Wall clock time and date at job start Tue Mar 31 2020 00:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47685 * 2 1 4 4 C 1.46897 * 111.00097 * 193.95460 * 3 2 1 5 5 C 1.50700 * 109.47376 * 66.04388 * 4 3 2 6 6 O 1.21296 * 119.99914 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00081 * 179.97438 * 5 4 3 8 8 C 1.37093 * 119.99835 * 179.97438 * 7 5 4 9 9 H 1.08001 * 120.00245 * 0.02562 * 8 7 5 10 10 C 1.38954 * 120.00169 * 179.97438 * 8 7 5 11 11 N 1.31416 * 119.99530 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00227 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47043 * 60.00743 * 12 10 8 14 14 H 1.48505 * 109.46870 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47278 * 300.00241 * 12 10 8 16 16 C 1.39961 * 111.00097 * 69.99700 * 3 2 1 17 17 C 1.38727 * 120.09051 * 60.30101 * 16 3 2 18 18 C 1.38223 * 119.98187 * 180.29610 * 17 16 3 19 19 C 1.38258 * 120.15878 * 359.67966 * 18 17 16 20 20 C 1.38285 * 120.17838 * 0.02562 * 19 18 17 21 21 C 1.38501 * 120.01933 * 359.97438 * 20 19 18 22 22 O 1.36011 * 120.07901 * 180.02562 * 21 20 19 23 23 C 1.42903 * 117.00244 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.46645 * 60.00376 * 1 2 3 25 25 H 1.08997 * 109.47407 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46688 * 300.00430 * 1 2 3 27 27 H 1.09001 * 109.47277 * 239.99117 * 2 1 3 28 28 H 1.09003 * 109.47081 * 119.99927 * 2 1 3 29 29 H 1.09005 * 109.47047 * 186.04262 * 4 3 2 30 30 H 1.08995 * 109.47135 * 306.04249 * 4 3 2 31 31 H 0.96997 * 119.99966 * 0.02562 * 7 5 4 32 32 H 0.97001 * 119.99474 * 179.97438 * 11 10 8 33 33 H 1.08001 * 120.00798 * 0.02562 * 17 16 3 34 34 H 1.07992 * 119.92161 * 179.70538 * 18 17 16 35 35 H 1.08000 * 119.91147 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.99078 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 38 38 H 1.09001 * 109.46938 * 59.99837 * 23 22 21 39 39 H 1.09004 * 109.46926 * 299.99958 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4501 1.4375 -0.3307 5 6 3.6536 0.9852 -1.7538 6 8 2.7009 0.6514 -2.4262 7 7 4.8943 0.9516 -2.2793 8 6 5.0795 0.5397 -3.5737 9 1 4.2312 0.2424 -4.1724 10 6 6.3585 0.5055 -4.1157 11 7 7.3906 0.8676 -3.3873 12 14 6.6107 -0.0551 -5.8796 13 1 5.8568 0.8382 -6.7955 14 1 8.0566 -0.0013 -6.2140 15 1 6.1195 -1.4482 -6.0313 16 6 1.7656 2.0068 1.2278 17 6 2.3092 1.4901 2.3949 18 6 2.0517 2.1026 3.6070 19 6 1.2586 3.2338 3.6590 20 6 0.7184 3.7580 2.4990 21 6 0.9716 3.1503 1.2805 22 8 0.4413 3.6652 0.1387 23 6 -0.3677 4.8359 0.2694 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8899 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8115 2.4598 -0.2192 30 1 4.0028 0.7814 0.3416 31 1 5.6562 1.2182 -1.7414 32 1 8.2835 0.8434 -3.7656 33 1 2.9297 0.6070 2.3569 34 1 2.4715 1.6967 4.5155 35 1 1.0603 3.7094 4.6082 36 1 0.0996 4.6421 2.5431 37 1 -0.7262 5.1415 -0.7135 38 1 0.2248 5.6400 0.7058 39 1 -1.2183 4.6194 0.9158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343080855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:35 Heat of formation + Delta-G solvation = -53.435569 kcal Electronic energy + Delta-G solvation = -21822.413316 eV Core-core repulsion = 18537.051923 eV Total energy + Delta-G solvation = -3285.361393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.48824 -40.19002 -38.71503 -37.22292 -35.84677 -33.31187 -32.12632 -31.10027 -30.89278 -28.23674 -27.66437 -25.92239 -24.22084 -22.91575 -21.92449 -20.91102 -19.85883 -19.08467 -17.95337 -17.05185 -16.92928 -16.85571 -16.41766 -16.13065 -15.94433 -15.56284 -15.42730 -15.29505 -14.82117 -14.34237 -14.09092 -13.61863 -13.50623 -13.36453 -13.00314 -12.90925 -12.68849 -12.55939 -12.45699 -12.41410 -12.12464 -12.01545 -11.91095 -11.77059 -11.41091 -10.32154 -9.99666 -9.78208 -9.29098 -9.01372 -8.45367 -5.94236 0.31163 0.53747 1.40205 1.41582 1.52924 2.04640 2.28668 2.51607 2.69615 2.81733 3.20806 3.34715 3.97494 4.02647 4.13033 4.19945 4.27292 4.34809 4.41355 4.43472 4.43717 4.47806 4.59790 4.63601 4.66876 4.75847 4.82780 4.90203 5.16523 5.29231 5.37985 5.41567 5.48050 5.58609 5.84971 5.90934 6.05558 6.28597 6.61078 6.78801 7.13319 7.55918 8.12065 8.72043 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024631 B = 0.004154 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.512657 B = 6738.164771 C = 6861.772061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.056 3.944 3 N -0.487 5.487 4 C 0.067 3.933 5 C 0.444 3.556 6 O -0.609 6.609 7 N -0.574 5.574 8 C -0.332 4.332 9 H 0.079 0.921 10 C -0.012 4.012 11 N -0.922 5.922 12 Si 0.994 3.006 13 H -0.273 1.273 14 H -0.270 1.270 15 H -0.271 1.271 16 C 0.036 3.964 17 C -0.119 4.119 18 C -0.149 4.149 19 C -0.079 4.079 20 C -0.207 4.207 21 C 0.130 3.870 22 O -0.327 6.327 23 C 0.017 3.983 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.395 0.605 32 H 0.278 0.722 33 H 0.128 0.872 34 H 0.149 0.851 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 5.846 16.448 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.070 4.070 3 N -0.208 5.208 4 C -0.063 4.063 5 C 0.231 3.769 6 O -0.495 6.495 7 N -0.211 5.211 8 C -0.462 4.462 9 H 0.097 0.903 10 C -0.212 4.212 11 N -0.563 5.563 12 Si 0.817 3.183 13 H -0.198 1.198 14 H -0.194 1.194 15 H -0.196 1.196 16 C -0.059 4.059 17 C -0.139 4.139 18 C -0.168 4.168 19 C -0.097 4.097 20 C -0.226 4.226 21 C 0.084 3.916 22 O -0.240 6.240 23 C -0.077 4.077 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.229 0.771 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.122 0.878 38 H 0.084 0.916 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.684 5.818 15.355 20.153 hybrid contribution 1.084 -0.378 -0.224 1.170 sum -10.601 5.440 15.131 19.259 Atomic orbital electron populations 1.21516 0.93972 1.01570 1.01093 1.22200 0.97129 0.87244 1.00462 1.59018 1.14804 1.18357 1.28664 1.21698 0.89238 1.02296 0.93036 1.20586 0.82964 0.83266 0.90071 1.90474 1.41344 1.54133 1.63540 1.41906 1.07194 1.59043 1.12964 1.19630 0.94086 1.42833 0.89643 0.90289 1.26043 0.94199 0.96983 1.03981 1.69678 0.99661 1.48056 1.38859 0.84981 0.77515 0.78771 0.77008 1.19803 1.19394 1.19611 1.18360 1.02157 0.96241 0.89130 1.21645 0.99290 1.00322 0.92649 1.21244 1.00813 0.97209 0.97484 1.21348 0.94836 0.95037 0.98480 1.21479 1.06324 1.03542 0.91274 1.19256 0.93606 0.92573 0.86210 1.86303 1.63773 1.43937 1.29979 1.23304 0.94173 0.85485 1.04754 0.94039 0.90918 0.92948 0.91828 0.93900 0.88770 0.91245 0.77128 0.91301 0.85455 0.83372 0.82446 0.82979 0.87840 0.91573 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.96 9.95 71.98 0.72 -3.24 16 2 C 0.06 2.02 5.16 86.30 0.45 2.47 16 3 N -0.49 -18.42 3.95 -699.09 -2.76 -21.18 16 4 C 0.07 2.66 5.09 85.56 0.44 3.10 16 5 C 0.44 22.58 7.37 87.66 0.65 23.22 16 6 O -0.61 -35.34 14.02 -3.08 -0.04 -35.39 16 7 N -0.57 -30.84 5.29 -306.98 -1.62 -32.46 16 8 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 9 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 10 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 11 N -0.92 -50.88 13.05 21.66 0.28 -50.59 16 12 Si 0.99 43.86 29.55 68.60 2.03 45.89 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 C 0.04 1.11 3.76 38.22 0.14 1.25 16 17 C -0.12 -3.01 8.56 22.38 0.19 -2.82 16 18 C -0.15 -2.86 10.04 22.27 0.22 -2.63 16 19 C -0.08 -1.36 10.04 22.29 0.22 -1.14 16 20 C -0.21 -4.29 9.04 22.34 0.20 -4.09 16 21 C 0.13 3.77 6.70 22.59 0.15 3.92 16 22 O -0.33 -10.28 10.24 -93.68 -0.96 -11.23 16 23 C 0.02 0.34 9.81 113.37 1.11 1.45 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 26 H 0.05 1.55 7.52 -2.39 -0.02 1.53 16 27 H 0.06 2.78 5.79 -2.39 -0.01 2.77 16 28 H 0.04 1.35 6.85 -2.39 -0.02 1.33 16 29 H 0.09 3.57 8.06 -2.38 -0.02 3.55 16 30 H 0.07 2.42 7.66 -2.39 -0.02 2.41 16 31 H 0.40 20.24 7.90 -92.71 -0.73 19.51 16 32 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.13 3.06 7.12 -2.91 -0.02 3.04 16 34 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.15 2.28 6.30 -2.91 -0.02 2.26 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.07 1.06 7.66 -2.39 -0.02 1.04 16 39 H 0.07 1.05 7.66 -2.38 -0.02 1.04 16 Total: -1.00 -72.40 326.66 3.02 -69.37 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.33 Total: 32.95 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.77 Total: 2.64 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -4.10 Total: -104.23 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -1.00 Total: -46.62 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -72.40 3.02 -69.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343080855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.939 kcal (2) G-P(sol) polarization free energy of solvation -72.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds