Wall clock time and date at job start Tue Mar 31 2020 00:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47012 * 2 1 4 4 C 1.36783 * 120.00432 * 96.48701 * 3 2 1 5 5 H 1.07996 * 120.00332 * 173.18407 * 4 3 2 6 6 C 1.39108 * 119.99520 * 353.18409 * 4 3 2 7 7 N 1.31314 * 120.00544 * 330.80114 * 6 4 3 8 8 Si 1.86804 * 119.99700 * 150.80300 * 6 4 3 9 9 H 1.48496 * 109.47323 * 94.98470 * 8 6 4 10 10 H 1.48505 * 109.47249 * 214.98105 * 8 6 4 11 11 H 1.48494 * 109.47222 * 334.97786 * 8 6 4 12 12 C 1.34775 * 119.99743 * 276.48060 * 3 2 1 13 13 O 1.21554 * 120.00254 * 185.28832 * 12 3 2 14 14 C 1.48165 * 120.00321 * 5.29300 * 12 3 2 15 15 N 1.31588 * 127.16401 * 5.91977 * 14 12 3 16 16 O 1.21424 * 111.50243 * 180.02562 * 15 14 12 17 17 C 1.33204 * 111.59242 * 0.05013 * 16 15 14 18 18 C 1.35339 * 106.65263 * 359.90645 * 17 16 15 19 19 C 1.50066 * 124.94565 * 180.21922 * 18 17 16 20 20 C 1.53452 * 108.20324 * 16.09796 * 19 18 17 21 21 H 1.09003 * 109.47831 * 70.82831 * 20 19 18 22 22 C 1.53006 * 109.38851 * 190.77110 * 20 19 18 23 23 C 1.53101 * 109.56477 * 310.76976 * 20 19 18 24 24 C 1.50605 * 129.58869 * 179.88277 * 17 16 15 25 25 H 1.08992 * 109.47183 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46659 * 300.00310 * 1 2 3 27 27 H 1.08993 * 109.47378 * 60.00008 * 1 2 3 28 28 H 1.08992 * 109.46921 * 239.99785 * 2 1 3 29 29 H 1.09000 * 109.47062 * 119.99758 * 2 1 3 30 30 H 0.96999 * 120.00339 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.71409 * 135.78846 * 19 18 17 32 32 H 1.09007 * 109.71522 * 256.37852 * 19 18 17 33 33 H 1.09000 * 109.46310 * 180.02562 * 22 20 19 34 34 H 1.08996 * 109.46898 * 300.05562 * 22 20 19 35 35 H 1.08995 * 109.47351 * 60.06281 * 22 20 19 36 36 H 1.09000 * 109.43132 * 309.82178 * 23 20 19 37 37 H 1.09000 * 109.43238 * 189.92090 * 23 20 19 38 38 H 1.09000 * 109.69632 * 77.02646 * 24 17 16 39 39 H 1.09004 * 109.69492 * 316.43597 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3725 1.9815 1.1769 5 1 2.8349 2.9574 1.1677 6 6 2.1370 1.3348 2.3859 7 7 1.1316 0.4976 2.4978 8 14 3.2512 1.6575 3.8501 9 1 2.6522 2.7140 4.7046 10 1 3.4041 0.4095 4.6403 11 1 4.5829 2.1054 3.3696 12 6 2.1187 2.0604 -1.1598 13 8 2.6132 3.1707 -1.1730 14 6 1.6262 1.4538 -2.4186 15 7 0.9746 0.3184 -2.5522 16 8 0.7075 0.0927 -3.7150 17 6 1.1525 1.0589 -4.5167 18 6 1.7584 1.9728 -3.7233 19 6 2.4033 3.2384 -4.2074 20 6 1.9138 3.5098 -5.6362 21 1 0.8657 3.8081 -5.6108 22 6 2.7488 4.6331 -6.2544 23 6 2.0628 2.2403 -6.4789 24 6 1.0472 1.1887 -6.0134 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.9672 0.0470 3.3409 31 1 2.1205 4.0668 -3.5579 32 1 3.4873 3.1230 -4.2050 33 1 2.4017 4.8272 -7.2693 34 1 2.6427 5.5369 -5.6545 35 1 3.7968 4.3349 -6.2801 36 1 3.0722 1.8452 -6.3640 37 1 1.8837 2.4781 -7.5275 38 1 0.0401 1.5054 -6.2848 39 1 1.2702 0.2300 -6.4819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334837384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:36 Heat of formation + Delta-G solvation = 14.962373 kcal Electronic energy + Delta-G solvation = -22523.025221 eV Core-core repulsion = 19240.629785 eV Total energy + Delta-G solvation = -3282.395435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.97894 -40.46619 -39.04807 -37.15758 -34.92967 -33.80810 -33.27610 -31.45459 -31.04049 -28.26167 -27.40957 -25.04706 -24.41915 -23.89157 -22.83858 -21.16634 -20.23649 -19.02797 -18.58094 -18.11727 -17.74616 -16.68636 -16.08093 -15.89958 -15.69407 -15.16760 -14.94723 -14.83465 -14.47772 -14.22308 -14.07011 -13.87136 -13.66734 -13.26789 -12.97435 -12.93573 -12.79888 -12.53594 -12.25138 -12.16118 -12.08044 -11.83272 -11.81993 -11.49740 -11.37319 -11.00601 -10.94323 -10.66083 -10.01263 -9.85849 -8.54148 -5.94988 0.27747 0.79419 1.35455 1.39849 1.53724 2.08757 2.19302 2.27745 2.75585 2.97984 3.23052 3.65550 3.71324 3.90551 4.09828 4.12372 4.28897 4.32432 4.46083 4.55633 4.63272 4.72373 4.76939 4.82409 4.84343 4.94906 5.00363 5.05659 5.06481 5.17117 5.26237 5.29619 5.32153 5.39962 5.43473 5.54466 5.72941 5.90537 6.34908 6.97872 7.20228 7.29866 7.86699 8.46112 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028359 B = 0.005201 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.105052 B = 5382.138117 C = 6208.447711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.126 3.874 3 N -0.419 5.419 4 C -0.362 4.362 5 H 0.082 0.918 6 C 0.013 3.987 7 N -0.850 5.850 8 Si 0.988 3.012 9 H -0.269 1.269 10 H -0.261 1.261 11 H -0.274 1.274 12 C 0.476 3.524 13 O -0.622 6.622 14 C -0.022 4.022 15 N -0.355 5.355 16 O 0.118 5.882 17 C -0.031 4.031 18 C -0.184 4.184 19 C -0.033 4.033 20 C -0.089 4.089 21 H 0.076 0.924 22 C -0.142 4.142 23 C -0.107 4.107 24 C -0.029 4.029 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.028 0.972 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.282 0.718 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 -1.417 -17.572 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.003 3.997 3 N -0.135 5.135 4 C -0.490 4.490 5 H 0.100 0.900 6 C -0.193 4.193 7 N -0.485 5.485 8 Si 0.810 3.190 9 H -0.194 1.194 10 H -0.185 1.185 11 H -0.199 1.199 12 C 0.265 3.735 13 O -0.511 6.511 14 C -0.178 4.178 15 N -0.060 5.060 16 O 0.048 5.952 17 C -0.095 4.095 18 C -0.190 4.190 19 C -0.070 4.070 20 C -0.108 4.108 21 H 0.094 0.906 22 C -0.199 4.199 23 C -0.145 4.145 24 C -0.066 4.066 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.096 -1.972 -16.495 16.648 hybrid contribution 0.670 0.804 1.242 1.624 sum -0.426 -1.169 -15.253 15.304 Atomic orbital electron populations 1.21766 0.95097 1.00918 1.00110 1.21549 0.95947 0.81679 1.00483 1.43960 1.52074 1.12174 1.05279 1.19695 1.40615 1.05189 0.83473 0.90016 1.26103 0.96326 0.95984 1.00926 1.70189 1.22888 1.27406 1.28018 0.85045 0.78546 0.78680 0.76725 1.19434 1.18483 1.19921 1.17089 0.87725 0.85922 0.82733 1.90515 1.52587 1.21754 1.86233 1.23202 1.03303 0.94383 0.96900 1.74860 1.16823 1.17116 0.97206 1.84631 1.58049 1.40723 1.11778 1.24912 0.98613 0.87958 0.98063 1.20930 1.06355 1.01824 0.89870 1.19970 0.98786 0.91117 0.97167 1.21294 1.00646 0.97088 0.91749 0.90581 1.21785 0.99838 0.96960 1.01335 1.21749 0.98947 0.92774 1.00998 1.20575 1.03040 1.02822 0.80186 0.91983 0.92290 0.95277 0.92710 0.89919 0.90761 0.92871 0.91447 0.89868 0.93540 0.92453 0.91525 0.86415 0.86559 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 9.13 71.98 0.66 -5.09 16 2 C 0.13 6.42 4.88 86.38 0.42 6.84 16 3 N -0.42 -24.06 2.63 -638.50 -1.68 -25.74 16 4 C -0.36 -21.56 9.41 84.13 0.79 -20.77 16 5 H 0.08 5.19 7.32 -2.91 -0.02 5.17 16 6 C 0.01 0.69 4.80 84.98 0.41 1.10 16 7 N -0.85 -44.24 8.88 21.69 0.19 -44.05 16 8 Si 0.99 41.94 29.64 68.60 2.03 43.97 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 C 0.48 27.16 7.59 86.88 0.66 27.82 16 13 O -0.62 -38.58 15.63 -3.89 -0.06 -38.64 16 14 C -0.02 -1.04 6.55 42.50 0.28 -0.76 16 15 N -0.35 -15.12 6.95 -48.94 -0.34 -15.46 16 16 O 0.12 4.07 11.18 78.58 0.88 4.94 16 17 C -0.03 -0.90 7.38 24.99 0.18 -0.71 16 18 C -0.18 -6.96 6.04 -20.05 -0.12 -7.08 16 19 C -0.03 -1.08 5.00 29.80 0.15 -0.93 16 20 C -0.09 -1.85 2.70 -10.61 -0.03 -1.88 16 21 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 22 C -0.14 -2.41 9.16 71.98 0.66 -1.75 16 23 C -0.11 -1.55 5.19 30.77 0.16 -1.39 16 24 C -0.03 -0.45 6.31 29.96 0.19 -0.26 16 25 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.06 3.08 6.41 -2.38 -0.02 3.07 16 27 H 0.03 1.38 6.09 -2.39 -0.01 1.36 16 28 H 0.05 2.66 6.06 -2.39 -0.01 2.65 16 29 H 0.08 4.34 5.85 -2.39 -0.01 4.32 16 30 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 31 H 0.05 2.10 7.75 -2.39 -0.02 2.08 16 32 H 0.07 2.28 8.12 -2.38 -0.02 2.27 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 37 H 0.12 0.88 8.11 -2.39 -0.02 0.86 16 38 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -72.64 309.48 6.49 -66.15 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.06 Total: 13.69 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 4.41 Total: -4.87 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -1.83 Total: -85.25 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: 0.82 Total: -33.70 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -72.64 6.49 -66.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334837384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.115 kcal (2) G-P(sol) polarization free energy of solvation -72.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds