Wall clock time and date at job start Tue Mar 31 2020 01:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99947 * 2 1 4 4 C 1.52997 * 109.47515 * 66.04655 * 3 2 1 5 5 C 1.50701 * 109.47212 * 179.97438 * 4 3 2 6 6 C 1.38159 * 120.03133 * 265.00010 * 5 4 3 7 7 C 1.38236 * 120.05848 * 179.97438 * 6 5 4 8 8 C 1.38294 * 120.11395 * 0.02562 * 7 6 5 9 9 C 1.38124 * 120.04986 * 0.02562 * 8 7 6 10 10 C 1.38717 * 120.02546 * 84.72533 * 5 4 3 11 11 O 1.35899 * 120.05527 * 359.97438 * 10 5 4 12 12 C 1.46898 * 110.99543 * 236.04312 * 2 1 3 13 13 C 1.50701 * 109.47292 * 293.95192 * 12 2 1 14 14 O 1.21290 * 120.00117 * 0.02562 * 13 12 2 15 15 N 1.34774 * 119.99764 * 180.02562 * 13 12 2 16 16 C 1.37105 * 119.99696 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99922 * 0.02562 * 16 15 13 18 18 C 1.38954 * 119.99874 * 180.02562 * 16 15 13 19 19 N 1.31418 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99937 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46985 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47058 * 120.00067 * 20 18 16 23 23 H 1.48500 * 109.47167 * 240.00131 * 20 18 16 24 24 H 1.08997 * 109.47044 * 59.99771 * 1 2 3 25 25 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47124 * 299.99969 * 1 2 3 27 27 H 1.09002 * 109.47104 * 306.04387 * 3 2 1 28 28 H 1.08998 * 109.46828 * 186.05219 * 3 2 1 29 29 H 1.09002 * 109.47153 * 59.99762 * 4 3 2 30 30 H 1.09001 * 109.46832 * 299.99953 * 4 3 2 31 31 H 1.08003 * 119.96941 * 359.97438 * 6 5 4 32 32 H 1.08004 * 119.94507 * 180.02562 * 7 6 5 33 33 H 1.07994 * 119.97278 * 180.02562 * 8 7 6 34 34 H 1.08002 * 120.02306 * 179.97438 * 9 8 7 35 35 H 0.96702 * 114.00001 * 90.00472 * 11 10 5 36 36 H 1.08997 * 109.47144 * 53.95829 * 12 2 1 37 37 H 1.09002 * 109.46776 * 173.95798 * 12 2 1 38 38 H 0.96996 * 120.00560 * 0.02562 * 15 13 12 39 39 H 0.96994 * 119.99726 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1721 3.4642 1.3184 6 6 3.3970 3.7341 1.8977 7 6 3.8937 5.0241 1.8977 8 6 3.1661 6.0478 1.3187 9 6 1.9405 5.7833 0.7392 10 6 1.4429 4.4881 0.7319 11 8 0.2406 4.2241 0.1560 12 6 1.9953 -0.7660 -1.1376 13 6 1.6368 -2.2205 -0.9727 14 8 1.0046 -2.5832 -0.0033 15 7 2.0187 -3.1182 -1.9026 16 6 1.6921 -4.4413 -1.7529 17 1 1.1285 -4.7641 -0.8901 18 6 2.0863 -5.3670 -2.7114 19 7 2.7726 -4.9742 -3.7611 20 14 1.6407 -7.1696 -2.5078 21 1 0.8706 -7.3502 -1.2510 22 1 0.8148 -7.6086 -3.6612 23 1 2.8818 -7.9828 -2.4496 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5611 1.9273 -0.8309 28 1 3.0797 1.3443 -0.1084 29 1 2.0658 1.5016 2.1492 30 1 0.5472 2.0845 1.4264 31 1 3.9670 2.9365 2.3509 32 1 4.8516 5.2330 2.3507 33 1 3.5565 7.0547 1.3196 34 1 1.3725 6.5831 0.2875 35 1 -0.5105 4.3022 0.7601 36 1 1.5610 -0.3873 -2.0627 37 1 3.0796 -0.6612 -1.1756 38 1 2.5246 -2.8283 -2.6778 39 1 3.0474 -5.6204 -4.4302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344170152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:38 Heat of formation + Delta-G solvation = -74.496589 kcal Electronic energy + Delta-G solvation = -20839.086070 eV Core-core repulsion = 17552.811403 eV Total energy + Delta-G solvation = -3286.274667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.89883 -40.30749 -38.02588 -37.50301 -35.90415 -33.96500 -33.26525 -30.91585 -29.89735 -28.88755 -27.03839 -25.62738 -23.48286 -22.94320 -21.57250 -20.98607 -19.85636 -19.21945 -17.82617 -17.13715 -16.93685 -16.64521 -16.55113 -16.26171 -15.91692 -15.55548 -15.18887 -15.12156 -14.73048 -14.10310 -13.85574 -13.81503 -13.50237 -13.39959 -13.01878 -12.88149 -12.73681 -12.51225 -12.50337 -12.41548 -12.35105 -12.10537 -11.70607 -11.46304 -11.26409 -10.30596 -9.99862 -9.75835 -9.46243 -9.21859 -8.46056 -5.94791 0.33896 0.41212 1.36870 1.41802 1.56367 2.05194 2.28668 2.66263 2.85664 3.20485 3.37138 3.42140 3.90941 3.94760 4.11284 4.19218 4.24129 4.33610 4.40958 4.49255 4.52405 4.58326 4.65174 4.67206 4.70737 4.92457 4.97253 5.10999 5.12255 5.28006 5.41873 5.47711 5.58822 5.64966 5.88336 5.97786 6.07629 6.20125 6.61159 6.87731 7.13463 7.56638 8.12434 8.71808 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041655 B = 0.002863 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.031765 B = 9777.784509 C = 9954.464727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.535 5.535 3 C 0.071 3.929 4 C -0.062 4.062 5 C -0.119 4.119 6 C -0.110 4.110 7 C -0.132 4.132 8 C -0.110 4.110 9 C -0.156 4.156 10 C 0.096 3.904 11 O -0.509 6.509 12 C 0.056 3.944 13 C 0.443 3.557 14 O -0.612 6.612 15 N -0.576 5.576 16 C -0.331 4.331 17 H 0.079 0.921 18 C -0.015 4.015 19 N -0.922 5.922 20 Si 0.994 3.006 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.270 1.270 24 H 0.024 0.976 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.139 0.861 35 H 0.404 0.596 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.395 0.605 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.806 22.592 7.948 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.259 5.259 3 C -0.057 4.057 4 C -0.099 4.099 5 C -0.120 4.120 6 C -0.128 4.128 7 C -0.149 4.149 8 C -0.128 4.128 9 C -0.174 4.174 10 C 0.051 3.949 11 O -0.321 6.321 12 C -0.075 4.075 13 C 0.231 3.769 14 O -0.498 6.498 15 N -0.213 5.213 16 C -0.460 4.460 17 H 0.097 0.903 18 C -0.214 4.214 19 N -0.563 5.563 20 Si 0.818 3.182 21 H -0.197 1.197 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.262 0.738 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.229 0.771 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.939 21.918 8.358 23.476 hybrid contribution -0.553 -0.469 -0.898 1.154 sum 0.385 21.450 7.460 22.713 Atomic orbital electron populations 1.22415 0.86898 1.02052 1.00518 1.61564 1.08913 1.13373 1.42048 1.22059 0.99976 0.86482 0.97154 1.20328 1.01383 0.90820 0.97416 1.20274 0.96739 0.95386 0.99606 1.21251 0.94614 0.97982 0.98933 1.21482 1.00998 0.92410 1.00055 1.21370 0.93901 1.00578 0.96951 1.21649 0.98321 0.95887 1.01550 1.18535 0.88135 0.92194 0.96026 1.84807 1.15059 1.92141 1.40120 1.21742 1.01983 0.90459 0.93323 1.20696 0.83717 0.88597 0.83917 1.90453 1.45071 1.81394 1.32928 1.41952 1.50063 1.07121 1.22166 1.19702 1.34237 0.83953 1.08119 0.90262 1.26063 0.96280 1.04412 0.94668 1.69687 1.38181 1.37140 1.11325 0.84856 0.78266 0.76839 0.78280 1.19750 1.19607 1.19568 0.95765 0.92569 0.90043 0.94938 0.90648 0.90574 0.90699 0.84773 0.83605 0.83306 0.84335 0.73767 0.91967 0.87458 0.77092 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 8.96 127.69 1.14 2.13 16 2 N -0.53 -18.52 4.50 -927.07 -4.17 -22.70 16 3 C 0.07 1.94 4.94 86.30 0.43 2.36 16 4 C -0.06 -1.44 4.99 29.85 0.15 -1.29 16 5 C -0.12 -2.48 5.15 -19.77 -0.10 -2.58 16 6 C -0.11 -2.00 9.68 22.25 0.22 -1.78 16 7 C -0.13 -1.95 10.04 22.28 0.22 -1.73 16 8 C -0.11 -1.55 10.04 22.26 0.22 -1.33 16 9 C -0.16 -2.59 9.99 22.36 0.22 -2.36 16 10 C 0.10 1.90 6.68 22.51 0.15 2.05 16 11 O -0.51 -9.74 12.65 -92.42 -1.17 -10.91 16 12 C 0.06 2.10 5.45 85.56 0.47 2.56 16 13 C 0.44 21.91 7.48 87.66 0.66 22.57 16 14 O -0.61 -34.60 13.91 -3.06 -0.04 -34.64 16 15 N -0.58 -30.45 5.29 -306.98 -1.62 -32.07 16 16 C -0.33 -19.14 9.68 84.04 0.81 -18.32 16 17 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 18 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 19 N -0.92 -50.66 13.05 21.67 0.28 -50.38 16 20 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 24 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 2.36 5.82 -2.39 -0.01 2.34 16 26 H 0.08 2.36 6.47 -2.39 -0.02 2.34 16 27 H 0.03 0.92 8.12 -2.39 -0.02 0.90 16 28 H 0.08 1.98 7.93 -2.39 -0.02 1.96 16 29 H 0.08 1.82 8.05 -2.39 -0.02 1.80 16 30 H 0.07 1.68 6.11 -2.39 -0.01 1.67 16 31 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 32 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 33 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.40 4.17 9.06 -74.06 -0.67 3.50 16 36 H 0.06 2.15 8.12 -2.39 -0.02 2.13 16 37 H 0.11 3.57 7.93 -2.39 -0.02 3.55 16 38 H 0.40 19.94 7.90 -92.71 -0.73 19.20 16 39 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -70.74 330.19 0.03 -70.70 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: -0.33 Total: 32.44 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.06 Total: 1.94 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -5.51 Total: -105.14 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -1.21 Total: -45.55 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -70.74 0.03 -70.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344170152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.793 kcal (2) G-P(sol) polarization free energy of solvation -70.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds