Wall clock time and date at job start Tue Mar 31 2020 00:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46498 * 109.46678 * 2 1 4 4 C 1.46501 * 120.00348 * 280.73190 * 3 2 1 5 5 C 1.50698 * 109.47330 * 270.00720 * 4 3 2 6 6 H 1.07999 * 120.00044 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99869 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99961 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00107 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47211 * 89.99766 * 9 7 5 11 11 H 1.48504 * 109.47107 * 209.99921 * 9 7 5 12 12 H 1.48504 * 109.47150 * 329.99690 * 9 7 5 13 13 C 1.34773 * 120.00152 * 100.73978 * 3 2 1 14 14 O 1.21588 * 120.00256 * 187.07118 * 13 3 2 15 15 C 1.47527 * 119.99720 * 7.07009 * 13 3 2 16 16 C 1.39986 * 120.59965 * 328.29355 * 15 13 3 17 17 C 1.38337 * 118.34936 * 179.71253 * 16 15 13 18 18 C 1.38349 * 119.45727 * 0.52928 * 17 16 15 19 19 C 1.50701 * 119.40696 * 179.73373 * 18 17 16 20 20 N 1.31884 * 121.18623 * 359.45555 * 18 17 16 21 21 C 1.32232 * 121.80064 * 0.27823 * 20 18 17 22 22 O 1.35426 * 119.79786 * 179.97438 * 21 20 18 23 23 C 1.42902 * 117.00187 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.47346 * 59.99659 * 1 2 3 25 25 H 1.08996 * 109.46744 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46934 * 299.99557 * 1 2 3 27 27 H 1.08999 * 109.46934 * 240.00443 * 2 1 3 28 28 H 1.08991 * 109.46962 * 119.99840 * 2 1 3 29 29 H 1.09005 * 109.46571 * 30.00674 * 4 3 2 30 30 H 1.09003 * 109.47349 * 149.99972 * 4 3 2 31 31 H 0.97002 * 120.00255 * 180.02562 * 8 7 5 32 32 H 1.08005 * 120.82179 * 0.02562 * 16 15 13 33 33 H 1.08006 * 120.26809 * 180.26649 * 17 16 15 34 34 H 1.09005 * 109.47079 * 269.73020 * 19 18 17 35 35 H 1.08999 * 109.47486 * 149.73273 * 19 18 17 36 36 H 1.09001 * 109.47219 * 29.72626 * 19 18 17 37 37 H 1.09001 * 109.46633 * 180.02562 * 23 22 21 38 38 H 1.09001 * 109.47063 * 299.99994 * 23 22 21 39 39 H 1.08999 * 109.47229 * 60.00296 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0397 2.1507 -1.2465 5 6 3.3631 1.9492 -1.9386 6 1 4.1134 1.3121 -1.4942 7 6 3.6160 2.5782 -3.1392 8 7 4.7711 2.4028 -3.7430 9 14 2.3185 3.6808 -3.9075 10 1 2.5022 5.0727 -3.4237 11 1 2.4540 3.6487 -5.3860 12 1 0.9678 3.1975 -3.5236 13 6 2.4480 1.9441 1.1467 14 8 2.7315 3.1262 1.1748 15 6 2.5742 1.1260 2.3679 16 6 1.7107 0.0481 2.5958 17 6 1.8746 -0.6914 3.7534 18 6 2.8694 -0.3418 4.6490 19 6 3.0430 -1.1444 5.9126 20 7 3.6720 0.6780 4.4143 21 6 3.5620 1.4142 3.3213 22 8 4.4079 2.4527 3.1215 23 6 5.3903 2.6930 4.1311 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.2339 1.8107 -1.8971 30 1 1.9040 3.2088 -1.0227 31 1 4.9492 2.8456 -4.5874 32 1 0.9390 -0.2032 1.8831 33 1 1.2284 -1.5322 3.9584 34 1 2.4318 -0.7118 6.7048 35 1 4.0908 -1.1282 6.2124 36 1 2.7318 -2.1738 5.7348 37 1 6.0001 3.5508 3.8477 38 1 4.8938 2.8979 5.0796 39 1 6.0258 1.8137 4.2362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347465524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:58 Heat of formation + Delta-G solvation = -34.329817 kcal Electronic energy + Delta-G solvation = -22158.431693 eV Core-core repulsion = 18873.898788 eV Total energy + Delta-G solvation = -3284.532905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.15856 -40.34261 -39.14345 -37.18481 -35.17684 -34.02490 -32.82171 -31.81010 -30.12222 -29.16106 -27.76267 -25.03095 -24.48934 -23.88109 -23.27059 -20.68026 -19.20753 -19.13821 -18.26291 -18.05971 -17.21993 -16.89383 -16.40360 -16.10124 -15.87973 -15.27395 -15.19034 -14.96793 -14.69096 -14.40931 -13.91039 -13.66107 -13.51345 -13.29862 -13.26373 -13.19063 -12.95793 -12.70045 -12.55978 -12.40024 -12.29087 -12.03310 -11.84599 -11.76155 -11.11939 -10.85378 -10.81173 -10.43486 -9.61375 -9.34059 -8.36071 -6.41805 -0.29604 0.19448 1.30764 1.36185 1.44341 1.79318 2.07139 2.22101 2.29713 2.71338 2.97964 3.10230 3.60148 3.70928 3.90910 4.03023 4.20689 4.29641 4.32227 4.33660 4.35351 4.56817 4.61638 4.69645 4.74047 4.83869 4.86582 4.93945 4.96473 4.97645 5.02592 5.17095 5.38251 5.44065 5.51055 5.59923 6.19304 6.22624 6.58396 6.59776 6.76022 7.17429 7.34424 8.81264 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021759 B = 0.005454 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.492679 B = 5132.560822 C = 5934.167092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.067 3.933 3 N -0.593 5.593 4 C 0.227 3.773 5 C -0.539 4.539 6 H 0.023 0.977 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.950 3.050 10 H -0.277 1.277 11 H -0.271 1.271 12 H -0.235 1.235 13 C 0.551 3.449 14 O -0.581 6.581 15 C -0.239 4.239 16 C -0.028 4.028 17 C -0.204 4.204 18 C 0.176 3.824 19 C -0.102 4.102 20 N -0.555 5.555 21 C 0.348 3.652 22 O -0.318 6.318 23 C 0.036 3.964 24 H 0.055 0.945 25 H 0.110 0.890 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.056 0.944 30 H 0.018 0.982 31 H 0.269 0.731 32 H 0.192 0.808 33 H 0.194 0.806 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.332 -11.449 18.577 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.054 4.054 3 N -0.324 5.324 4 C 0.105 3.895 5 C -0.578 4.578 6 H 0.041 0.959 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.772 3.228 10 H -0.203 1.203 11 H -0.196 1.196 12 H -0.158 1.158 13 C 0.340 3.660 14 O -0.462 6.462 15 C -0.245 4.245 16 C -0.053 4.053 17 C -0.223 4.223 18 C 0.039 3.961 19 C -0.159 4.159 20 N -0.281 5.281 21 C 0.169 3.831 22 O -0.223 6.223 23 C -0.059 4.059 24 H 0.074 0.926 25 H 0.128 0.872 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.208 0.792 33 H 0.211 0.789 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.402 -10.380 18.780 23.427 hybrid contribution 0.122 0.870 -1.330 1.594 sum -9.281 -9.510 17.450 21.933 Atomic orbital electron populations 1.22252 0.92961 1.04758 1.02685 1.22600 0.96438 0.81661 1.04724 1.47867 1.62027 1.15056 1.07403 1.19322 0.95976 0.92081 0.82112 1.21543 1.00804 1.29526 1.05922 0.95864 1.25868 0.97996 0.97539 0.97186 1.70054 1.25079 1.45239 1.18151 0.85688 0.80431 0.78870 0.77799 1.20314 1.19627 1.15837 1.18390 0.76966 0.86805 0.83825 1.90702 1.51628 1.17959 1.85913 1.20040 1.03320 1.03744 0.97370 1.22790 0.96196 0.88958 0.97334 1.22278 1.01844 1.04258 0.93932 1.22079 0.88085 0.88977 0.97003 1.20946 1.04206 0.99443 0.91270 1.67317 1.30974 1.10219 1.19627 1.19958 0.87819 0.86375 0.88959 1.86460 1.43738 1.44510 1.47611 1.23088 0.89722 1.02550 0.90495 0.92615 0.87161 0.91518 0.91132 0.86973 0.92618 0.96361 0.92173 0.79160 0.78882 0.88289 0.90720 0.86951 0.87423 0.91294 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.65 9.16 71.99 0.66 -2.99 16 2 C 0.07 2.08 5.60 86.38 0.48 2.56 16 3 N -0.59 -26.26 2.47 -829.93 -2.05 -28.31 16 4 C 0.23 11.69 4.27 85.63 0.37 12.05 16 5 C -0.54 -33.30 9.94 25.60 0.25 -33.05 16 6 H 0.02 1.61 8.06 -2.91 -0.02 1.59 16 7 C 0.01 0.74 5.47 84.66 0.46 1.20 16 8 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 9 Si 0.95 45.69 27.47 68.60 1.88 47.57 16 10 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 13 C 0.55 26.12 7.33 86.69 0.64 26.75 16 14 O -0.58 -33.18 15.39 13.77 0.21 -32.97 16 15 C -0.24 -8.93 5.58 -19.91 -0.11 -9.04 16 16 C -0.03 -0.70 7.58 22.72 0.17 -0.53 16 17 C -0.20 -3.59 9.71 22.32 0.22 -3.38 16 18 C 0.18 3.69 6.78 42.58 0.29 3.98 16 19 C -0.10 -1.12 10.16 71.24 0.72 -0.39 16 20 N -0.56 -16.56 9.11 -296.06 -2.70 -19.26 16 21 C 0.35 13.16 7.48 85.13 0.64 13.79 16 22 O -0.32 -13.33 9.04 -69.45 -0.63 -13.96 16 23 C 0.04 1.07 10.38 113.37 1.18 2.24 16 24 H 0.05 1.37 7.73 -2.39 -0.02 1.35 16 25 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 1.33 7.16 -2.39 -0.02 1.32 16 27 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.11 2.95 3.88 -2.58 -0.01 2.94 16 29 H 0.06 2.57 6.71 -2.38 -0.02 2.56 16 30 H 0.02 1.02 6.76 -2.39 -0.02 1.00 16 31 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 32 H 0.19 3.75 3.05 -2.91 -0.01 3.74 16 33 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.11 0.55 8.07 -2.39 -0.02 0.53 16 37 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16 39 H 0.06 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -89.17 322.34 3.99 -85.18 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.01 Total: 9.70 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 5.97 Total: 13.20 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -4.45 Total: -108.72 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -0.42 Total: -46.93 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.57 kcal Total: -89.17 3.99 -85.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347465524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.852 kcal (2) G-P(sol) polarization free energy of solvation -89.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds