Wall clock time and date at job start Tue Mar 31 2020 00:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47039 * 2 1 4 4 C 1.36782 * 120.00178 * 265.01690 * 3 2 1 5 5 H 1.07997 * 119.99953 * 144.55346 * 4 3 2 6 6 C 1.39116 * 119.99558 * 324.54770 * 4 3 2 7 7 N 1.31321 * 119.99455 * 154.28842 * 6 4 3 8 8 Si 1.86792 * 120.00485 * 334.28844 * 6 4 3 9 9 H 1.48491 * 109.47339 * 95.57034 * 8 6 4 10 10 H 1.48503 * 109.46898 * 335.57187 * 8 6 4 11 11 H 1.48498 * 109.47221 * 215.57702 * 8 6 4 12 12 C 1.34778 * 119.99807 * 85.01765 * 3 2 1 13 13 O 1.21550 * 119.99957 * 183.06761 * 12 3 2 14 14 C 1.48169 * 120.00270 * 3.06394 * 12 3 2 15 15 N 1.31581 * 127.15931 * 354.79629 * 14 12 3 16 16 O 1.21430 * 111.49842 * 179.78578 * 15 14 12 17 17 C 1.33213 * 111.59138 * 0.44927 * 16 15 14 18 18 C 1.35343 * 106.65125 * 359.78131 * 17 16 15 19 19 C 1.50067 * 124.94427 * 179.81062 * 18 17 16 20 20 C 1.53544 * 108.23241 * 343.95175 * 19 18 17 21 21 H 1.08995 * 109.47135 * 289.17500 * 20 19 18 22 22 C 1.53004 * 109.46307 * 169.19291 * 20 19 18 23 23 C 1.53107 * 109.50231 * 49.18855 * 20 19 18 24 24 C 1.50600 * 129.58886 * 179.91660 * 17 16 15 25 25 H 1.08999 * 109.47592 * 185.34328 * 1 2 3 26 26 H 1.09006 * 109.47411 * 305.34705 * 1 2 3 27 27 H 1.09003 * 109.47026 * 65.34357 * 1 2 3 28 28 H 1.08997 * 109.47235 * 240.00371 * 2 1 3 29 29 H 1.08996 * 109.47271 * 119.99949 * 2 1 3 30 30 H 0.96999 * 119.99691 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.70573 * 103.64685 * 19 18 17 32 32 H 1.09006 * 109.70589 * 224.27198 * 19 18 17 33 33 H 1.09004 * 109.46746 * 299.96978 * 22 20 19 34 34 H 1.09002 * 109.46944 * 59.96478 * 22 20 19 35 35 H 1.08999 * 109.47207 * 179.97438 * 22 20 19 36 36 H 1.08999 * 109.43080 * 170.06776 * 23 20 19 37 37 H 1.08994 * 109.38855 * 50.19628 * 23 20 19 38 38 H 1.08998 * 109.69624 * 282.89595 * 24 17 16 39 39 H 1.09003 * 109.69577 * 43.48148 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3432 1.9918 -1.1801 5 1 2.1508 3.0460 -1.3135 6 6 2.9218 1.2546 -2.2083 7 7 2.7815 1.6439 -3.4546 8 14 3.8980 -0.2889 -1.8162 9 1 3.0193 -1.4782 -1.9521 10 1 4.4120 -0.2095 -0.4253 11 1 5.0389 -0.4060 -2.7595 12 6 2.1473 2.0503 1.1628 13 8 2.4990 3.2138 1.1587 14 6 1.8603 1.3677 2.4462 15 7 1.3833 0.1525 2.6108 16 8 1.2617 -0.1223 3.7873 17 6 1.6375 0.8893 4.5684 18 6 2.0358 1.8874 3.7455 19 6 2.5388 3.2264 4.1993 20 6 2.1484 3.4121 5.6727 21 1 1.0711 3.5596 5.7473 22 6 2.8710 4.6350 6.2413 23 6 2.5492 2.1670 6.4685 24 6 1.6521 0.9875 6.0711 25 1 -0.3634 -1.0232 0.0957 26 1 -0.3634 0.5946 0.8383 27 1 -0.3633 0.4287 -0.9340 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.1851 1.1302 -4.1715 31 1 3.6235 3.2650 4.0985 32 1 2.0847 4.0131 3.5968 33 1 3.9485 4.4874 6.1670 34 1 2.5859 5.5215 5.6747 35 1 2.5937 4.7673 7.2871 36 1 2.4358 2.3657 7.5342 37 1 3.5890 1.9200 6.2544 38 1 0.6397 1.1560 6.4381 39 1 2.0485 0.0651 6.4956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334837381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:33 Heat of formation + Delta-G solvation = 10.787037 kcal Electronic energy + Delta-G solvation = -22551.622916 eV Core-core repulsion = 19269.046425 eV Total energy + Delta-G solvation = -3282.576492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -46.07980 -40.69849 -39.07607 -37.24810 -35.07295 -34.25872 -33.33319 -31.57166 -31.20758 -28.38597 -27.55749 -25.07074 -24.54267 -24.22015 -22.91264 -21.18707 -20.22620 -19.09746 -18.73123 -18.27217 -17.75910 -17.44009 -16.09522 -15.99544 -15.76487 -15.18889 -15.15267 -14.83085 -14.60149 -14.38954 -14.23270 -14.09651 -13.92594 -13.67252 -13.22898 -13.02812 -12.86082 -12.72554 -12.59581 -12.29943 -12.00261 -11.84740 -11.71416 -11.52336 -11.43050 -11.22707 -11.09010 -10.75896 -10.06265 -9.91755 -8.69723 -6.24653 0.15557 0.72077 1.09962 1.22384 1.32764 1.99277 2.04503 2.15718 2.37288 2.77230 3.07019 3.57839 3.65018 3.87975 3.94005 4.03715 4.08655 4.24079 4.27441 4.32227 4.46487 4.52444 4.58691 4.75581 4.79778 4.82336 4.87696 4.92513 5.00202 5.04852 5.16025 5.20162 5.24819 5.36724 5.37536 5.42509 5.53968 5.88299 6.34125 6.70126 7.05115 7.13288 7.62493 8.46538 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025577 B = 0.005650 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.457277 B = 4954.316201 C = 5467.980924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.076 3.924 3 N -0.447 5.447 4 C -0.345 4.345 5 H 0.056 0.944 6 C 0.031 3.969 7 N -0.883 5.883 8 Si 0.935 3.065 9 H -0.238 1.238 10 H -0.274 1.274 11 H -0.271 1.271 12 C 0.517 3.483 13 O -0.595 6.595 14 C -0.027 4.027 15 N -0.353 5.353 16 O 0.128 5.872 17 C -0.022 4.022 18 C -0.181 4.181 19 C -0.037 4.037 20 C -0.089 4.089 21 H 0.079 0.921 22 C -0.143 4.143 23 C -0.109 4.109 24 C -0.029 4.029 25 H 0.094 0.906 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.287 0.713 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.120 0.880 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 -5.601 23.014 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 N -0.168 5.168 4 C -0.473 4.473 5 H 0.074 0.926 6 C -0.175 4.175 7 N -0.519 5.519 8 Si 0.758 3.242 9 H -0.163 1.163 10 H -0.199 1.199 11 H -0.197 1.197 12 C 0.305 3.695 13 O -0.478 6.478 14 C -0.183 4.183 15 N -0.058 5.058 16 O 0.057 5.943 17 C -0.086 4.086 18 C -0.187 4.187 19 C -0.075 4.075 20 C -0.107 4.107 21 H 0.097 0.903 22 C -0.201 4.201 23 C -0.147 4.147 24 C -0.067 4.067 25 H 0.113 0.887 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.084 0.916 38 H 0.138 0.862 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.371 -5.992 21.850 22.781 hybrid contribution 0.763 0.608 -0.962 1.370 sum -1.608 -5.384 20.889 21.631 Atomic orbital electron populations 1.21867 0.93859 1.03015 1.00874 1.22250 0.96954 0.82881 1.02522 1.43746 1.55151 1.13217 1.04640 1.18672 1.43136 0.95976 0.89471 0.92623 1.25991 0.96027 1.01624 0.93826 1.69820 1.40153 1.42104 0.99816 0.86037 0.79586 0.79794 0.78780 1.16262 1.19893 1.19672 1.17497 0.82739 0.86938 0.82281 1.90583 1.52901 1.17654 1.86693 1.23150 1.05490 0.93049 0.96607 1.74669 1.18659 1.15654 0.96779 1.84630 1.61141 1.37351 1.11228 1.24906 0.99725 0.85750 0.98260 1.20925 1.07258 1.00920 0.89562 1.20034 1.00042 0.89982 0.97416 1.21306 1.01173 0.96932 0.91286 0.90275 1.21794 1.00360 0.96203 1.01694 1.21763 0.99286 0.91864 1.01737 1.20602 1.04017 1.02033 0.80016 0.88734 0.93790 0.93679 0.91549 0.88526 0.90292 0.91434 0.92640 0.92580 0.93564 0.89868 0.86434 0.91603 0.86202 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 9.72 71.98 0.70 -4.75 16 2 C 0.08 3.46 4.38 86.38 0.38 3.84 16 3 N -0.45 -24.51 2.20 -638.50 -1.41 -25.92 16 4 C -0.34 -21.39 9.38 84.13 0.79 -20.61 16 5 H 0.06 3.95 7.83 -2.91 -0.02 3.93 16 6 C 0.03 1.80 5.22 84.98 0.44 2.25 16 7 N -0.88 -52.59 13.95 21.69 0.30 -52.29 16 8 Si 0.94 43.90 25.20 68.60 1.73 45.62 16 9 H -0.24 -9.88 6.64 99.48 0.66 -9.22 16 10 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 C 0.52 27.97 7.61 86.88 0.66 28.63 16 13 O -0.59 -35.88 15.87 -3.87 -0.06 -35.94 16 14 C -0.03 -1.18 6.71 42.51 0.29 -0.89 16 15 N -0.35 -13.27 7.77 -48.95 -0.38 -13.65 16 16 O 0.13 3.79 11.18 78.49 0.88 4.66 16 17 C -0.02 -0.55 7.38 24.99 0.18 -0.36 16 18 C -0.18 -6.23 6.04 -20.05 -0.12 -6.35 16 19 C -0.04 -1.14 5.00 29.83 0.15 -0.99 16 20 C -0.09 -1.65 2.71 -10.57 -0.03 -1.68 16 21 H 0.08 1.41 8.12 -2.39 -0.02 1.40 16 22 C -0.14 -2.25 9.16 71.98 0.66 -1.59 16 23 C -0.11 -1.35 5.18 30.77 0.16 -1.19 16 24 C -0.03 -0.37 6.31 29.96 0.19 -0.18 16 25 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 26 H 0.04 1.76 7.39 -2.38 -0.02 1.74 16 27 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 28 H 0.07 3.04 3.51 -2.39 -0.01 3.03 16 29 H 0.10 4.12 5.30 -2.39 -0.01 4.11 16 30 H 0.29 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 32 H 0.05 2.05 7.76 -2.38 -0.02 2.03 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.12 0.67 8.11 -2.39 -0.02 0.65 16 37 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 38 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -77.32 311.41 6.52 -70.80 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.01 Total: 10.59 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 4.45 Total: -3.87 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -1.48 Total: -91.87 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: 0.82 Total: -31.28 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.73 Total: 45.62 kcal Total: -77.32 6.52 -70.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334837381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.588 kcal (2) G-P(sol) polarization free energy of solvation -77.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds