 4 3 2 6 6 C 1.41380 * 106.83863 * 179.97438 * 5 4 3 7 7 C 1.34516 * 106.84069 * 0.02562 * 6 5 4 8 8 O 1.34293 * 125.79348 * 269.69690 * 4 3 2 9 9 C 1.34769 * 120.00045 * 179.72480 * 2 1 3 10 10 O 1.21590 * 120.00197 * 184.97036 * 9 2 1 11 11 N 1.34784 * 120.00073 * 4.97744 * 9 2 1 12 12 C 1.46495 * 119.99627 * 184.99874 * 11 9 2 13 13 C 1.53006 * 109.46693 * 174.81104 * 12 11 9 14 14 C 1.50705 * 115.54929 * 304.25069 * 13 12 11 15 15 H 1.07998 * 120.00029 * 116.44703 * 14 13 12 16 16 C 1.37877 * 119.99677 * 296.45191 * 14 13 12 17 17 N 1.31523 * 119.99385 * 190.68167 * 16 14 13 18 18 Si 1.86801 * 120.00493 * 10.67568 * 16 14 13 19 19 H 1.48494 * 109.46863 * 95.55473 * 18 16 14 20 20 H 1.48499 * 109.47040 * 215.55487 * 18 16 14 21 21 H 1.48503 * 109.46921 * 335.55262 * 18 16 14 22 22 C 1.52997 * 117.49885 * 158.58603 * 13 12 11 23 23 C 1.52995 * 117.50057 * 89.92318 * 13 12 11 24 24 H 1.09000 * 109.47346 * 86.39171 * 1 2 3 25 25 H 1.08997 * 109.46707 * 206.39395 * 1 2 3 26 26 H 1.09004 * 109.46965 * 326.39027 * 1 2 3 27 27 H 1.08995 * 109.47248 * 210.00169 * 3 2 1 28 28 H 1.08996 * 109.47197 * 330.00389 * 3 2 1 29 29 H 1.07993 * 126.58358 * 359.97297 * 5 4 3 30 30 H 1.07997 * 126.58277 * 179.97438 * 6 5 4 31 31 H 1.08005 * 125.79198 * 179.97438 * 7 6 5 32 32 H 0.96994 * 119.99661 * 5.00077 * 11 9 2 33 33 H 1.09001 * 109.47387 * 294.80723 * 12 11 9 34 34 H 1.09003 * 109.47411 * 54.80960 * 12 11 9 35 35 H 0.96997 * 119.99523 * 179.97438 * 17 16 14 36 36 H 1.08999 * 117.49780 * 359.97438 * 22 13 12 37 37 H 1.09004 * 117.50301 * 145.01895 * 22 13 12 38 38 H 1.09000 * 117.49464 * 214.97888 * 23 13 12 39 39 H 1.09004 * 117.50076 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 6 3.5247 1.3852 2.1625 6 6 3.3503 2.0013 3.4230 7 6 2.1778 2.6590 3.3764 8 8 1.6389 2.4799 2.1594 9 6 2.1389 -1.1671 0.0056 10 8 3.3513 -1.1687 0.0968 11 7 1.4688 -2.3327 -0.0901 12 6 2.1889 -3.6031 0.0260 13 6 1.1876 -4.7599 0.0119 14 6 0.1053 -4.6956 1.0587 15 1 -0.9287 -4.6020 0.7613 16 6 0.4354 -4.7560 2.3960 17 7 -0.5076 -4.9116 3.2996 18 14 2.2216 -4.6170 2.9246 19 1 2.5215 -3.2094 3.2903 20 1 2.4603 -5.4951 4.0981 21 1 3.1030 -5.0362 1.8053 22 6 1.7119 -6.1434 -0.3779 23 6 0.8215 -5.3610 -1.3466 24 1 -0.3634 0.0647 -1.0256 25 1 -0.3632 -0.9205 0.4568 26 1 -0.3633 0.8559 0.5689 27 1 3.1499 1.1385 -0.5138 28 1 1.6084 2.0284 -0.5138 29 1 4.3613 0.7759 1.8542 30 1 4.0279 1.9525 4.2625 31 1 1.7453 3.2367 4.1800 32 1 0.5099 -2.3302 -0.2358 33 1 2.8775 -3.7084 -0.8124 34 1 2.7494 -3.6191 0.9607 35 1 -0.2754 -4.9545 4.2404 36 1 2.7701 -6.2294 -0.6248 37 1 1.2738 -7.0071 0.1224 38 1 -0.2020 -5.7102 -1.4831 39 1 1.2937 -4.9320 -2.2305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331519021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:07 Heat of formation + Delta-G solvation = 7.422394 kcal Electronic energy + Delta-G solvation = -22124.059565 eV Core-core repulsion = 18841.337172 eV Total energy + Delta-G solvation = -3282.722393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.50792 -41.18709 -38.85729 -36.69307 -35.12630 -34.30409 -33.93616 -31.76319 -28.71814 -28.03893 -27.36828 -25.80603 -23.17163 -22.70007 -21.79150 -21.24467 -20.70743 -19.31424 -18.39637 -18.25628 -17.55892 -17.22593 -16.78879 -16.53034 -15.73077 -15.44914 -15.25479 -14.94533 -14.78950 -14.60251 -13.98339 -13.84676 -13.77839 -13.71233 -13.59121 -13.34188 -13.12726 -12.63197 -12.56881 -12.10420 -11.99383 -11.57332 -11.35480 -10.92713 -10.89164 -10.71785 -10.42353 -10.09041 -9.62994 -9.43063 -8.36508 -6.36080 0.64006 1.24908 1.33361 1.37730 1.52629 1.87288 1.99070 2.24202 2.27725 2.90740 3.09559 3.38246 3.75912 4.03651 4.06060 4.09498 4.21687 4.30387 4.31476 4.47797 4.49990 4.55924 4.68566 4.76574 4.86342 4.87849 4.93978 4.98311 5.07387 5.15942 5.25840 5.41998 5.51854 5.53390 5.63368 5.68789 5.88048 6.16769 6.27865 6.69730 7.00541 7.31270 7.55205 8.77837 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.005882 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.506111 B = 4759.266471 C = 5311.229809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.629 5.629 3 C 0.217 3.783 4 C -0.047 4.047 5 C -0.212 4.212 6 C -0.240 4.240 7 C -0.032 4.032 8 O -0.180 6.180 9 C 0.696 3.304 10 O -0.632 6.632 11 N -0.717 5.717 12 C 0.170 3.830 13 C -0.044 4.044 14 C -0.470 4.470 15 H 0.051 0.949 16 C 0.043 3.957 17 N -0.933 5.933 18 Si 0.915 3.085 19 H -0.302 1.302 20 H -0.298 1.298 21 H -0.230 1.230 22 C -0.185 4.185 23 C -0.151 4.151 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.161 0.839 31 H 0.243 0.757 32 H 0.409 0.591 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 14.171 -6.535 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.365 5.365 3 C 0.094 3.906 4 C -0.098 4.098 5 C -0.232 4.232 6 C -0.259 4.259 7 C -0.100 4.100 8 O -0.076 6.076 9 C 0.397 3.603 10 O -0.514 6.514 11 N -0.372 5.372 12 C 0.046 3.954 13 C -0.046 4.046 14 C -0.507 4.507 15 H 0.069 0.931 16 C -0.156 4.156 17 N -0.573 5.573 18 Si 0.745 3.255 19 H -0.230 1.230 20 H -0.226 1.226 21 H -0.153 1.153 22 C -0.223 4.223 23 C -0.188 4.188 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.126 0.874 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.178 0.822 31 H 0.259 0.741 32 H 0.247 0.753 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.569 14.229 -6.410 16.009 hybrid contribution 0.560 -0.302 1.276 1.426 sum 4.129 13.928 -5.135 15.408 Atomic orbital electron populations 1.21984 0.77478 1.03601 1.03780 1.47136 1.07737 1.03794 1.77865 1.19823 0.99884 0.84217 0.86678 1.23272 0.91213 0.98191 0.97126 1.21877 1.01216 1.04498 0.95648 1.22175 1.00653 1.03784 0.99259 1.24803 0.94774 1.03575 0.86807 1.83986 1.45027 1.55263 1.23335 1.16170 0.85034 0.81353 0.77768 1.90818 1.13527 1.87001 1.60088 1.45073 1.12243 1.03730 1.76119 1.21034 0.93146 0.82129 0.99126 1.19455 0.97234 0.91171 0.96694 1.20341 0.92325 1.48949 0.89107 0.93092 1.25391 0.99073 0.94092 0.97044 1.70012 1.34405 1.51118 1.01749 0.86417 0.84190 0.76639 0.78285 1.23001 1.22553 1.15304 1.23072 0.98787 0.95818 1.04653 1.22844 0.99943 1.03674 0.92354 0.89255 0.92248 0.89550 0.87408 0.84956 0.85096 0.82167 0.74073 0.75333 0.92154 0.94997 0.92696 0.88913 0.90082 0.89507 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.73 10.15 127.77 1.30 3.02 16 2 N -0.63 -18.77 2.86 -869.30 -2.48 -21.25 16 3 C 0.22 5.45 5.91 85.63 0.51 5.96 16 4 C -0.05 -1.37 6.90 24.83 0.17 -1.20 16 5 C -0.21 -6.91 10.81 22.19 0.24 -6.67 16 6 C -0.24 -6.54 10.91 22.19 0.24 -6.30 16 7 C -0.03 -0.74 12.09 66.97 0.81 0.07 16 8 O -0.18 -4.83 10.65 -2.37 -0.03 -4.85 16 9 C 0.70 26.95 8.26 179.05 1.48 28.43 16 10 O -0.63 -28.41 15.98 -4.00 -0.06 -28.48 16 11 N -0.72 -28.00 5.15 -478.52 -2.47 -30.47 16 12 C 0.17 7.21 4.72 86.38 0.41 7.61 16 13 C -0.04 -1.90 0.93 -52.93 -0.05 -1.95 16 14 C -0.47 -24.51 8.88 25.60 0.23 -24.28 16 15 H 0.05 2.89 8.06 -2.91 -0.02 2.86 16 16 C 0.04 2.43 5.47 84.65 0.46 2.89 16 17 N -0.93 -56.26 13.96 21.45 0.30 -55.96 16 18 Si 0.92 46.39 25.17 68.60 1.73 48.11 16 19 H -0.30 -16.37 7.11 99.48 0.71 -15.66 16 20 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 21 H -0.23 -10.72 5.59 99.48 0.56 -10.16 16 22 C -0.19 -7.08 9.53 30.62 0.29 -6.79 16 23 C -0.15 -5.31 9.93 30.62 0.30 -5.01 16 24 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.66 6.45 -2.39 -0.02 1.65 16 26 H 0.09 1.76 8.10 -2.38 -0.02 1.74 16 27 H 0.11 2.81 7.50 -2.39 -0.02 2.79 16 28 H 0.13 2.19 8.07 -2.39 -0.02 2.17 16 29 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 30 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 31 H 0.24 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.41 14.84 6.04 -92.71 -0.56 14.28 16 33 H 0.06 2.37 8.10 -2.39 -0.02 2.35 16 34 H 0.03 1.54 3.59 -2.39 -0.01 1.53 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 38 H 0.09 3.04 8.14 -2.39 -0.02 3.03 16 39 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 Total: -1.00 -71.79 327.16 3.72 -68.06 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.35 Total: 29.03 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 6.39 Total: -4.20 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -4.65 Total: -107.68 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.09 Total: -33.33 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.73 Total: 48.11 kcal Total: -71.79 3.72 -68.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331519021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.487 kcal (2) G-P(sol) polarization free energy of solvation -71.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds