Wall clock time and date at job start Tue Mar 31 2020 00:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47039 * 2 1 4 4 C 1.36782 * 120.00178 * 265.01690 * 3 2 1 5 5 H 1.07997 * 119.99953 * 144.55346 * 4 3 2 6 6 C 1.39116 * 119.99558 * 324.54770 * 4 3 2 7 7 N 1.31321 * 119.99455 * 154.28842 * 6 4 3 8 8 Si 1.86792 * 120.00485 * 334.28844 * 6 4 3 9 9 H 1.48491 * 109.47339 * 95.57034 * 8 6 4 10 10 H 1.48503 * 109.46898 * 335.57187 * 8 6 4 11 11 H 1.48498 * 109.47221 * 215.57702 * 8 6 4 12 12 C 1.34778 * 119.99807 * 85.01765 * 3 2 1 13 13 O 1.21550 * 119.99957 * 183.06761 * 12 3 2 14 14 C 1.48169 * 120.00270 * 3.06394 * 12 3 2 15 15 N 1.31581 * 127.15931 * 354.79629 * 14 12 3 16 16 O 1.21430 * 111.49842 * 179.78578 * 15 14 12 17 17 C 1.33213 * 111.59138 * 0.44927 * 16 15 14 18 18 C 1.35343 * 106.65125 * 359.78131 * 17 16 15 19 19 C 1.50067 * 124.94427 * 179.81062 * 18 17 16 20 20 C 1.53544 * 108.23241 * 343.95175 * 19 18 17 21 21 H 1.08995 * 109.47135 * 289.17500 * 20 19 18 22 22 C 1.53004 * 109.46307 * 169.19291 * 20 19 18 23 23 C 1.53107 * 109.50231 * 49.18855 * 20 19 18 24 24 C 1.50600 * 129.58886 * 179.91660 * 17 16 15 25 25 H 1.08999 * 109.47592 * 185.34328 * 1 2 3 26 26 H 1.09006 * 109.47411 * 305.34705 * 1 2 3 27 27 H 1.09003 * 109.47026 * 65.34357 * 1 2 3 28 28 H 1.08997 * 109.47235 * 240.00371 * 2 1 3 29 29 H 1.08996 * 109.47271 * 119.99949 * 2 1 3 30 30 H 0.96999 * 119.99691 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.70573 * 103.64685 * 19 18 17 32 32 H 1.09006 * 109.70589 * 224.27198 * 19 18 17 33 33 H 1.09004 * 109.46746 * 299.96978 * 22 20 19 34 34 H 1.09002 * 109.46944 * 59.96478 * 22 20 19 35 35 H 1.08999 * 109.47207 * 179.97438 * 22 20 19 36 36 H 1.08999 * 109.43080 * 170.06776 * 23 20 19 37 37 H 1.08994 * 109.38855 * 50.19628 * 23 20 19 38 38 H 1.08998 * 109.69624 * 282.89595 * 24 17 16 39 39 H 1.09003 * 109.69577 * 43.48148 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3432 1.9918 -1.1801 5 1 2.1508 3.0460 -1.3135 6 6 2.9218 1.2546 -2.2083 7 7 2.7815 1.6439 -3.4546 8 14 3.8980 -0.2889 -1.8162 9 1 3.0193 -1.4782 -1.9521 10 1 4.4120 -0.2095 -0.4253 11 1 5.0389 -0.4060 -2.7595 12 6 2.1473 2.0503 1.1628 13 8 2.4990 3.2138 1.1587 14 6 1.8603 1.3677 2.4462 15 7 1.3833 0.1525 2.6108 16 8 1.2617 -0.1223 3.7873 17 6 1.6375 0.8893 4.5684 18 6 2.0358 1.8874 3.7455 19 6 2.5388 3.2264 4.1993 20 6 2.1484 3.4121 5.6727 21 1 1.0711 3.5596 5.7473 22 6 2.8710 4.6350 6.2413 23 6 2.5492 2.1670 6.4685 24 6 1.6521 0.9875 6.0711 25 1 -0.3634 -1.0232 0.0957 26 1 -0.3634 0.5946 0.8383 27 1 -0.3633 0.4287 -0.9340 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.1851 1.1302 -4.1715 31 1 3.6235 3.2650 4.0985 32 1 2.0847 4.0131 3.5968 33 1 3.9485 4.4874 6.1670 34 1 2.5859 5.5215 5.6747 35 1 2.5937 4.7673 7.2871 36 1 2.4358 2.3657 7.5342 37 1 3.5890 1.9200 6.2544 38 1 0.6397 1.1560 6.4381 39 1 2.0485 0.0651 6.4956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334837381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:34 Heat of formation + Delta-G solvation = 31.052899 kcal Electronic energy + Delta-G solvation = -22550.744123 eV Core-core repulsion = 19269.046425 eV Total energy + Delta-G solvation = -3281.697698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.61830 -38.72851 -38.09509 -35.23653 -33.48976 -32.38483 -32.21938 -30.12206 -29.69673 -27.14192 -25.72171 -23.80755 -23.02208 -22.59156 -21.75289 -19.78965 -18.84431 -17.37900 -17.00047 -16.70173 -16.06372 -15.56418 -14.86782 -14.40585 -14.12360 -13.91624 -13.72407 -13.47535 -13.26811 -12.94343 -12.73211 -12.55755 -12.42343 -12.14562 -12.00764 -11.78001 -11.47546 -11.22642 -11.00120 -10.87212 -10.72479 -10.68912 -10.43530 -10.03811 -9.93052 -9.56677 -9.19801 -8.79990 -8.73772 -7.84511 -6.53545 -4.00534 1.61132 2.15401 3.03263 3.19294 3.20565 3.26615 4.06068 4.07138 4.19784 4.49598 4.61447 4.68840 4.73913 4.96516 5.06984 5.14648 5.29682 5.35852 5.40064 5.57369 5.68093 5.68461 5.73144 5.79858 5.84907 5.89068 5.99920 6.05181 6.06790 6.15102 6.23651 6.34182 6.45745 6.54204 6.57141 6.88252 7.43284 8.17663 8.36069 8.54825 8.85003 9.21150 9.68392 10.57152 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025577 B = 0.005650 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.457277 B = 4954.316201 C = 5467.980924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.078 3.922 3 N -0.434 5.434 4 C -0.317 4.317 5 H 0.111 0.889 6 C 0.067 3.933 7 N -0.845 5.845 8 Si 0.871 3.129 9 H -0.271 1.271 10 H -0.263 1.263 11 H -0.283 1.283 12 C 0.520 3.480 13 O -0.555 6.555 14 C 0.012 3.988 15 N -0.346 5.346 16 O 0.102 5.898 17 C -0.055 4.055 18 C -0.157 4.157 19 C -0.037 4.037 20 C -0.095 4.095 21 H 0.073 0.927 22 C -0.145 4.145 23 C -0.113 4.113 24 C -0.030 4.030 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.277 0.723 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.956 -2.635 19.015 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.045 4.045 3 N -0.154 5.154 4 C -0.444 4.444 5 H 0.129 0.871 6 C -0.141 4.141 7 N -0.480 5.480 8 Si 0.698 3.302 9 H -0.198 1.198 10 H -0.188 1.188 11 H -0.209 1.209 12 C 0.308 3.692 13 O -0.436 6.436 14 C -0.146 4.146 15 N -0.056 5.056 16 O 0.037 5.963 17 C -0.119 4.119 18 C -0.162 4.162 19 C -0.074 4.074 20 C -0.114 4.114 21 H 0.092 0.908 22 C -0.202 4.202 23 C -0.150 4.150 24 C -0.068 4.068 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.101 -3.018 17.913 18.287 hybrid contribution 0.747 -0.391 0.144 0.855 sum -1.355 -3.409 18.057 18.426 Atomic orbital electron populations 1.21934 0.95799 1.00844 1.01966 1.22075 0.95278 0.84899 1.02268 1.43661 1.54394 1.11905 1.05400 1.19080 1.40471 0.97656 0.87222 0.87139 1.25345 0.96102 0.98102 0.94535 1.69758 1.39370 1.40052 0.98828 0.87042 0.80683 0.82857 0.79664 1.19806 1.18758 1.20945 1.16900 0.84198 0.87297 0.80824 1.90632 1.51646 1.15805 1.85567 1.23633 1.02055 0.91577 0.97334 1.74764 1.19016 1.16655 0.95126 1.84666 1.62490 1.37144 1.12000 1.23970 1.03495 0.88166 0.96285 1.20618 1.05869 0.99069 0.90612 1.20000 1.01173 0.91931 0.94304 1.21314 1.00715 0.94810 0.94541 0.90810 1.21799 1.00583 0.97470 1.00394 1.21707 0.99744 0.93584 1.00010 1.20149 1.01858 1.00261 0.84565 0.92649 0.93226 0.92112 0.91081 0.89845 0.91247 0.90205 0.89130 0.92474 0.92235 0.92679 0.90418 0.91139 0.89232 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.72 37.16 0.36 -2.58 16 2 C 0.08 1.78 4.38 -4.04 -0.02 1.76 16 3 N -0.43 -11.34 2.20 -115.78 -0.26 -11.60 16 4 C -0.32 -9.19 9.38 -15.02 -0.14 -9.33 16 5 H 0.11 3.53 7.83 -52.49 -0.41 3.12 16 6 C 0.07 1.89 5.22 -17.44 -0.09 1.79 16 7 N -0.85 -24.24 13.95 55.50 0.77 -23.47 16 8 Si 0.87 21.11 25.20 -169.99 -4.28 16.83 16 9 H -0.27 -6.17 6.64 56.52 0.38 -5.79 16 10 H -0.26 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.52 13.31 7.61 -12.18 -0.09 13.22 16 13 O -0.56 -15.45 15.87 5.32 0.08 -15.36 16 14 C 0.01 0.26 6.71 -82.84 -0.56 -0.30 16 15 N -0.35 -6.76 7.77 33.28 0.26 -6.50 16 16 O 0.10 1.69 11.18 19.13 0.21 1.90 16 17 C -0.05 -0.79 7.38 -35.39 -0.26 -1.05 16 18 C -0.16 -2.74 6.04 -104.90 -0.63 -3.37 16 19 C -0.04 -0.55 5.00 -27.91 -0.14 -0.69 16 20 C -0.10 -1.00 2.71 -90.28 -0.24 -1.25 16 21 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 22 C -0.15 -1.29 9.16 37.16 0.34 -0.95 16 23 C -0.11 -0.98 5.18 -26.45 -0.14 -1.12 16 24 C -0.03 -0.28 6.31 -27.71 -0.17 -0.45 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.99 7.39 -51.93 -0.38 0.61 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.66 3.51 -51.93 -0.18 1.48 16 29 H 0.08 1.82 5.30 -51.93 -0.28 1.55 16 30 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 32 H 0.09 1.54 7.76 -51.93 -0.40 1.13 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 37 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 311.41 15.07 4.69 4.69 Total: -1.00 -31.99 311.41 -5.76 -37.75 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.46 Total: 0.08 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.79 Total: -4.32 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.78 Total: -41.57 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.30 Total: -13.46 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.28 Total: 16.83 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.99 -5.76 -37.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334837381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.806 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds