Wall clock time and date at job start Tue Mar 31 2020 00:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47685 * 2 1 4 4 C 1.46897 * 111.00097 * 193.95460 * 3 2 1 5 5 C 1.50700 * 109.47376 * 66.04388 * 4 3 2 6 6 O 1.21296 * 119.99914 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00081 * 179.97438 * 5 4 3 8 8 C 1.37093 * 119.99835 * 179.97438 * 7 5 4 9 9 H 1.08001 * 120.00245 * 0.02562 * 8 7 5 10 10 C 1.38954 * 120.00169 * 179.97438 * 8 7 5 11 11 N 1.31416 * 119.99530 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00227 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47043 * 60.00743 * 12 10 8 14 14 H 1.48505 * 109.46870 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47278 * 300.00241 * 12 10 8 16 16 C 1.39961 * 111.00097 * 69.99700 * 3 2 1 17 17 C 1.38727 * 120.09051 * 60.30101 * 16 3 2 18 18 C 1.38223 * 119.98187 * 180.29610 * 17 16 3 19 19 C 1.38258 * 120.15878 * 359.67966 * 18 17 16 20 20 C 1.38285 * 120.17838 * 0.02562 * 19 18 17 21 21 C 1.38501 * 120.01933 * 359.97438 * 20 19 18 22 22 O 1.36011 * 120.07901 * 180.02562 * 21 20 19 23 23 C 1.42903 * 117.00244 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.46645 * 60.00376 * 1 2 3 25 25 H 1.08997 * 109.47407 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46688 * 300.00430 * 1 2 3 27 27 H 1.09001 * 109.47277 * 239.99117 * 2 1 3 28 28 H 1.09003 * 109.47081 * 119.99927 * 2 1 3 29 29 H 1.09005 * 109.47047 * 186.04262 * 4 3 2 30 30 H 1.08995 * 109.47135 * 306.04249 * 4 3 2 31 31 H 0.96997 * 119.99966 * 0.02562 * 7 5 4 32 32 H 0.97001 * 119.99474 * 179.97438 * 11 10 8 33 33 H 1.08001 * 120.00798 * 0.02562 * 17 16 3 34 34 H 1.07992 * 119.92161 * 179.70538 * 18 17 16 35 35 H 1.08000 * 119.91147 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.99078 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 38 38 H 1.09001 * 109.46938 * 59.99837 * 23 22 21 39 39 H 1.09004 * 109.46926 * 299.99958 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4501 1.4375 -0.3307 5 6 3.6536 0.9852 -1.7538 6 8 2.7009 0.6514 -2.4262 7 7 4.8943 0.9516 -2.2793 8 6 5.0795 0.5397 -3.5737 9 1 4.2312 0.2424 -4.1724 10 6 6.3585 0.5055 -4.1157 11 7 7.3906 0.8676 -3.3873 12 14 6.6107 -0.0551 -5.8796 13 1 5.8568 0.8382 -6.7955 14 1 8.0566 -0.0013 -6.2140 15 1 6.1195 -1.4482 -6.0313 16 6 1.7656 2.0068 1.2278 17 6 2.3092 1.4901 2.3949 18 6 2.0517 2.1026 3.6070 19 6 1.2586 3.2338 3.6590 20 6 0.7184 3.7580 2.4990 21 6 0.9716 3.1503 1.2805 22 8 0.4413 3.6652 0.1387 23 6 -0.3677 4.8359 0.2694 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8899 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8115 2.4598 -0.2192 30 1 4.0028 0.7814 0.3416 31 1 5.6562 1.2182 -1.7414 32 1 8.2835 0.8434 -3.7656 33 1 2.9297 0.6070 2.3569 34 1 2.4715 1.6967 4.5155 35 1 1.0603 3.7094 4.6082 36 1 0.0996 4.6421 2.5431 37 1 -0.7262 5.1415 -0.7135 38 1 0.2248 5.6400 0.7058 39 1 -1.2183 4.6194 0.9158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343080855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:36 Heat of formation + Delta-G solvation = -31.191711 kcal Electronic energy + Delta-G solvation = -21821.448750 eV Core-core repulsion = 18537.051923 eV Total energy + Delta-G solvation = -3284.396827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38648 -38.54233 -37.42941 -35.97528 -33.78916 -31.28389 -30.80205 -30.12735 -29.67059 -27.21258 -26.17122 -24.09517 -23.03618 -21.95578 -20.63943 -19.07515 -18.07555 -17.79409 -16.54242 -15.98842 -15.71006 -15.39345 -14.87408 -14.62542 -14.51284 -14.28346 -14.02990 -13.67030 -13.54974 -13.21029 -12.51584 -12.25988 -12.19506 -11.93228 -11.67939 -11.49031 -11.44430 -11.14066 -11.04198 -10.96561 -10.89722 -10.45796 -10.38633 -10.16442 -9.40406 -8.85960 -8.39503 -8.01310 -7.92640 -7.83723 -6.36361 -3.76854 1.27178 1.48480 3.23814 3.28943 3.33533 3.41536 3.73862 3.95906 4.00141 4.26971 4.81579 4.92824 5.06324 5.12109 5.15435 5.19202 5.29003 5.38691 5.48275 5.50180 5.60909 5.65335 5.74125 5.89784 5.95674 5.98530 6.15899 6.25642 6.34866 6.37874 6.49576 6.60179 6.65456 6.78567 7.31953 7.36907 7.60049 7.87355 8.12140 8.67963 9.23599 9.60400 10.12723 10.81508 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024631 B = 0.004154 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.512657 B = 6738.164771 C = 6861.772061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.054 3.946 3 N -0.470 5.470 4 C 0.053 3.947 5 C 0.446 3.554 6 O -0.573 6.573 7 N -0.565 5.565 8 C -0.297 4.297 9 H 0.102 0.898 10 C 0.022 3.978 11 N -0.903 5.903 12 Si 0.930 3.070 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.069 3.931 17 C -0.113 4.113 18 C -0.152 4.152 19 C -0.089 4.089 20 C -0.211 4.211 21 C 0.151 3.849 22 O -0.287 6.287 23 C 0.024 3.976 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.102 0.898 28 H 0.024 0.976 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.392 0.608 32 H 0.271 0.729 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.051 0.949 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.820 5.122 14.300 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 N -0.192 5.192 4 C -0.077 4.077 5 C 0.231 3.769 6 O -0.457 6.457 7 N -0.202 5.202 8 C -0.427 4.427 9 H 0.120 0.880 10 C -0.179 4.179 11 N -0.545 5.545 12 Si 0.757 3.243 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.200 1.200 16 C -0.026 4.026 17 C -0.133 4.133 18 C -0.171 4.171 19 C -0.107 4.107 20 C -0.230 4.230 21 C 0.104 3.896 22 O -0.199 6.199 23 C -0.071 4.071 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.120 0.880 28 H 0.042 0.958 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.225 0.775 32 H 0.081 0.919 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.492 5.079 13.175 18.205 hybrid contribution 1.084 -0.217 0.339 1.156 sum -10.407 4.862 13.514 17.736 Atomic orbital electron populations 1.21629 0.95279 1.00542 1.01932 1.22290 0.96054 0.87257 1.01569 1.59145 1.15940 1.18002 1.26066 1.21886 0.87446 1.01903 0.96485 1.19682 0.84033 0.84863 0.88280 1.90503 1.40333 1.52945 1.61920 1.41847 1.06480 1.58537 1.13363 1.19647 0.94027 1.40607 0.88401 0.87972 1.25245 0.94995 0.97620 1.00084 1.69612 0.99271 1.48248 1.37348 0.85927 0.76965 0.79310 0.82063 1.19919 1.21035 1.19957 1.18229 0.99683 0.94941 0.89725 1.21567 0.99225 1.00022 0.92475 1.20891 1.01367 0.97355 0.97457 1.20880 0.96587 0.95789 0.97442 1.21161 1.06550 1.03127 0.92165 1.18990 0.93040 0.92303 0.85285 1.86372 1.62778 1.42087 1.28630 1.23064 0.93848 0.86530 1.03693 0.91568 0.92935 0.93933 0.87987 0.95833 0.89437 0.93323 0.77521 0.91899 0.85622 0.86161 0.86083 0.85476 0.88326 0.93052 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.95 37.16 0.37 -1.78 16 2 C 0.05 0.96 5.16 -3.83 -0.02 0.94 16 3 N -0.47 -8.73 3.95 -172.32 -0.68 -9.41 16 4 C 0.05 1.02 5.09 -4.98 -0.03 1.00 16 5 C 0.45 10.88 7.37 -10.99 -0.08 10.80 16 6 O -0.57 -15.78 14.02 5.54 0.08 -15.70 16 7 N -0.57 -14.66 5.29 -10.96 -0.06 -14.72 16 8 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 9 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 10 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 11 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 12 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 C 0.07 1.10 3.76 -83.56 -0.31 0.79 16 17 C -0.11 -1.53 8.56 -39.41 -0.34 -1.87 16 18 C -0.15 -1.73 10.04 -39.58 -0.40 -2.12 16 19 C -0.09 -0.95 10.04 -39.56 -0.40 -1.35 16 20 C -0.21 -2.50 9.04 -39.47 -0.36 -2.85 16 21 C 0.15 2.26 6.70 -39.08 -0.26 2.00 16 22 O -0.29 -4.51 10.24 -19.78 -0.20 -4.71 16 23 C 0.02 0.25 9.81 101.05 0.99 1.24 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.64 7.52 -51.93 -0.39 0.25 16 27 H 0.10 2.12 5.79 -51.93 -0.30 1.81 16 28 H 0.02 0.37 6.85 -51.93 -0.36 0.02 16 29 H 0.09 1.63 8.06 -51.93 -0.42 1.21 16 30 H 0.05 0.85 7.66 -51.93 -0.40 0.45 16 31 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 32 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.13 1.61 7.12 -52.49 -0.37 1.23 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.13 1.19 6.30 -52.49 -0.33 0.86 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 39 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -32.35 326.66 -6.62 -38.97 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.31 Total: 9.78 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.07 Total: -1.25 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.01 Total: -48.32 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.12 Total: -20.41 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.35 -6.62 -38.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343080855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.782 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds