Wall clock time and date at job start Tue Mar 31 2020 00:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46938 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47198 * 120.00527 * 9 7 5 12 12 H 1.48498 * 109.47360 * 240.00281 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 C 1.50690 * 109.47185 * 180.02562 * 15 13 3 17 17 C 1.38258 * 119.55765 * 124.99892 * 16 15 13 18 18 C 1.38533 * 119.22350 * 179.97438 * 17 16 15 19 19 C 1.39142 * 118.37490 * 0.02562 * 18 17 16 20 20 O 1.35909 * 120.47515 * 180.02562 * 19 18 17 21 21 C 1.42897 * 117.00129 * 179.97438 * 20 19 18 22 22 C 1.38705 * 119.05245 * 359.97438 * 19 18 17 23 23 N 1.31843 * 120.68350 * 359.74931 * 22 19 18 24 24 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 25 25 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 26 26 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 28 28 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 29 29 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 30 30 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 31 31 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46762 * 300.00389 * 15 13 3 33 33 H 1.08998 * 109.46924 * 59.99727 * 15 13 3 34 34 H 1.08006 * 120.38730 * 359.96143 * 17 16 15 35 35 H 1.08001 * 120.81616 * 180.02562 * 18 17 16 36 36 H 1.09007 * 109.46907 * 179.97438 * 21 20 19 37 37 H 1.08993 * 109.47116 * 300.00064 * 21 20 19 38 38 H 1.09005 * 109.46908 * 59.99831 * 21 20 19 39 39 H 1.07997 * 119.65675 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.6007 1.2403 2.4172 11 1 6.6214 3.3972 3.5249 12 1 5.9203 1.4182 4.7383 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 6 2.3071 2.2333 -3.6177 17 6 3.2084 1.8326 -4.5864 18 6 3.4976 2.6886 -5.6366 19 6 2.8645 3.9270 -5.6738 20 8 3.1163 4.7997 -6.6848 21 6 2.4250 6.0499 -6.6499 22 6 1.9719 4.2578 -4.6650 23 7 1.7201 3.4120 -3.6854 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0955 3.1411 1.1383 30 1 1.5816 1.6877 2.0284 31 1 3.6753 3.5170 4.4435 32 1 2.6203 0.4232 -2.5321 33 1 0.9397 1.0094 -2.5279 34 1 3.6817 0.8637 -4.5251 35 1 4.1974 2.4016 -6.4076 36 1 2.7166 6.6505 -7.5116 37 1 1.3501 5.8717 -6.6778 38 1 2.6815 6.5814 -5.7335 39 1 1.4754 5.2167 -4.6840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354411187.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:50 Heat of formation + Delta-G solvation = -36.534784 kcal Electronic energy + Delta-G solvation = -21372.112868 eV Core-core repulsion = 18087.484349 eV Total energy + Delta-G solvation = -3284.628520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.66881 -39.03969 -37.95809 -35.14737 -32.88316 -32.35552 -32.05018 -30.00536 -28.46886 -27.50261 -26.34213 -23.49629 -23.01076 -22.76313 -21.64160 -18.37972 -18.12674 -17.13542 -16.39270 -16.22950 -16.01731 -15.88128 -15.09321 -14.68658 -14.32378 -14.16279 -14.01460 -13.44306 -13.26516 -12.99286 -12.75406 -12.50885 -12.15000 -12.02684 -11.86620 -11.71345 -11.60803 -11.28028 -11.11131 -10.84341 -10.66070 -10.47520 -10.07722 -9.66889 -9.55197 -9.26355 -8.79035 -8.39184 -8.27357 -7.55285 -5.99538 -4.03873 1.17039 1.36754 3.06924 3.32105 3.39514 3.43188 3.57667 3.77403 4.12383 4.43192 4.49230 4.65401 4.74972 4.87539 4.96905 5.05842 5.26157 5.27251 5.34926 5.38439 5.41454 5.53278 5.56968 5.70594 5.74238 5.84579 5.99079 6.09895 6.15150 6.29853 6.50233 6.56909 7.12108 7.16616 7.53538 7.64868 7.97990 8.15962 8.30134 8.53437 8.97216 9.23274 9.61286 11.08489 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.004313 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.077102 B = 6491.147406 C = 7246.451626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.512 3.488 14 O -0.525 6.525 15 C -0.091 4.091 16 C 0.118 3.882 17 C -0.129 4.129 18 C -0.109 4.109 19 C 0.064 3.936 20 O -0.316 6.316 21 C 0.024 3.976 22 C 0.027 3.973 23 N -0.418 5.418 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.031 0.969 31 H 0.262 0.738 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 -3.626 -18.614 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.297 3.703 14 O -0.401 6.401 15 C -0.132 4.132 16 C -0.021 4.021 17 C -0.149 4.149 18 C -0.136 4.136 19 C 0.017 3.983 20 O -0.228 6.228 21 C -0.071 4.071 22 C -0.132 4.132 23 N -0.127 5.127 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.831 -2.671 -17.948 18.778 hybrid contribution 1.418 -0.185 -0.079 1.433 sum -3.412 -2.856 -18.027 18.568 Atomic orbital electron populations 1.22236 0.96928 1.01279 1.02399 1.21399 0.93437 0.84356 1.02547 1.48224 1.64383 1.13140 1.07632 1.19232 0.96076 0.93674 0.78181 1.21498 0.97015 1.31604 1.06110 0.92472 1.24937 0.97764 0.95006 0.96473 1.69950 1.35538 1.33625 1.14338 0.86465 0.84791 0.78012 0.78275 1.19833 1.20955 1.20991 1.19931 0.78898 0.86964 0.84525 1.90691 1.44922 1.17583 1.86867 1.20678 1.03991 0.97279 0.91218 1.20595 0.94509 0.92107 0.94905 1.21800 0.98156 1.00743 0.94164 1.20805 1.01024 0.91698 1.00023 1.20071 0.97075 0.91369 0.89791 1.86033 1.65369 1.27037 1.44358 1.23094 0.96922 0.83493 1.03558 1.22877 0.98712 1.00414 0.91198 1.67328 1.23221 1.01936 1.20176 0.92091 0.92994 0.92276 0.91801 0.90049 0.93961 0.95136 0.92856 0.88045 0.87876 0.84119 0.84221 0.88139 0.92485 0.92268 0.82804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.70 5.93 -4.04 -0.02 1.68 16 3 N -0.60 -12.91 2.46 -175.05 -0.43 -13.34 16 4 C 0.25 6.61 5.17 -5.19 -0.03 6.59 16 5 C -0.52 -15.09 9.39 -34.44 -0.32 -15.41 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.51 11.01 7.61 -10.98 -0.08 10.92 16 14 O -0.52 -13.90 14.92 5.56 0.08 -13.82 16 15 C -0.09 -1.40 4.65 -29.04 -0.13 -1.54 16 16 C 0.12 1.90 5.76 -82.58 -0.48 1.43 16 17 C -0.13 -1.69 9.70 -39.47 -0.38 -2.07 16 18 C -0.11 -1.37 10.13 -39.14 -0.40 -1.77 16 19 C 0.06 0.87 6.71 -39.07 -0.26 0.60 16 20 O -0.32 -3.74 10.51 -19.45 -0.20 -3.94 16 21 C 0.02 0.20 9.82 101.05 0.99 1.19 16 22 C 0.03 0.40 10.22 -17.37 -0.18 0.23 16 23 N -0.42 -7.46 9.23 -9.35 -0.09 -7.55 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.68 7.20 -51.93 -0.37 0.30 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.81 6.45 -51.93 -0.33 0.48 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.04 1.29 7.41 -51.93 -0.38 0.90 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.10 1.24 7.13 -51.93 -0.37 0.87 16 33 H 0.10 1.36 7.16 -51.93 -0.37 0.99 16 34 H 0.14 1.39 7.95 -52.48 -0.42 0.97 16 35 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.40 7.68 -51.93 -0.40 0.00 16 38 H 0.06 0.48 7.68 -51.93 -0.40 0.08 16 39 H 0.15 1.91 6.32 -52.49 -0.33 1.58 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -36.50 331.76 -6.39 -42.90 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -5.46 Total: -1.65 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -1.01 Total: 1.57 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.22 Total: -47.23 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.12 Total: -17.76 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.50 -6.39 -42.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354411187.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.361 kcal (2) G-P(sol) polarization free energy of solvation -36.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds