Wall clock time and date at job start Tue Mar 31 2020 01:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99947 * 2 1 4 4 C 1.52997 * 109.47515 * 66.04655 * 3 2 1 5 5 C 1.50701 * 109.47212 * 179.97438 * 4 3 2 6 6 C 1.38159 * 120.03133 * 265.00010 * 5 4 3 7 7 C 1.38236 * 120.05848 * 179.97438 * 6 5 4 8 8 C 1.38294 * 120.11395 * 0.02562 * 7 6 5 9 9 C 1.38124 * 120.04986 * 0.02562 * 8 7 6 10 10 C 1.38717 * 120.02546 * 84.72533 * 5 4 3 11 11 O 1.35899 * 120.05527 * 359.97438 * 10 5 4 12 12 C 1.46898 * 110.99543 * 236.04312 * 2 1 3 13 13 C 1.50701 * 109.47292 * 293.95192 * 12 2 1 14 14 O 1.21290 * 120.00117 * 0.02562 * 13 12 2 15 15 N 1.34774 * 119.99764 * 180.02562 * 13 12 2 16 16 C 1.37105 * 119.99696 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99922 * 0.02562 * 16 15 13 18 18 C 1.38954 * 119.99874 * 180.02562 * 16 15 13 19 19 N 1.31418 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99937 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46985 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47058 * 120.00067 * 20 18 16 23 23 H 1.48500 * 109.47167 * 240.00131 * 20 18 16 24 24 H 1.08997 * 109.47044 * 59.99771 * 1 2 3 25 25 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47124 * 299.99969 * 1 2 3 27 27 H 1.09002 * 109.47104 * 306.04387 * 3 2 1 28 28 H 1.08998 * 109.46828 * 186.05219 * 3 2 1 29 29 H 1.09002 * 109.47153 * 59.99762 * 4 3 2 30 30 H 1.09001 * 109.46832 * 299.99953 * 4 3 2 31 31 H 1.08003 * 119.96941 * 359.97438 * 6 5 4 32 32 H 1.08004 * 119.94507 * 180.02562 * 7 6 5 33 33 H 1.07994 * 119.97278 * 180.02562 * 8 7 6 34 34 H 1.08002 * 120.02306 * 179.97438 * 9 8 7 35 35 H 0.96702 * 114.00001 * 90.00472 * 11 10 5 36 36 H 1.08997 * 109.47144 * 53.95829 * 12 2 1 37 37 H 1.09002 * 109.46776 * 173.95798 * 12 2 1 38 38 H 0.96996 * 120.00560 * 0.02562 * 15 13 12 39 39 H 0.96994 * 119.99726 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1721 3.4642 1.3184 6 6 3.3970 3.7341 1.8977 7 6 3.8937 5.0241 1.8977 8 6 3.1661 6.0478 1.3187 9 6 1.9405 5.7833 0.7392 10 6 1.4429 4.4881 0.7319 11 8 0.2406 4.2241 0.1560 12 6 1.9953 -0.7660 -1.1376 13 6 1.6368 -2.2205 -0.9727 14 8 1.0046 -2.5832 -0.0033 15 7 2.0187 -3.1182 -1.9026 16 6 1.6921 -4.4413 -1.7529 17 1 1.1285 -4.7641 -0.8901 18 6 2.0863 -5.3670 -2.7114 19 7 2.7726 -4.9742 -3.7611 20 14 1.6407 -7.1696 -2.5078 21 1 0.8706 -7.3502 -1.2510 22 1 0.8148 -7.6086 -3.6612 23 1 2.8818 -7.9828 -2.4496 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5611 1.9273 -0.8309 28 1 3.0797 1.3443 -0.1084 29 1 2.0658 1.5016 2.1492 30 1 0.5472 2.0845 1.4264 31 1 3.9670 2.9365 2.3509 32 1 4.8516 5.2330 2.3507 33 1 3.5565 7.0547 1.3196 34 1 1.3725 6.5831 0.2875 35 1 -0.5105 4.3022 0.7601 36 1 1.5610 -0.3873 -2.0627 37 1 3.0796 -0.6612 -1.1756 38 1 2.5246 -2.8283 -2.6778 39 1 3.0474 -5.6204 -4.4302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344170152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:40 Heat of formation + Delta-G solvation = -50.255487 kcal Electronic energy + Delta-G solvation = -20838.034897 eV Core-core repulsion = 17552.811403 eV Total energy + Delta-G solvation = -3285.223494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.12982 -38.53516 -36.81505 -36.53734 -33.89219 -32.95971 -31.19485 -30.18365 -28.72545 -27.52635 -25.40183 -24.10609 -22.78489 -21.85962 -20.54981 -19.09922 -18.51092 -17.79081 -16.33607 -16.15013 -16.03253 -15.51787 -15.03520 -14.70030 -14.60046 -14.08560 -13.90915 -13.65180 -13.48008 -13.04016 -12.74882 -12.59795 -12.17135 -12.00543 -11.75970 -11.64885 -11.42481 -11.24937 -11.15107 -10.90043 -10.65978 -10.52008 -10.31435 -10.18707 -9.44597 -9.06295 -8.76214 -8.36395 -7.92870 -7.76413 -6.37841 -3.78418 1.03295 1.11324 3.18889 3.29046 3.36341 3.40944 3.96003 4.02108 4.07958 4.29371 4.66678 4.72412 4.85912 5.04891 5.13566 5.24482 5.27393 5.30844 5.41444 5.55033 5.70115 5.75990 5.81816 5.85343 5.94445 6.04653 6.06338 6.15657 6.18618 6.26321 6.34820 6.42586 6.61125 6.65055 7.37086 7.46650 7.49897 7.59225 8.11252 8.66664 9.22481 9.59472 10.11608 10.80166 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041655 B = 0.002863 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.031765 B = 9777.784509 C = 9954.464727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.064 3.936 4 C -0.071 4.071 5 C -0.101 4.101 6 C -0.100 4.100 7 C -0.128 4.128 8 C -0.112 4.112 9 C -0.146 4.146 10 C 0.106 3.894 11 O -0.494 6.494 12 C 0.046 3.954 13 C 0.446 3.554 14 O -0.577 6.577 15 N -0.566 5.566 16 C -0.297 4.297 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.903 5.903 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.014 0.986 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.387 0.613 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 21.234 7.924 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.243 5.243 3 C -0.064 4.064 4 C -0.109 4.109 5 C -0.102 4.102 6 C -0.118 4.118 7 C -0.146 4.146 8 C -0.131 4.131 9 C -0.165 4.165 10 C 0.062 3.938 11 O -0.304 6.304 12 C -0.086 4.086 13 C 0.231 3.769 14 O -0.461 6.461 15 N -0.203 5.203 16 C -0.426 4.426 17 H 0.121 0.879 18 C -0.181 4.181 19 N -0.544 5.544 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.033 0.967 25 H 0.112 0.888 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.243 0.757 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.225 0.775 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.253 20.531 8.339 22.161 hybrid contribution -0.338 -0.144 -0.919 0.990 sum -0.085 20.387 7.420 21.695 Atomic orbital electron populations 1.22544 0.86921 1.04146 0.98933 1.61572 1.08678 1.11444 1.42619 1.22048 0.99915 0.88521 0.95948 1.20467 1.01286 0.90131 0.98976 1.20330 0.95853 0.96068 0.97934 1.21064 0.94832 0.96984 0.98965 1.21179 1.00109 0.92950 1.00369 1.21009 0.94484 0.99354 0.98215 1.21417 0.97700 0.96031 1.01351 1.18366 0.87901 0.91665 0.95892 1.84864 1.14431 1.92027 1.39057 1.21855 1.00624 0.94074 0.92007 1.19756 0.85286 0.86665 0.85152 1.90475 1.43852 1.80184 1.31635 1.41884 1.49517 1.07377 1.21537 1.19748 1.32678 0.82298 1.07901 0.87882 1.25262 0.96909 1.00537 0.95354 1.69626 1.38193 1.35610 1.11011 0.85806 0.78183 0.82004 0.78385 1.19236 1.20819 1.20777 0.96748 0.88795 0.92222 0.94657 0.91165 0.90072 0.90787 0.85356 0.85840 0.85862 0.85645 0.75684 0.93529 0.89510 0.77504 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.96 60.07 0.54 0.92 16 2 N -0.52 -9.15 4.50 -244.38 -1.10 -10.25 16 3 C 0.06 0.91 4.94 -3.83 -0.02 0.89 16 4 C -0.07 -0.86 4.99 -27.88 -0.14 -1.00 16 5 C -0.10 -1.11 5.15 -104.47 -0.54 -1.65 16 6 C -0.10 -0.99 9.68 -39.61 -0.38 -1.38 16 7 C -0.13 -1.11 10.04 -39.56 -0.40 -1.50 16 8 C -0.11 -0.94 10.04 -39.60 -0.40 -1.34 16 9 C -0.15 -1.37 9.99 -39.43 -0.39 -1.76 16 10 C 0.11 1.13 6.68 -39.22 -0.26 0.87 16 11 O -0.49 -5.03 12.65 -19.42 -0.25 -5.28 16 12 C 0.05 0.87 5.45 -4.98 -0.03 0.84 16 13 C 0.45 10.82 7.48 -10.99 -0.08 10.74 16 14 O -0.58 -15.82 13.91 5.55 0.08 -15.74 16 15 N -0.57 -14.68 5.29 -10.96 -0.06 -14.74 16 16 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 17 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 18 C 0.02 0.56 5.50 -17.46 -0.10 0.46 16 19 N -0.90 -24.95 13.05 55.50 0.72 -24.22 16 20 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 25 H 0.09 1.92 5.82 -51.93 -0.30 1.62 16 26 H 0.06 0.88 6.47 -51.93 -0.34 0.54 16 27 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 28 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 29 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 30 H 0.07 0.87 6.11 -51.93 -0.32 0.55 16 31 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 32 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.39 2.22 9.06 45.56 0.41 2.63 16 36 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 37 H 0.09 1.50 7.93 -51.93 -0.41 1.09 16 38 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 330.19 15.07 4.98 4.98 Total: -1.00 -32.84 330.19 -7.57 -40.41 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.58 Total: 10.99 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.34 Total: -2.43 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.43 Total: -49.21 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.17 Total: -21.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.84 -7.57 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344170152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.845 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds