Wall clock time and date at job start Tue Mar 31 2020 00:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46952 * 2 1 4 4 C 1.46500 * 119.99467 * 269.99299 * 3 2 1 5 5 C 1.50703 * 109.47337 * 270.00248 * 4 3 2 6 6 O 1.21292 * 119.99799 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99898 * 180.02562 * 5 4 3 8 8 C 1.37102 * 119.99908 * 180.02562 * 7 5 4 9 9 H 1.08000 * 120.00012 * 359.97438 * 8 7 5 10 10 C 1.38956 * 120.00043 * 180.02562 * 8 7 5 11 11 N 1.31410 * 119.99934 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99724 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47163 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47087 * 119.99960 * 12 10 8 15 15 H 1.48508 * 109.46649 * 239.99527 * 12 10 8 16 16 C 1.39664 * 120.00132 * 90.00186 * 3 2 1 17 17 C 1.38970 * 120.04955 * 359.97082 * 16 3 2 18 18 C 1.38105 * 120.03860 * 180.02562 * 17 16 3 19 19 C 1.38226 * 120.12633 * 359.74694 * 18 17 16 20 20 C 1.38763 * 120.09039 * 0.50784 * 19 18 17 21 21 O 1.35905 * 120.01951 * 179.76750 * 20 19 18 22 22 C 1.42901 * 116.99604 * 359.72480 * 21 20 19 23 23 C 1.38618 * 119.96644 * 359.49430 * 20 19 18 24 24 H 1.08997 * 109.47336 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47034 * 300.00639 * 1 2 3 26 26 H 1.09008 * 109.46773 * 60.00180 * 1 2 3 27 27 H 1.08996 * 109.47177 * 239.99076 * 2 1 3 28 28 H 1.09003 * 109.46338 * 119.99659 * 2 1 3 29 29 H 1.09000 * 109.47146 * 30.00847 * 4 3 2 30 30 H 1.08997 * 109.46836 * 150.00310 * 4 3 2 31 31 H 0.97001 * 120.00751 * 0.02562 * 7 5 4 32 32 H 0.97001 * 120.00181 * 180.02562 * 11 10 8 33 33 H 1.08008 * 119.98021 * 0.02562 * 17 16 3 34 34 H 1.08001 * 119.93903 * 179.97438 * 18 17 16 35 35 H 1.08003 * 119.94954 * 180.27654 * 19 18 17 36 36 H 1.08995 * 109.47253 * 179.97438 * 22 21 20 37 37 H 1.08998 * 109.47043 * 300.00197 * 22 21 20 38 38 H 1.08999 * 109.47144 * 59.99795 * 22 21 20 39 39 H 1.07998 * 120.06229 * 180.23539 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 8 4.4235 1.1557 -1.0213 7 7 4.1391 2.3777 -2.8511 8 6 5.4338 2.1618 -3.2470 9 1 6.0906 1.5571 -2.6394 10 6 5.9012 2.7220 -4.4297 11 7 5.1022 3.4582 -5.1688 12 14 7.6655 2.4283 -4.9687 13 1 8.3527 1.5723 -3.9686 14 1 7.6730 1.7504 -6.2900 15 1 8.3733 3.7295 -5.0759 16 6 2.2511 2.0397 1.2095 17 6 2.0193 1.3857 2.4136 18 6 2.2491 2.0372 3.6095 19 6 2.7149 3.3386 3.6123 20 6 2.9431 3.9984 2.4131 21 8 3.3965 5.2796 2.4175 22 6 3.6108 5.8874 3.6929 23 6 2.7137 3.3482 1.2105 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.5817 1.6876 -2.0284 30 1 2.0956 3.1409 -1.1386 31 1 3.5493 2.9212 -3.3967 32 1 5.4283 3.8489 -5.9946 33 1 1.6593 0.3674 2.4142 34 1 2.0680 1.5276 4.5444 35 1 2.8978 3.8438 4.5492 36 1 3.9720 6.9063 3.5537 37 1 2.6732 5.9066 4.2483 38 1 4.3511 5.3128 4.2495 39 1 2.8944 3.8590 0.2763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343036736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:31 Heat of formation + Delta-G solvation = -58.859450 kcal Electronic energy + Delta-G solvation = -21606.868884 eV Core-core repulsion = 18321.272294 eV Total energy + Delta-G solvation = -3285.596590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21921 -40.24246 -38.95802 -36.72027 -35.88129 -33.34990 -32.73191 -30.99251 -30.81767 -28.19229 -27.83588 -26.29638 -24.02799 -23.22007 -21.85661 -20.83807 -19.94369 -19.09298 -17.90450 -17.33481 -17.21039 -16.67763 -16.57449 -16.42148 -16.08235 -15.56646 -15.49407 -14.87257 -14.50847 -14.44574 -14.19701 -13.80928 -13.54685 -13.33044 -13.07091 -13.01609 -12.87351 -12.74406 -12.44196 -12.21694 -12.14791 -12.08770 -11.89010 -11.59705 -11.53670 -10.95181 -10.27005 -10.03603 -9.23072 -8.50652 -8.20232 -5.97737 0.59091 0.71664 1.33836 1.39045 1.53224 2.00622 2.01037 2.29290 2.54832 2.96393 3.17172 3.30092 3.94289 3.99662 4.16796 4.23072 4.33077 4.34460 4.40026 4.42759 4.43374 4.49754 4.59252 4.66773 4.68942 4.73920 4.84284 4.97682 5.08140 5.34539 5.38185 5.41439 5.45345 5.63202 5.75722 5.94472 6.29016 6.51958 6.58072 6.63680 7.10431 7.52851 8.08419 8.68545 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.005005 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.195250 B = 5593.002957 C = 6817.418756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.118 3.882 3 N -0.602 5.602 4 C 0.121 3.879 5 C 0.419 3.581 6 O -0.624 6.624 7 N -0.571 5.571 8 C -0.333 4.333 9 H 0.074 0.926 10 C -0.011 4.011 11 N -0.918 5.918 12 Si 0.992 3.008 13 H -0.276 1.276 14 H -0.267 1.267 15 H -0.271 1.271 16 C 0.252 3.748 17 C -0.239 4.239 18 C -0.033 4.033 19 C -0.272 4.272 20 C 0.156 3.844 21 O -0.346 6.346 22 C 0.021 3.979 23 C -0.262 4.262 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.397 0.603 32 H 0.278 0.722 33 H 0.140 0.860 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.579 -0.162 14.772 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.004 4.004 3 N -0.310 5.310 4 C -0.007 4.007 5 C 0.205 3.795 6 O -0.511 6.511 7 N -0.209 5.209 8 C -0.463 4.463 9 H 0.092 0.908 10 C -0.211 4.211 11 N -0.559 5.559 12 Si 0.815 3.185 13 H -0.201 1.201 14 H -0.192 1.192 15 H -0.196 1.196 16 C 0.149 3.851 17 C -0.261 4.261 18 C -0.052 4.052 19 C -0.293 4.293 20 C 0.110 3.890 21 O -0.260 6.260 22 C -0.073 4.073 23 C -0.285 4.285 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.137 0.863 30 H 0.119 0.881 31 H 0.231 0.769 32 H 0.088 0.912 33 H 0.157 0.843 34 H 0.175 0.825 35 H 0.166 0.834 36 H 0.132 0.868 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.063 -0.492 14.712 17.831 hybrid contribution 0.916 0.373 -0.852 1.305 sum -9.147 -0.119 13.860 16.606 Atomic orbital electron populations 1.22134 0.93837 1.03144 1.02434 1.21522 0.95247 0.80900 1.02708 1.46245 1.69321 1.13870 1.01521 1.21148 0.92414 0.99669 0.87476 1.21634 0.91755 0.83730 0.82333 1.90491 1.60010 1.44448 1.56117 1.41965 1.12223 1.46053 1.20633 1.19649 0.89106 1.31306 1.06195 0.90762 1.26017 1.03846 0.95672 0.95538 1.69671 1.37703 1.33496 1.15058 0.84898 0.77119 0.78307 0.78154 1.20081 1.19231 1.19586 1.17661 0.90690 0.89971 0.86799 1.20827 1.12990 1.01737 0.90530 1.21019 0.93005 0.93108 0.98064 1.21201 1.13476 0.98109 0.96465 1.18832 0.92531 0.83679 0.93994 1.86036 1.80650 1.24944 1.34391 1.23317 1.02082 0.98896 0.83006 1.19858 1.15885 0.95931 0.96828 0.89694 0.92162 0.92547 0.92041 0.90280 0.86265 0.88110 0.76936 0.91226 0.84260 0.82502 0.83447 0.86770 0.91008 0.91961 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 10.24 71.98 0.74 -2.40 16 2 C 0.12 3.26 5.88 86.38 0.51 3.77 16 3 N -0.60 -20.50 2.09 -701.69 -1.47 -21.97 16 4 C 0.12 4.40 5.64 85.63 0.48 4.88 16 5 C 0.42 20.69 7.85 87.66 0.69 21.38 16 6 O -0.62 -36.07 16.01 -3.07 -0.05 -36.12 16 7 N -0.57 -30.19 5.29 -306.98 -1.62 -31.82 16 8 C -0.33 -19.46 9.68 84.04 0.81 -18.64 16 9 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 10 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 11 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 12 Si 0.99 43.95 29.55 68.60 2.03 45.98 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 14 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 16 C 0.25 8.81 6.55 38.20 0.25 9.06 16 17 C -0.24 -6.82 9.20 22.41 0.21 -6.61 16 18 C -0.03 -0.82 10.03 22.24 0.22 -0.60 16 19 C -0.27 -7.21 9.04 22.39 0.20 -7.01 16 20 C 0.16 5.21 6.68 22.49 0.15 5.36 16 21 O -0.35 -11.02 10.49 -92.48 -0.97 -11.99 16 22 C 0.02 0.41 9.81 113.37 1.11 1.53 16 23 C -0.26 -9.93 9.14 22.49 0.21 -9.73 16 24 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.06 1.84 8.07 -2.39 -0.02 1.82 16 28 H 0.08 2.07 6.19 -2.39 -0.01 2.05 16 29 H 0.12 3.60 8.07 -2.39 -0.02 3.58 16 30 H 0.10 3.49 6.19 -2.39 -0.01 3.48 16 31 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 32 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 33 H 0.14 3.34 6.14 -2.91 -0.02 3.33 16 34 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 35 H 0.15 2.93 6.29 -2.91 -0.02 2.91 16 36 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.12 7.67 -2.39 -0.02 1.10 16 38 H 0.06 1.10 7.65 -2.39 -0.02 1.08 16 39 H 0.10 4.27 6.14 -2.91 -0.02 4.25 16 Total: -1.00 -74.12 329.46 4.58 -69.54 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.34 Total: 35.57 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 6.05 Total: 0.85 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -2.81 Total: -103.83 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -1.02 Total: -48.11 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -74.12 4.58 -69.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343036736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.680 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds