Wall clock time and date at job start Tue Mar 31 2020 00:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46952 * 2 1 4 4 C 1.46500 * 119.99467 * 269.99299 * 3 2 1 5 5 C 1.50703 * 109.47337 * 270.00248 * 4 3 2 6 6 O 1.21292 * 119.99799 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99898 * 180.02562 * 5 4 3 8 8 C 1.37102 * 119.99908 * 180.02562 * 7 5 4 9 9 H 1.08000 * 120.00012 * 359.97438 * 8 7 5 10 10 C 1.38956 * 120.00043 * 180.02562 * 8 7 5 11 11 N 1.31410 * 119.99934 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99724 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47163 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47087 * 119.99960 * 12 10 8 15 15 H 1.48508 * 109.46649 * 239.99527 * 12 10 8 16 16 C 1.39664 * 120.00132 * 90.00186 * 3 2 1 17 17 C 1.38970 * 120.04955 * 359.97082 * 16 3 2 18 18 C 1.38105 * 120.03860 * 180.02562 * 17 16 3 19 19 C 1.38226 * 120.12633 * 359.74694 * 18 17 16 20 20 C 1.38763 * 120.09039 * 0.50784 * 19 18 17 21 21 O 1.35905 * 120.01951 * 179.76750 * 20 19 18 22 22 C 1.42901 * 116.99604 * 359.72480 * 21 20 19 23 23 C 1.38618 * 119.96644 * 359.49430 * 20 19 18 24 24 H 1.08997 * 109.47336 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47034 * 300.00639 * 1 2 3 26 26 H 1.09008 * 109.46773 * 60.00180 * 1 2 3 27 27 H 1.08996 * 109.47177 * 239.99076 * 2 1 3 28 28 H 1.09003 * 109.46338 * 119.99659 * 2 1 3 29 29 H 1.09000 * 109.47146 * 30.00847 * 4 3 2 30 30 H 1.08997 * 109.46836 * 150.00310 * 4 3 2 31 31 H 0.97001 * 120.00751 * 0.02562 * 7 5 4 32 32 H 0.97001 * 120.00181 * 180.02562 * 11 10 8 33 33 H 1.08008 * 119.98021 * 0.02562 * 17 16 3 34 34 H 1.08001 * 119.93903 * 179.97438 * 18 17 16 35 35 H 1.08003 * 119.94954 * 180.27654 * 19 18 17 36 36 H 1.08995 * 109.47253 * 179.97438 * 22 21 20 37 37 H 1.08998 * 109.47043 * 300.00197 * 22 21 20 38 38 H 1.08999 * 109.47144 * 59.99795 * 22 21 20 39 39 H 1.07998 * 120.06229 * 180.23539 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 8 4.4235 1.1557 -1.0213 7 7 4.1391 2.3777 -2.8511 8 6 5.4338 2.1618 -3.2470 9 1 6.0906 1.5571 -2.6394 10 6 5.9012 2.7220 -4.4297 11 7 5.1022 3.4582 -5.1688 12 14 7.6655 2.4283 -4.9687 13 1 8.3527 1.5723 -3.9686 14 1 7.6730 1.7504 -6.2900 15 1 8.3733 3.7295 -5.0759 16 6 2.2511 2.0397 1.2095 17 6 2.0193 1.3857 2.4136 18 6 2.2491 2.0372 3.6095 19 6 2.7149 3.3386 3.6123 20 6 2.9431 3.9984 2.4131 21 8 3.3965 5.2796 2.4175 22 6 3.6108 5.8874 3.6929 23 6 2.7137 3.3482 1.2105 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.5817 1.6876 -2.0284 30 1 2.0956 3.1409 -1.1386 31 1 3.5493 2.9212 -3.3967 32 1 5.4283 3.8489 -5.9946 33 1 1.6593 0.3674 2.4142 34 1 2.0680 1.5276 4.5444 35 1 2.8978 3.8438 4.5492 36 1 3.9720 6.9063 3.5537 37 1 2.6732 5.9066 4.2483 38 1 4.3511 5.3128 4.2495 39 1 2.8944 3.8590 0.2763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343036736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:32 Heat of formation + Delta-G solvation = -37.167195 kcal Electronic energy + Delta-G solvation = -21605.928237 eV Core-core repulsion = 18321.272294 eV Total energy + Delta-G solvation = -3284.655943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.99537 -38.67901 -37.47541 -35.46846 -33.85301 -31.68037 -31.19974 -29.89436 -29.45537 -27.09737 -26.50833 -24.46834 -22.92080 -21.98254 -20.50210 -19.16802 -18.09092 -17.70211 -16.19354 -16.09982 -15.95583 -15.53987 -15.34414 -14.78907 -14.54711 -13.97441 -13.79375 -13.42255 -13.41101 -13.12182 -12.96677 -12.34882 -12.21327 -12.04700 -11.94745 -11.54627 -11.49410 -11.17340 -11.06527 -10.98134 -10.86218 -10.45584 -10.33596 -10.21787 -9.66335 -9.50868 -8.42236 -8.01571 -7.96022 -6.95227 -6.40476 -3.81578 1.78639 1.91471 3.16820 3.19980 3.27725 3.35368 3.63918 3.88917 4.16171 4.21789 5.00145 5.04312 5.10751 5.15864 5.20131 5.24906 5.33058 5.39006 5.43782 5.50872 5.55845 5.65079 5.74419 5.79967 5.89157 5.90154 5.94874 6.18175 6.28093 6.31832 6.58835 6.61205 6.76142 6.86881 7.53445 7.56237 7.66003 7.84331 8.07018 8.61803 9.18929 9.54265 10.05640 10.76596 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.005005 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.195250 B = 5593.002957 C = 6817.418756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.124 3.876 3 N -0.595 5.595 4 C 0.108 3.892 5 C 0.419 3.581 6 O -0.581 6.581 7 N -0.562 5.562 8 C -0.298 4.298 9 H 0.102 0.898 10 C 0.023 3.977 11 N -0.901 5.901 12 Si 0.928 3.072 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.273 3.727 17 C -0.233 4.233 18 C -0.040 4.040 19 C -0.275 4.275 20 C 0.170 3.830 21 O -0.318 6.318 22 C 0.031 3.969 23 C -0.226 4.226 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.392 0.608 32 H 0.271 0.729 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.764 0.079 13.340 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.302 5.302 4 C -0.019 4.019 5 C 0.204 3.796 6 O -0.465 6.465 7 N -0.199 5.199 8 C -0.427 4.427 9 H 0.120 0.880 10 C -0.179 4.179 11 N -0.542 5.542 12 Si 0.755 3.245 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.207 1.207 16 C 0.168 3.832 17 C -0.256 4.256 18 C -0.059 4.059 19 C -0.296 4.296 20 C 0.124 3.876 21 O -0.231 6.231 22 C -0.064 4.064 23 C -0.249 4.249 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.225 0.775 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.214 -0.265 13.272 16.159 hybrid contribution 0.655 0.256 -0.516 0.872 sum -8.559 -0.009 12.756 15.362 Atomic orbital electron populations 1.22251 0.96645 1.01645 1.02370 1.21340 0.93075 0.82373 1.03168 1.46078 1.69054 1.12935 1.02102 1.21265 0.96195 0.98511 0.85959 1.20530 0.89716 0.85689 0.83708 1.90535 1.58042 1.42831 1.55102 1.41902 1.12783 1.45468 1.19785 1.19739 0.87874 1.29848 1.05265 0.87995 1.25251 1.00010 0.96456 0.96153 1.69616 1.36220 1.33587 1.14804 0.85818 0.81988 0.78162 0.78489 1.19273 1.20751 1.20713 1.17375 0.89992 0.89985 0.85816 1.20513 1.13276 1.00873 0.90910 1.20527 0.94907 0.93398 0.97020 1.20834 1.14672 0.97777 0.96290 1.18618 0.92323 0.83078 0.93612 1.86075 1.80695 1.25085 1.31281 1.22977 1.00708 0.98166 0.84567 1.19788 1.13399 0.94828 0.96859 0.91988 0.92394 0.92497 0.90621 0.90727 0.89226 0.89072 0.77467 0.91917 0.86156 0.86423 0.86412 0.88671 0.92927 0.92827 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.24 37.16 0.38 -1.50 16 2 C 0.12 1.75 5.88 -4.04 -0.02 1.73 16 3 N -0.59 -10.09 2.09 -173.14 -0.36 -10.45 16 4 C 0.11 1.93 5.64 -5.19 -0.03 1.90 16 5 C 0.42 9.95 7.85 -10.99 -0.09 9.86 16 6 O -0.58 -16.08 16.01 5.55 0.09 -15.99 16 7 N -0.56 -14.31 5.29 -10.96 -0.06 -14.36 16 8 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 9 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 10 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 11 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 12 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 C 0.27 4.75 6.55 -83.81 -0.55 4.20 16 17 C -0.23 -3.53 9.20 -39.36 -0.36 -3.89 16 18 C -0.04 -0.54 10.03 -39.63 -0.40 -0.94 16 19 C -0.27 -3.95 9.04 -39.39 -0.36 -4.30 16 20 C 0.17 2.84 6.68 -39.25 -0.26 2.58 16 21 O -0.32 -5.05 10.49 -19.44 -0.20 -5.26 16 22 C 0.03 0.33 9.81 101.05 0.99 1.32 16 23 C -0.23 -4.14 9.14 -39.24 -0.36 -4.50 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.08 1.13 8.07 -51.93 -0.42 0.71 16 28 H 0.07 1.01 6.19 -51.93 -0.32 0.69 16 29 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.09 1.52 6.19 -51.93 -0.32 1.20 16 31 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.12 1.59 6.14 -52.48 -0.32 1.27 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.38 6.29 -52.48 -0.33 1.05 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.47 7.67 -51.93 -0.40 0.08 16 38 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 39 H 0.13 2.47 6.14 -52.49 -0.32 2.15 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -33.10 329.46 -6.36 -39.46 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.20 Total: 10.79 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.29 Total: -1.55 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.30 Total: -48.70 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.12 Total: -21.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.10 -6.36 -39.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343036736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.294 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds