Wall clock time and date at job start Tue Mar 31 2020 01:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 120.00203 * 2 1 4 4 C 1.50696 * 109.47120 * 269.99796 * 3 2 1 5 5 H 1.07995 * 120.00211 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99978 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99962 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99868 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.46970 * 90.00478 * 8 6 4 10 10 H 1.48500 * 109.46976 * 210.00069 * 8 6 4 11 11 H 1.48499 * 109.47212 * 330.00227 * 8 6 4 12 12 C 1.34778 * 119.99592 * 179.97438 * 2 1 3 13 13 O 1.21615 * 119.99927 * 174.49521 * 12 2 1 14 14 C 1.47419 * 120.00202 * 354.76228 * 12 2 1 15 15 C 1.36091 * 126.44762 * 173.67861 * 14 12 2 16 16 O 1.34252 * 106.94869 * 179.97438 * 15 14 12 17 17 C 1.34052 * 108.22899 * 359.97438 * 16 15 14 18 18 C 1.50696 * 125.37816 * 180.02562 * 17 16 15 19 19 C 1.54273 * 110.03049 * 57.19821 * 18 17 16 20 20 C 1.54892 * 104.19181 * 217.10021 * 19 18 17 21 21 C 1.54885 * 102.74878 * 37.94296 * 20 19 18 22 22 C 1.53871 * 110.03956 * 300.03020 * 18 17 16 23 23 N 1.29933 * 109.24185 * 359.76574 * 17 16 15 24 24 H 1.09000 * 109.47371 * 265.32765 * 1 2 3 25 25 H 1.08997 * 109.46672 * 25.33272 * 1 2 3 26 26 H 1.09000 * 109.47124 * 145.32442 * 1 2 3 27 27 H 1.09005 * 109.47482 * 29.99985 * 3 2 1 28 28 H 1.09005 * 109.47497 * 149.99517 * 3 2 1 29 29 H 0.96995 * 119.99574 * 180.02562 * 7 6 4 30 30 H 1.07996 * 126.52622 * 359.97438 * 15 14 12 31 31 H 1.09009 * 110.01542 * 178.63503 * 18 17 16 32 32 H 1.08996 * 110.48285 * 335.77749 * 19 18 17 33 33 H 1.09001 * 110.48728 * 98.42435 * 19 18 17 34 34 H 1.08997 * 110.75580 * 279.62538 * 20 19 18 35 35 H 1.09003 * 110.91030 * 156.33005 * 20 19 18 36 36 H 1.09008 * 110.48464 * 203.37355 * 21 20 19 37 37 H 1.09004 * 110.60142 * 80.79318 * 21 20 19 38 38 H 1.08999 * 110.03264 * 238.57699 * 22 18 17 39 39 H 1.09007 * 110.02870 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0983 1.0957 -2.2417 6 6 3.1271 2.8773 -1.6727 7 7 3.3459 3.2572 -2.9127 8 14 3.7340 3.9286 -0.2529 9 1 5.1071 3.5067 0.1237 10 1 3.7500 5.3552 -0.6648 11 1 2.8274 3.7595 0.9111 12 6 2.1388 -1.1673 0.0005 13 8 3.3508 -1.1698 -0.1005 14 6 1.4063 -2.4412 0.1176 15 6 1.9353 -3.6907 0.0124 16 8 0.9256 -4.5588 0.1829 17 6 -0.1990 -3.8589 0.3889 18 6 -1.5643 -4.4512 0.6256 19 6 -1.5275 -5.3920 1.8477 20 6 -2.4760 -6.5539 1.4611 21 6 -2.1839 -6.7460 -0.0478 22 6 -1.9817 -5.3121 -0.5795 23 7 0.0752 -2.5892 0.3577 24 1 -0.3634 -0.0837 1.0242 25 1 -0.3632 0.9288 -0.4397 26 1 -0.3633 -0.8451 -0.5847 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1384 0.5139 29 1 3.8234 4.0827 -3.0899 30 1 2.9704 -3.9369 -0.1729 31 1 -2.2928 -3.6565 0.7870 32 1 -0.5163 -5.7637 2.0125 33 1 -1.8958 -4.8783 2.7357 34 1 -3.5169 -6.2721 1.6203 35 1 -2.2322 -7.4575 2.0199 36 1 -3.0312 -7.2206 -0.5430 37 1 -1.2794 -7.3372 -0.1911 38 1 -2.9131 -4.9358 -1.0025 39 1 -1.1968 -5.3012 -1.3359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332382515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:28 Heat of formation + Delta-G solvation = -38.405306 kcal Electronic energy + Delta-G solvation = -21498.248046 eV Core-core repulsion = 18213.538414 eV Total energy + Delta-G solvation = -3284.709632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -44.53108 -40.59199 -38.95500 -36.81020 -35.94838 -34.64120 -32.36010 -30.57509 -29.63337 -29.06696 -27.51417 -25.79174 -23.67092 -23.36176 -21.61568 -21.40156 -20.04122 -19.17917 -18.56384 -17.92050 -17.62456 -17.17540 -16.69903 -16.43405 -16.20071 -15.73203 -14.98919 -14.83123 -14.60138 -14.32028 -14.24579 -13.88254 -13.75666 -13.31425 -13.04607 -12.79939 -12.52997 -12.45988 -12.23604 -12.01999 -12.00841 -11.91820 -11.77669 -11.66591 -11.60945 -11.41505 -11.07614 -10.84785 -10.10238 -9.46920 -8.35857 -6.42253 0.05635 0.96870 1.32846 1.37073 1.46120 1.52344 2.08256 2.27635 2.30419 2.75811 2.97881 3.56194 3.60175 3.66031 3.85314 4.05662 4.43517 4.46483 4.46835 4.49238 4.54825 4.56076 4.63298 4.67443 4.78662 4.82216 4.86176 4.90301 4.96696 5.10039 5.14846 5.26988 5.30973 5.34572 5.40208 5.51769 5.54604 6.18008 6.39085 6.56628 6.58232 7.10109 7.24996 8.81435 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039851 B = 0.003606 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.448695 B = 7763.068256 C = 7874.965781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.590 5.590 3 C 0.225 3.775 4 C -0.540 4.540 5 H 0.024 0.976 6 C 0.012 3.988 7 N -0.945 5.945 8 Si 0.952 3.048 9 H -0.272 1.272 10 H -0.272 1.272 11 H -0.238 1.238 12 C 0.579 3.421 13 O -0.581 6.581 14 C -0.091 4.091 15 C 0.023 3.977 16 O -0.189 6.189 17 C 0.207 3.793 18 C 0.003 3.997 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.120 4.120 23 N -0.472 5.472 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.025 0.975 29 H 0.270 0.730 30 H 0.251 0.749 31 H 0.127 0.873 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.848 -20.834 11.210 27.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.319 5.319 3 C 0.103 3.897 4 C -0.579 4.579 5 H 0.043 0.957 6 C -0.187 4.187 7 N -0.585 5.585 8 Si 0.774 3.226 9 H -0.198 1.198 10 H -0.197 1.197 11 H -0.161 1.161 12 C 0.367 3.633 13 O -0.462 6.462 14 C -0.209 4.209 15 C -0.052 4.052 16 O -0.075 6.075 17 C -0.002 4.002 18 C -0.017 4.017 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.158 4.158 23 N -0.201 5.201 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.267 0.733 31 H 0.145 0.855 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.627 -20.167 11.138 27.290 hybrid contribution 1.403 0.488 -0.380 1.534 sum -13.224 -19.679 10.758 26.036 Atomic orbital electron populations 1.21931 0.77184 1.02826 1.02588 1.47777 1.08737 1.05697 1.69695 1.19466 0.92741 0.81752 0.95766 1.21494 1.37290 1.07020 0.92069 0.95744 1.25895 0.95063 0.98774 0.98919 1.70053 1.42468 1.24533 1.21398 0.85655 0.79683 0.77696 0.79569 1.19767 1.19734 1.16092 1.17316 0.85969 0.83035 0.76981 1.90746 1.14858 1.87411 1.53184 1.21608 0.91357 0.94866 1.13100 1.25615 0.94442 0.86233 0.98869 1.84371 1.16808 1.38661 1.67649 1.27126 0.90529 0.84796 0.97777 1.20778 0.83471 0.99232 0.98190 1.22506 1.01002 0.96077 0.96087 1.22493 0.99773 0.97689 0.95441 1.22387 1.02233 0.95181 0.96227 1.22278 1.02245 0.95628 0.95680 1.70983 1.12521 1.17929 1.18692 0.91102 0.91669 0.89969 0.92672 0.95704 0.92095 0.73287 0.85508 0.91878 0.89621 0.89673 0.90208 0.89817 0.91890 0.88990 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.56 9.31 127.77 1.19 4.75 16 2 N -0.59 -27.31 2.86 -855.05 -2.44 -29.75 16 3 C 0.22 11.61 4.17 85.63 0.36 11.96 16 4 C -0.54 -33.27 9.94 25.60 0.25 -33.01 16 5 H 0.02 1.69 8.06 -2.91 -0.02 1.67 16 6 C 0.01 0.70 5.47 84.66 0.46 1.17 16 7 N -0.94 -61.01 13.96 21.45 0.30 -60.71 16 8 Si 0.95 45.17 27.47 68.60 1.88 47.06 16 9 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 12 C 0.58 26.72 7.65 86.66 0.66 27.38 16 13 O -0.58 -30.75 16.53 -4.08 -0.07 -30.81 16 14 C -0.09 -3.27 6.59 40.41 0.27 -3.00 16 15 C 0.02 0.64 11.95 67.32 0.80 1.45 16 16 O -0.19 -4.67 10.55 0.41 0.00 -4.66 16 17 C 0.21 5.01 6.50 88.39 0.57 5.58 16 18 C 0.00 0.04 3.44 -10.82 -0.04 0.00 16 19 C -0.12 -1.42 6.35 31.67 0.20 -1.22 16 20 C -0.12 -0.95 6.91 31.88 0.22 -0.73 16 21 C -0.12 -1.18 6.83 31.66 0.22 -0.97 16 22 C -0.12 -1.56 6.45 31.31 0.20 -1.36 16 23 N -0.47 -14.57 8.11 -293.04 -2.38 -16.95 16 24 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 26 H 0.08 2.93 5.87 -2.39 -0.01 2.91 16 27 H 0.06 2.60 7.13 -2.38 -0.02 2.58 16 28 H 0.02 1.34 6.93 -2.38 -0.02 1.32 16 29 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 30 H 0.25 5.76 8.06 -2.91 -0.02 5.73 16 31 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.06 0.90 7.71 -2.39 -0.02 0.88 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 0.89 7.67 -2.38 -0.02 0.87 16 Total: -1.00 -79.07 324.68 3.66 -75.41 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.99 Total: 8.42 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.37 Total: 12.00 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -4.52 Total: -107.41 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.06 Total: -35.48 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.06 kcal Total: -79.07 3.66 -75.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332382515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.004 kcal (2) G-P(sol) polarization free energy of solvation -79.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds