Wall clock time and date at job start Tue Mar 31 2020 01:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47114 * 351.65300 * 3 2 1 5 5 C 1.37105 * 119.99994 * 92.58943 * 4 3 2 6 6 H 1.07997 * 119.99912 * 219.54147 * 5 4 3 7 7 C 1.38954 * 119.99939 * 39.81503 * 5 4 3 8 8 N 1.31406 * 119.99593 * 208.77207 * 7 5 4 9 9 Si 1.86800 * 119.99852 * 28.77301 * 7 5 4 10 10 H 1.48495 * 109.47182 * 94.75545 * 9 7 5 11 11 H 1.48497 * 109.46910 * 214.75534 * 9 7 5 12 12 H 1.48504 * 109.47056 * 334.75541 * 9 7 5 13 13 C 1.34774 * 120.00285 * 272.58917 * 4 3 2 14 14 O 1.21294 * 119.99684 * 355.07857 * 13 4 3 15 15 C 1.50702 * 120.00301 * 175.08292 * 13 4 3 16 16 C 1.52993 * 110.29046 * 288.88440 * 15 13 4 17 17 C 1.54622 * 110.32614 * 166.63961 * 15 13 4 18 18 C 1.54947 * 102.83532 * 219.25931 * 17 15 13 19 19 N 1.48114 * 103.25326 * 37.38076 * 18 17 15 20 20 C 1.34779 * 127.03075 * 140.74729 * 19 18 17 21 21 C 1.50696 * 119.99981 * 359.95046 * 20 19 18 22 22 O 1.21280 * 119.99645 * 179.97438 * 20 19 18 23 23 C 1.47486 * 105.93309 * 320.70258 * 19 18 17 24 24 H 4.40638 * 5.51464 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.46908 * 231.65279 * 3 2 1 26 26 H 1.08993 * 109.46974 * 111.65301 * 3 2 1 27 27 H 0.97010 * 119.99504 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47397 * 67.20682 * 16 15 13 29 29 H 1.09000 * 109.47551 * 187.21131 * 16 15 13 30 30 H 1.09005 * 109.47430 * 307.21161 * 16 15 13 31 31 H 1.08998 * 110.73904 * 337.59421 * 17 15 13 32 32 H 1.08998 * 110.73904 * 100.92242 * 17 15 13 33 33 H 1.09001 * 110.65862 * 278.93297 * 18 17 15 34 34 H 1.08997 * 110.80017 * 155.88771 * 18 17 15 35 35 H 1.08994 * 109.47629 * 0.02562 * 21 20 19 36 36 H 1.09000 * 109.47076 * 120.00278 * 21 20 19 37 37 H 1.09000 * 109.47060 * 239.99851 * 21 20 19 38 38 H 1.09003 * 109.91414 * 266.09158 * 23 19 18 39 39 H 1.09001 * 110.07039 * 144.90253 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3657 0.2005 5 6 3.4144 -2.1596 -0.8818 6 1 3.1568 -3.2082 -0.8632 7 6 4.0342 -1.6161 -2.0005 8 7 3.8150 -2.1324 -3.1888 9 14 5.1789 -0.1517 -1.8150 10 1 6.5803 -0.6299 -1.7031 11 1 5.0502 0.7307 -3.0024 12 1 4.8161 0.6084 -0.5918 13 6 3.3101 -1.8424 1.4489 14 8 3.1490 -1.1132 2.4046 15 6 3.7063 -3.2814 1.6574 16 6 2.5365 -4.2080 1.3199 17 6 4.1683 -3.5054 3.1159 18 6 5.3674 -4.4730 2.9523 19 7 6.0236 -3.9942 1.7138 20 6 7.3478 -3.9099 1.4773 21 6 8.3311 -4.3285 2.5397 22 8 7.7479 -3.4966 0.4095 23 6 4.9315 -3.6297 0.7919 24 1 -1.0498 -0.0004 0.0003 25 1 3.0090 0.6384 0.8060 26 1 3.0091 0.3800 -0.9551 27 1 4.2479 -1.7532 -3.9697 28 1 2.3320 -4.1601 0.2503 29 1 2.7921 -5.2311 1.5955 30 1 1.6519 -3.8928 1.8733 31 1 4.4886 -2.5667 3.5677 32 1 3.3764 -3.9682 3.7048 33 1 5.0199 -5.4991 2.8317 34 1 6.0460 -4.3955 3.8018 35 1 7.7896 -4.6690 3.4222 36 1 8.9528 -5.1394 2.1601 37 1 8.9623 -3.4804 2.8050 38 1 4.6987 -4.4722 0.1407 39 1 5.2204 -2.7662 0.1927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366966366.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:39 Heat of formation + Delta-G solvation = 9.200744 kcal Electronic energy + Delta-G solvation = -22970.381783 eV Core-core repulsion = 19687.736505 eV Total energy + Delta-G solvation = -3282.645278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.26450 -38.74907 -36.80905 -35.25748 -33.03670 -32.41702 -31.59404 -29.68521 -29.24182 -26.80883 -25.62508 -25.06656 -23.35743 -21.03240 -19.07651 -18.64981 -18.25564 -17.08111 -16.21770 -15.86792 -15.79256 -15.24622 -14.98913 -14.47065 -14.22543 -13.70439 -13.37772 -13.14936 -12.88296 -12.79263 -12.60009 -12.19553 -12.05134 -11.93446 -11.85650 -11.67641 -11.46678 -11.12520 -10.92399 -10.75295 -10.35102 -10.27731 -10.17103 -9.71379 -9.50283 -9.38997 -9.24139 -8.65910 -8.24611 -7.90514 -6.59460 -4.14054 2.97489 3.10254 3.22419 3.25478 3.30384 3.34786 3.53322 3.64240 4.11590 4.43903 4.74571 4.81543 4.88019 5.10107 5.14714 5.28839 5.38216 5.48599 5.51536 5.59764 5.68673 5.86007 5.91827 6.07726 6.12087 6.18852 6.26845 6.28808 6.45419 6.53350 6.54411 6.57156 6.79842 6.88781 7.24059 7.93825 7.97448 8.16902 8.27103 8.52941 8.85677 9.22429 9.55996 10.49586 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.008480 C = 0.006567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.054832 B = 3301.007650 C = 4263.013146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.162 4.162 3 C 0.211 3.789 4 N -0.455 5.455 5 C -0.365 4.365 6 H 0.112 0.888 7 C 0.081 3.919 8 N -0.836 5.836 9 Si 0.845 3.155 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.255 1.255 13 C 0.496 3.504 14 O -0.591 6.591 15 C -0.070 4.070 16 C -0.135 4.135 17 C -0.115 4.115 18 C 0.097 3.903 19 N -0.623 5.623 20 C 0.522 3.478 21 C -0.169 4.169 22 O -0.545 6.545 23 C 0.121 3.879 24 H 0.211 0.789 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.277 0.723 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 -4.802 9.983 11.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.163 4.163 3 C 0.089 3.911 4 N -0.174 5.174 5 C -0.491 4.491 6 H 0.129 0.871 7 C -0.129 4.129 8 N -0.469 5.469 9 Si 0.669 3.331 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.179 1.179 13 C 0.285 3.715 14 O -0.475 6.475 15 C -0.073 4.073 16 C -0.192 4.192 17 C -0.154 4.154 18 C -0.026 4.026 19 N -0.358 5.358 20 C 0.311 3.689 21 C -0.228 4.228 22 O -0.422 6.422 23 C 0.000 4.000 24 H 0.228 0.772 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.803 -4.219 9.591 10.632 hybrid contribution 0.265 0.614 -0.254 0.715 sum 2.068 -3.605 9.337 10.220 Atomic orbital electron populations 1.24632 0.95612 1.01348 1.03498 1.23874 0.95003 0.99301 0.98168 1.18740 0.83276 0.87182 1.01931 1.43575 1.56582 1.11792 1.05491 1.19093 1.41757 0.95377 0.92832 0.87094 1.25286 0.95821 0.97370 0.94443 1.69859 1.37345 1.41537 0.98119 0.87460 0.83615 0.83140 0.78887 1.19119 1.20486 1.17873 1.20125 0.79363 0.89082 0.82891 1.90538 1.56316 1.59439 1.41199 1.21256 0.96378 0.94097 0.95617 1.21880 0.96197 0.97402 1.03733 1.22707 0.96918 1.00285 0.95464 1.22619 0.94595 0.97989 0.87407 1.49112 1.05300 1.63948 1.17452 1.20365 0.81501 0.78205 0.88839 1.21868 0.98995 1.03795 0.98165 1.90760 1.77947 1.46765 1.26734 1.22416 0.83870 1.02773 0.90951 0.77226 0.89146 0.89249 0.91265 0.90172 0.92427 0.92681 0.89469 0.90115 0.91054 0.90306 0.90628 0.89104 0.89105 0.91012 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.36 19.25 29.55 0.57 -3.79 16 2 C -0.16 -3.51 13.66 -37.12 -0.51 -4.02 16 3 C 0.21 4.80 4.04 -6.83 -0.03 4.77 16 4 N -0.46 -10.76 2.05 -117.93 -0.24 -11.00 16 5 C -0.36 -9.06 6.26 -14.93 -0.09 -9.15 16 6 H 0.11 2.79 4.64 -52.49 -0.24 2.55 16 7 C 0.08 2.11 5.11 -17.47 -0.09 2.02 16 8 N -0.84 -22.58 13.96 55.50 0.77 -21.80 16 9 Si 0.84 20.16 26.26 -169.99 -4.46 15.70 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.25 -5.86 5.60 56.52 0.32 -5.55 16 13 C 0.50 11.20 6.34 -10.99 -0.07 11.13 16 14 O -0.59 -14.39 15.21 5.55 0.08 -14.30 16 15 C -0.07 -1.29 0.62 -154.29 -0.10 -1.38 16 16 C -0.13 -2.22 8.02 37.15 0.30 -1.92 16 17 C -0.12 -1.74 5.88 -24.85 -0.15 -1.89 16 18 C 0.10 1.22 6.83 -2.13 -0.01 1.21 16 19 N -0.62 -10.59 3.29 -169.76 -0.56 -11.15 16 20 C 0.52 9.18 8.00 -10.99 -0.09 9.10 16 21 C -0.17 -1.93 10.23 36.00 0.37 -1.56 16 22 O -0.54 -12.43 17.44 5.56 0.10 -12.33 16 23 C 0.12 2.40 4.59 -2.98 -0.01 2.39 16 24 H 0.21 2.95 7.80 -54.10 -0.42 2.53 16 25 H 0.09 2.02 7.43 -51.93 -0.39 1.63 16 26 H 0.09 2.03 4.41 -51.93 -0.23 1.80 16 27 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.08 1.48 5.74 -51.93 -0.30 1.18 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.49 7.11 -51.93 -0.37 1.12 16 32 H 0.08 1.04 7.86 -51.93 -0.41 0.63 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.77 6.39 -51.93 -0.33 0.44 16 35 H 0.07 0.66 5.92 -51.93 -0.31 0.36 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.41 7.49 -51.93 -0.39 1.02 16 39 H 0.11 2.62 5.76 -51.93 -0.30 2.32 16 LS Contribution 316.42 15.07 4.77 4.77 Total: -1.00 -32.25 316.42 -4.47 -36.71 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.02 Total: 6.51 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 0.09 Total: 6.90 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.03 Total: -43.96 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: 0.18 Total: -26.63 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.46 Total: 15.70 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.25 -4.47 -36.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366966366.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.915 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds