Wall clock time and date at job start Tue Mar 31 2020 00:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47012 * 2 1 4 4 C 1.36783 * 120.00432 * 96.48701 * 3 2 1 5 5 H 1.07996 * 120.00332 * 173.18407 * 4 3 2 6 6 C 1.39108 * 119.99520 * 353.18409 * 4 3 2 7 7 N 1.31314 * 120.00544 * 330.80114 * 6 4 3 8 8 Si 1.86804 * 119.99700 * 150.80300 * 6 4 3 9 9 H 1.48496 * 109.47323 * 94.98470 * 8 6 4 10 10 H 1.48505 * 109.47249 * 214.98105 * 8 6 4 11 11 H 1.48494 * 109.47222 * 334.97786 * 8 6 4 12 12 C 1.34775 * 119.99743 * 276.48060 * 3 2 1 13 13 O 1.21554 * 120.00254 * 185.28832 * 12 3 2 14 14 C 1.48165 * 120.00321 * 5.29300 * 12 3 2 15 15 N 1.31588 * 127.16401 * 5.91977 * 14 12 3 16 16 O 1.21424 * 111.50243 * 180.02562 * 15 14 12 17 17 C 1.33204 * 111.59242 * 0.05013 * 16 15 14 18 18 C 1.35339 * 106.65263 * 359.90645 * 17 16 15 19 19 C 1.50066 * 124.94565 * 180.21922 * 18 17 16 20 20 C 1.53452 * 108.20324 * 16.09796 * 19 18 17 21 21 H 1.09003 * 109.47831 * 70.82831 * 20 19 18 22 22 C 1.53006 * 109.38851 * 190.77110 * 20 19 18 23 23 C 1.53101 * 109.56477 * 310.76976 * 20 19 18 24 24 C 1.50605 * 129.58869 * 179.88277 * 17 16 15 25 25 H 1.08992 * 109.47183 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46659 * 300.00310 * 1 2 3 27 27 H 1.08993 * 109.47378 * 60.00008 * 1 2 3 28 28 H 1.08992 * 109.46921 * 239.99785 * 2 1 3 29 29 H 1.09000 * 109.47062 * 119.99758 * 2 1 3 30 30 H 0.96999 * 120.00339 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.71409 * 135.78846 * 19 18 17 32 32 H 1.09007 * 109.71522 * 256.37852 * 19 18 17 33 33 H 1.09000 * 109.46310 * 180.02562 * 22 20 19 34 34 H 1.08996 * 109.46898 * 300.05562 * 22 20 19 35 35 H 1.08995 * 109.47351 * 60.06281 * 22 20 19 36 36 H 1.09000 * 109.43132 * 309.82178 * 23 20 19 37 37 H 1.09000 * 109.43238 * 189.92090 * 23 20 19 38 38 H 1.09000 * 109.69632 * 77.02646 * 24 17 16 39 39 H 1.09004 * 109.69492 * 316.43597 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3725 1.9815 1.1769 5 1 2.8349 2.9574 1.1677 6 6 2.1370 1.3348 2.3859 7 7 1.1316 0.4976 2.4978 8 14 3.2512 1.6575 3.8501 9 1 2.6522 2.7140 4.7046 10 1 3.4041 0.4095 4.6403 11 1 4.5829 2.1054 3.3696 12 6 2.1187 2.0604 -1.1598 13 8 2.6132 3.1707 -1.1730 14 6 1.6262 1.4538 -2.4186 15 7 0.9746 0.3184 -2.5522 16 8 0.7075 0.0927 -3.7150 17 6 1.1525 1.0589 -4.5167 18 6 1.7584 1.9728 -3.7233 19 6 2.4033 3.2384 -4.2074 20 6 1.9138 3.5098 -5.6362 21 1 0.8657 3.8081 -5.6108 22 6 2.7488 4.6331 -6.2544 23 6 2.0628 2.2403 -6.4789 24 6 1.0472 1.1887 -6.0134 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.9672 0.0470 3.3409 31 1 2.1205 4.0668 -3.5579 32 1 3.4873 3.1230 -4.2050 33 1 2.4017 4.8272 -7.2693 34 1 2.6427 5.5369 -5.6545 35 1 3.7968 4.3349 -6.2801 36 1 3.0722 1.8452 -6.3640 37 1 1.8837 2.4781 -7.5275 38 1 0.0401 1.5054 -6.2848 39 1 1.2702 0.2300 -6.4819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334837384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:38 Heat of formation + Delta-G solvation = 32.540144 kcal Electronic energy + Delta-G solvation = -22522.262991 eV Core-core repulsion = 19240.629785 eV Total energy + Delta-G solvation = -3281.633206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.38 seconds Orbital eigenvalues (eV) -44.40478 -38.46065 -37.97853 -35.10436 -33.29135 -32.24024 -31.82878 -29.94868 -29.30815 -27.00083 -25.52984 -23.67977 -22.96865 -21.99183 -21.60166 -19.67141 -18.82451 -17.23636 -16.81852 -16.52875 -15.97485 -14.91843 -14.57699 -14.30652 -14.12747 -13.78747 -13.65284 -13.23387 -13.16659 -12.65234 -12.62462 -12.51944 -12.04791 -11.93120 -11.68018 -11.32652 -11.11928 -10.93960 -10.82401 -10.71410 -10.57672 -10.43277 -10.28667 -10.21489 -9.90382 -9.31698 -8.94096 -8.65546 -8.52564 -7.85119 -6.53121 -3.81861 1.82065 2.34072 3.12551 3.20780 3.29481 3.39865 4.00944 4.22458 4.56557 4.64736 4.73217 4.79952 5.01338 5.08884 5.19444 5.25921 5.40715 5.48529 5.53276 5.66371 5.77214 5.79180 5.92107 5.95816 6.02508 6.12814 6.16098 6.35914 6.42718 6.43305 6.66106 6.71396 6.76909 6.98735 7.29584 7.38863 7.74248 7.99628 8.39178 8.74157 9.07684 9.31983 9.92334 10.46956 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028359 B = 0.005201 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.105052 B = 5382.138117 C = 6208.447711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.118 3.882 3 N -0.406 5.406 4 C -0.311 4.311 5 H 0.110 0.890 6 C 0.038 3.962 7 N -0.840 5.840 8 Si 0.918 3.082 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.266 1.266 12 C 0.490 3.510 13 O -0.586 6.586 14 C 0.017 3.983 15 N -0.340 5.340 16 O 0.099 5.901 17 C -0.062 4.062 18 C -0.160 4.160 19 C -0.034 4.034 20 C -0.096 4.096 21 H 0.073 0.927 22 C -0.145 4.145 23 C -0.112 4.112 24 C -0.029 4.029 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.272 0.728 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 -0.129 -15.089 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.005 4.005 3 N -0.122 5.122 4 C -0.439 4.439 5 H 0.128 0.872 6 C -0.169 4.169 7 N -0.477 5.477 8 Si 0.743 3.257 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.191 1.191 12 C 0.279 3.721 13 O -0.472 6.472 14 C -0.141 4.141 15 N -0.049 5.049 16 O 0.033 5.967 17 C -0.126 4.126 18 C -0.164 4.164 19 C -0.071 4.071 20 C -0.114 4.114 21 H 0.091 0.909 22 C -0.202 4.202 23 C -0.149 4.149 24 C -0.067 4.067 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.486 -0.661 -14.055 14.079 hybrid contribution 0.554 0.435 0.566 0.903 sum 0.068 -0.226 -13.490 13.492 Atomic orbital electron populations 1.21948 0.96072 0.99874 1.01624 1.21584 0.95295 0.82783 1.00830 1.43765 1.51797 1.11390 1.05263 1.19774 1.37466 1.04777 0.81867 0.87183 1.25322 0.95836 0.96642 0.99100 1.70161 1.22986 1.27764 1.26787 0.86064 0.81268 0.78025 0.80300 1.20197 1.20536 1.19063 1.16495 0.88194 0.86010 0.81450 1.90578 1.51176 1.20181 1.85236 1.23501 1.00936 0.92665 0.96962 1.74938 1.16878 1.17615 0.95508 1.84679 1.59087 1.40457 1.12433 1.23922 1.02135 0.90557 0.96021 1.20586 1.04801 0.99999 0.91037 1.19937 0.99416 0.93359 0.94424 1.21302 1.00475 0.94966 0.94680 0.90878 1.21798 0.99964 0.98238 1.00197 1.21693 0.99258 0.94584 0.99402 1.20115 1.01097 1.00685 0.84853 0.94457 0.89911 0.94814 0.93470 0.88793 0.91795 0.89265 0.90463 0.92757 0.92301 0.92535 0.91209 0.90570 0.89435 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.13 37.16 0.34 -2.88 16 2 C 0.12 2.92 4.88 -4.04 -0.02 2.90 16 3 N -0.41 -11.03 2.63 -115.78 -0.30 -11.34 16 4 C -0.31 -8.73 9.41 -15.02 -0.14 -8.88 16 5 H 0.11 3.22 7.32 -52.49 -0.38 2.84 16 6 C 0.04 0.98 4.80 -17.45 -0.08 0.89 16 7 N -0.84 -21.64 8.88 55.50 0.49 -21.15 16 8 Si 0.92 20.11 29.64 -169.99 -5.04 15.07 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 12 C 0.49 13.12 7.59 -12.18 -0.09 13.03 16 13 O -0.59 -16.78 15.63 5.32 0.08 -16.70 16 14 C 0.02 0.39 6.55 -82.84 -0.54 -0.15 16 15 N -0.34 -7.24 6.95 33.28 0.23 -7.01 16 16 O 0.10 1.79 11.18 19.16 0.21 2.00 16 17 C -0.06 -0.98 7.38 -35.39 -0.26 -1.24 16 18 C -0.16 -2.98 6.04 -104.90 -0.63 -3.62 16 19 C -0.03 -0.54 5.00 -27.96 -0.14 -0.68 16 20 C -0.10 -1.10 2.70 -90.33 -0.24 -1.34 16 21 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 22 C -0.14 -1.38 9.16 37.16 0.34 -1.04 16 23 C -0.11 -1.07 5.19 -26.46 -0.14 -1.20 16 24 C -0.03 -0.30 6.31 -27.71 -0.17 -0.48 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 2.12 6.41 -51.93 -0.33 1.79 16 27 H 0.03 0.79 6.09 -51.93 -0.32 0.47 16 28 H 0.05 1.12 6.06 -51.93 -0.31 0.80 16 29 H 0.09 2.40 5.85 -51.93 -0.30 2.10 16 30 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 31 H 0.09 1.62 7.75 -51.93 -0.40 1.22 16 32 H 0.08 1.24 8.12 -51.92 -0.42 0.82 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 37 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 309.48 15.07 4.66 4.66 Total: -1.00 -30.63 309.48 -6.86 -37.49 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.41 Total: 1.65 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.79 Total: -4.69 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.42 Total: -39.49 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.30 Total: -14.69 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.04 Total: 15.07 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.63 -6.86 -37.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334837384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.031 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.38 seconds