Wall clock time and date at job start Tue Mar 31 2020 01:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 120.00203 * 2 1 4 4 C 1.50696 * 109.47120 * 269.99796 * 3 2 1 5 5 H 1.07995 * 120.00211 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99978 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99962 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99868 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.46970 * 90.00478 * 8 6 4 10 10 H 1.48500 * 109.46976 * 210.00069 * 8 6 4 11 11 H 1.48499 * 109.47212 * 330.00227 * 8 6 4 12 12 C 1.34778 * 119.99592 * 179.97438 * 2 1 3 13 13 O 1.21615 * 119.99927 * 174.49521 * 12 2 1 14 14 C 1.47419 * 120.00202 * 354.76228 * 12 2 1 15 15 C 1.36091 * 126.44762 * 173.67861 * 14 12 2 16 16 O 1.34252 * 106.94869 * 179.97438 * 15 14 12 17 17 C 1.34052 * 108.22899 * 359.97438 * 16 15 14 18 18 C 1.50696 * 125.37816 * 180.02562 * 17 16 15 19 19 C 1.54273 * 110.03049 * 57.19821 * 18 17 16 20 20 C 1.54892 * 104.19181 * 217.10021 * 19 18 17 21 21 C 1.54885 * 102.74878 * 37.94296 * 20 19 18 22 22 C 1.53871 * 110.03956 * 300.03020 * 18 17 16 23 23 N 1.29933 * 109.24185 * 359.76574 * 17 16 15 24 24 H 1.09000 * 109.47371 * 265.32765 * 1 2 3 25 25 H 1.08997 * 109.46672 * 25.33272 * 1 2 3 26 26 H 1.09000 * 109.47124 * 145.32442 * 1 2 3 27 27 H 1.09005 * 109.47482 * 29.99985 * 3 2 1 28 28 H 1.09005 * 109.47497 * 149.99517 * 3 2 1 29 29 H 0.96995 * 119.99574 * 180.02562 * 7 6 4 30 30 H 1.07996 * 126.52622 * 359.97438 * 15 14 12 31 31 H 1.09009 * 110.01542 * 178.63503 * 18 17 16 32 32 H 1.08996 * 110.48285 * 335.77749 * 19 18 17 33 33 H 1.09001 * 110.48728 * 98.42435 * 19 18 17 34 34 H 1.08997 * 110.75580 * 279.62538 * 20 19 18 35 35 H 1.09003 * 110.91030 * 156.33005 * 20 19 18 36 36 H 1.09008 * 110.48464 * 203.37355 * 21 20 19 37 37 H 1.09004 * 110.60142 * 80.79318 * 21 20 19 38 38 H 1.08999 * 110.03264 * 238.57699 * 22 18 17 39 39 H 1.09007 * 110.02870 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0983 1.0957 -2.2417 6 6 3.1271 2.8773 -1.6727 7 7 3.3459 3.2572 -2.9127 8 14 3.7340 3.9286 -0.2529 9 1 5.1071 3.5067 0.1237 10 1 3.7500 5.3552 -0.6648 11 1 2.8274 3.7595 0.9111 12 6 2.1388 -1.1673 0.0005 13 8 3.3508 -1.1698 -0.1005 14 6 1.4063 -2.4412 0.1176 15 6 1.9353 -3.6907 0.0124 16 8 0.9256 -4.5588 0.1829 17 6 -0.1990 -3.8589 0.3889 18 6 -1.5643 -4.4512 0.6256 19 6 -1.5275 -5.3920 1.8477 20 6 -2.4760 -6.5539 1.4611 21 6 -2.1839 -6.7460 -0.0478 22 6 -1.9817 -5.3121 -0.5795 23 7 0.0752 -2.5892 0.3577 24 1 -0.3634 -0.0837 1.0242 25 1 -0.3632 0.9288 -0.4397 26 1 -0.3633 -0.8451 -0.5847 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1384 0.5139 29 1 3.8234 4.0827 -3.0899 30 1 2.9704 -3.9369 -0.1729 31 1 -2.2928 -3.6565 0.7870 32 1 -0.5163 -5.7637 2.0125 33 1 -1.8958 -4.8783 2.7357 34 1 -3.5169 -6.2721 1.6203 35 1 -2.2322 -7.4575 2.0199 36 1 -3.0312 -7.2206 -0.5430 37 1 -1.2794 -7.3372 -0.1911 38 1 -2.9131 -4.9358 -1.0025 39 1 -1.1968 -5.3012 -1.3359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332382515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:31 Heat of formation + Delta-G solvation = -13.673220 kcal Electronic energy + Delta-G solvation = -21497.175582 eV Core-core repulsion = 18213.538414 eV Total energy + Delta-G solvation = -3283.637168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.36604 -38.87228 -38.31866 -35.03674 -34.60658 -32.44551 -31.35243 -29.09152 -28.64889 -28.05658 -25.90028 -24.03912 -22.50592 -21.91498 -21.03534 -20.29189 -18.76098 -17.23929 -16.94698 -16.73048 -16.37669 -15.80978 -15.64748 -15.23342 -14.54338 -14.07526 -13.81704 -13.69585 -13.57432 -12.96186 -12.37198 -12.23887 -12.12941 -12.01574 -11.85336 -11.49617 -11.48451 -11.45057 -11.15436 -11.08750 -10.93855 -10.88203 -10.51818 -10.26062 -10.09382 -9.54409 -9.29617 -8.87472 -8.56018 -7.64432 -6.05569 -4.04214 1.29743 2.21309 2.60339 3.31723 3.37547 3.39226 3.63034 3.81520 3.99452 4.20670 4.23793 4.42309 4.59266 4.98306 5.00509 5.04469 5.10151 5.13864 5.25035 5.28542 5.29295 5.50947 5.54308 5.60171 5.72079 5.77506 5.81944 5.92365 5.96979 5.99030 6.09302 6.19394 6.54726 6.74013 6.93203 7.35338 7.60997 7.63989 8.24840 8.48880 8.88947 8.99385 9.54189 11.07928 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039851 B = 0.003606 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.448695 B = 7763.068256 C = 7874.965781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.578 5.578 3 C 0.216 3.784 4 C -0.527 4.527 5 H 0.075 0.925 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.265 1.265 12 C 0.585 3.415 13 O -0.537 6.537 14 C -0.053 4.053 15 C -0.003 4.003 16 O -0.198 6.198 17 C 0.191 3.809 18 C 0.005 3.995 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.121 4.121 23 N -0.451 5.451 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.264 0.736 30 H 0.229 0.771 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.234 -19.726 9.090 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.308 5.308 3 C 0.095 3.905 4 C -0.566 4.566 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.371 3.629 13 O -0.414 6.414 14 C -0.174 4.174 15 C -0.076 4.076 16 O -0.084 6.084 17 C -0.018 4.018 18 C -0.014 4.014 19 C -0.158 4.158 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.159 4.159 23 N -0.182 5.182 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.245 0.755 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.957 -19.047 9.011 24.736 hybrid contribution 0.970 0.284 0.376 1.078 sum -11.987 -18.764 9.387 24.164 Atomic orbital electron populations 1.21811 0.79589 1.02717 1.00996 1.47663 1.07164 1.06343 1.69587 1.19739 0.92350 0.79818 0.98557 1.21321 1.36913 1.07170 0.91177 0.90710 1.24860 0.95245 0.97303 0.95622 1.69901 1.41496 1.23586 1.18650 0.86841 0.80116 0.79748 0.82945 1.19876 1.21033 1.19018 1.16767 0.86135 0.81770 0.78275 1.90796 1.12952 1.86487 1.51203 1.22147 0.90052 0.95976 1.09189 1.25246 0.93460 0.87167 1.01725 1.84308 1.16894 1.39219 1.67957 1.26259 0.89549 0.85537 1.00454 1.20421 0.85769 0.98447 0.96762 1.22491 1.00979 0.95788 0.96577 1.22496 0.99500 0.98086 0.95997 1.22380 1.01850 0.96296 0.95685 1.22253 1.02263 0.94746 0.96636 1.71082 1.13634 1.16316 1.17124 0.93529 0.91417 0.90515 0.94863 0.94587 0.92568 0.75472 0.86582 0.90820 0.90530 0.91019 0.91118 0.91229 0.91320 0.90364 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.71 9.31 59.85 0.56 2.27 16 2 N -0.58 -13.20 2.86 -184.24 -0.53 -13.72 16 3 C 0.22 5.54 4.17 -5.20 -0.02 5.52 16 4 C -0.53 -15.70 9.94 -34.44 -0.34 -16.04 16 5 H 0.07 2.45 8.06 -52.49 -0.42 2.03 16 6 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 8 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 9 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 12 C 0.59 13.20 7.65 -12.52 -0.10 13.11 16 13 O -0.54 -13.74 16.53 5.26 0.09 -13.65 16 14 C -0.05 -0.97 6.59 -83.02 -0.55 -1.51 16 15 C 0.00 -0.04 11.95 29.96 0.36 0.32 16 16 O -0.20 -2.60 10.55 6.52 0.07 -2.53 16 17 C 0.19 2.45 6.50 -13.08 -0.09 2.37 16 18 C 0.01 0.05 3.44 -90.65 -0.31 -0.26 16 19 C -0.12 -0.88 6.35 -25.07 -0.16 -1.04 16 20 C -0.12 -0.70 6.91 -24.74 -0.17 -0.87 16 21 C -0.12 -0.77 6.83 -25.08 -0.17 -0.94 16 22 C -0.12 -0.92 6.45 -25.62 -0.17 -1.09 16 23 N -0.45 -7.19 8.11 -7.66 -0.06 -7.25 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 26 H 0.08 1.37 5.87 -51.93 -0.30 1.07 16 27 H 0.03 0.81 7.13 -51.93 -0.37 0.44 16 28 H 0.04 0.97 6.93 -51.93 -0.36 0.61 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.23 2.74 8.06 -52.49 -0.42 2.32 16 31 H 0.12 0.95 8.14 -51.92 -0.42 0.52 16 32 H 0.07 0.61 7.71 -51.93 -0.40 0.21 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.64 7.67 -51.93 -0.40 0.24 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -35.11 324.68 -6.33 -41.44 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -5.64 Total: -2.88 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.25 Total: 3.87 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.19 Total: -48.41 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.16 Total: -16.18 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.11 -6.33 -41.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332382515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.764 kcal (2) G-P(sol) polarization free energy of solvation -35.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds