Wall clock time and date at job start Tue Mar 31 2020 01:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47114 * 351.65300 * 3 2 1 5 5 C 1.37105 * 119.99994 * 92.58943 * 4 3 2 6 6 H 1.07997 * 119.99912 * 219.54147 * 5 4 3 7 7 C 1.38954 * 119.99939 * 39.81503 * 5 4 3 8 8 N 1.31406 * 119.99593 * 208.77207 * 7 5 4 9 9 Si 1.86800 * 119.99852 * 28.77301 * 7 5 4 10 10 H 1.48495 * 109.47182 * 94.75545 * 9 7 5 11 11 H 1.48497 * 109.46910 * 214.75534 * 9 7 5 12 12 H 1.48504 * 109.47056 * 334.75541 * 9 7 5 13 13 C 1.34774 * 120.00285 * 272.58917 * 4 3 2 14 14 O 1.21294 * 119.99684 * 355.07857 * 13 4 3 15 15 C 1.50702 * 120.00301 * 175.08292 * 13 4 3 16 16 C 1.52993 * 110.29046 * 288.88440 * 15 13 4 17 17 C 1.54622 * 110.32614 * 166.63961 * 15 13 4 18 18 C 1.54947 * 102.83532 * 219.25931 * 17 15 13 19 19 N 1.48114 * 103.25326 * 37.38076 * 18 17 15 20 20 C 1.34779 * 127.03075 * 140.74729 * 19 18 17 21 21 C 1.50696 * 119.99981 * 359.95046 * 20 19 18 22 22 O 1.21280 * 119.99645 * 179.97438 * 20 19 18 23 23 C 1.47486 * 105.93309 * 320.70258 * 19 18 17 24 24 H 4.40638 * 5.51464 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.46908 * 231.65279 * 3 2 1 26 26 H 1.08993 * 109.46974 * 111.65301 * 3 2 1 27 27 H 0.97010 * 119.99504 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47397 * 67.20682 * 16 15 13 29 29 H 1.09000 * 109.47551 * 187.21131 * 16 15 13 30 30 H 1.09005 * 109.47430 * 307.21161 * 16 15 13 31 31 H 1.08998 * 110.73904 * 337.59421 * 17 15 13 32 32 H 1.08998 * 110.73904 * 100.92242 * 17 15 13 33 33 H 1.09001 * 110.65862 * 278.93297 * 18 17 15 34 34 H 1.08997 * 110.80017 * 155.88771 * 18 17 15 35 35 H 1.08994 * 109.47629 * 0.02562 * 21 20 19 36 36 H 1.09000 * 109.47076 * 120.00278 * 21 20 19 37 37 H 1.09000 * 109.47060 * 239.99851 * 21 20 19 38 38 H 1.09003 * 109.91414 * 266.09158 * 23 19 18 39 39 H 1.09001 * 110.07039 * 144.90253 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3657 0.2005 5 6 3.4144 -2.1596 -0.8818 6 1 3.1568 -3.2082 -0.8632 7 6 4.0342 -1.6161 -2.0005 8 7 3.8150 -2.1324 -3.1888 9 14 5.1789 -0.1517 -1.8150 10 1 6.5803 -0.6299 -1.7031 11 1 5.0502 0.7307 -3.0024 12 1 4.8161 0.6084 -0.5918 13 6 3.3101 -1.8424 1.4489 14 8 3.1490 -1.1132 2.4046 15 6 3.7063 -3.2814 1.6574 16 6 2.5365 -4.2080 1.3199 17 6 4.1683 -3.5054 3.1159 18 6 5.3674 -4.4730 2.9523 19 7 6.0236 -3.9942 1.7138 20 6 7.3478 -3.9099 1.4773 21 6 8.3311 -4.3285 2.5397 22 8 7.7479 -3.4966 0.4095 23 6 4.9315 -3.6297 0.7919 24 1 -1.0498 -0.0004 0.0003 25 1 3.0090 0.6384 0.8060 26 1 3.0091 0.3800 -0.9551 27 1 4.2479 -1.7532 -3.9697 28 1 2.3320 -4.1601 0.2503 29 1 2.7921 -5.2311 1.5955 30 1 1.6519 -3.8928 1.8733 31 1 4.4886 -2.5667 3.5677 32 1 3.3764 -3.9682 3.7048 33 1 5.0199 -5.4991 2.8317 34 1 6.0460 -4.3955 3.8018 35 1 7.7896 -4.6690 3.4222 36 1 8.9528 -5.1394 2.1601 37 1 8.9623 -3.4804 2.8050 38 1 4.6987 -4.4722 0.1407 39 1 5.2204 -2.7662 0.1927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366966366.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:37 Heat of formation + Delta-G solvation = -13.195938 kcal Electronic energy + Delta-G solvation = -22971.352976 eV Core-core repulsion = 19687.736505 eV Total energy + Delta-G solvation = -3283.616471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.81243 -40.30806 -38.31500 -37.11922 -34.64525 -34.11381 -33.30983 -30.78332 -30.53504 -28.47702 -27.06692 -26.91720 -24.67195 -22.56747 -20.55028 -20.41322 -19.77449 -18.61440 -17.75114 -17.53275 -17.33016 -16.87268 -16.41721 -16.14023 -15.84250 -15.23648 -14.98363 -14.89406 -14.50571 -14.29037 -13.88974 -13.74599 -13.41577 -13.23379 -13.10529 -13.03734 -12.92891 -12.82508 -12.61066 -12.34859 -12.03560 -11.83245 -11.59869 -11.41796 -11.17449 -11.04559 -10.92699 -10.43543 -9.86329 -9.64550 -8.61989 -6.13454 1.11931 1.25462 1.31941 1.59400 1.66440 1.81040 1.92626 2.08830 2.13297 2.75477 2.93213 3.49171 3.58091 3.67633 3.94246 3.95962 4.20440 4.28713 4.38837 4.44139 4.48232 4.50341 4.64859 4.71054 4.78942 4.86490 4.97414 5.00748 5.06243 5.07240 5.20979 5.22925 5.28884 5.34808 5.46773 6.06428 6.18928 6.65991 6.70071 6.89538 7.19498 7.32786 7.68450 8.50746 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.008480 C = 0.006567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.054832 B = 3301.007650 C = 4263.013146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.231 4.231 3 C 0.209 3.791 4 N -0.468 5.468 5 C -0.343 4.343 6 H 0.105 0.895 7 C 0.048 3.952 8 N -0.872 5.872 9 Si 0.882 3.118 10 H -0.294 1.294 11 H -0.268 1.268 12 H -0.248 1.248 13 C 0.489 3.511 14 O -0.611 6.611 15 C -0.071 4.071 16 C -0.126 4.126 17 C -0.110 4.110 18 C 0.101 3.899 19 N -0.627 5.627 20 C 0.508 3.492 21 C -0.155 4.155 22 O -0.613 6.613 23 C 0.126 3.874 24 H 0.259 0.741 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.279 0.721 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -6.368 12.818 14.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.233 4.233 3 C 0.086 3.914 4 N -0.187 5.187 5 C -0.469 4.469 6 H 0.122 0.878 7 C -0.159 4.159 8 N -0.507 5.507 9 Si 0.707 3.293 10 H -0.221 1.221 11 H -0.192 1.192 12 H -0.172 1.172 13 C 0.279 3.721 14 O -0.496 6.496 15 C -0.075 4.075 16 C -0.183 4.183 17 C -0.149 4.149 18 C -0.020 4.020 19 N -0.360 5.360 20 C 0.300 3.700 21 C -0.213 4.213 22 O -0.496 6.496 23 C 0.002 3.998 24 H 0.275 0.725 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.895 -5.783 12.474 13.779 hybrid contribution 0.451 1.106 -1.040 1.584 sum 1.346 -4.677 11.434 12.427 Atomic orbital electron populations 1.25688 0.96444 0.97918 1.00027 1.23923 0.95477 1.02483 1.01380 1.18594 0.84907 0.86634 1.01227 1.43748 1.57185 1.12105 1.05685 1.19028 1.40070 0.95240 0.92598 0.87773 1.25638 0.96796 0.98841 0.94594 1.69883 1.39103 1.43184 0.98563 0.86882 0.80931 0.82015 0.79501 1.22096 1.19233 1.17173 1.20931 0.78219 0.90803 0.82109 1.90510 1.57025 1.60553 1.41530 1.21364 0.96464 0.91616 0.98008 1.21818 0.95421 0.99037 1.02024 1.22743 0.98897 1.00377 0.92858 1.22950 0.93923 0.98549 0.86530 1.49284 1.04907 1.63396 1.18431 1.21648 0.82265 0.76852 0.89281 1.21894 0.97768 1.04598 0.97072 1.90728 1.79068 1.49830 1.29932 1.22061 0.85530 1.00512 0.91656 0.72525 0.89783 0.90096 0.91130 0.92849 0.88525 0.92223 0.91679 0.86983 0.87748 0.86342 0.86996 0.87398 0.88246 0.91586 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.42 19.25 74.32 1.43 -4.99 16 2 C -0.23 -9.97 13.66 31.13 0.43 -9.54 16 3 C 0.21 9.76 4.04 84.57 0.34 10.10 16 4 N -0.47 -22.73 2.05 -645.41 -1.32 -24.06 16 5 C -0.34 -17.68 6.26 84.04 0.53 -17.15 16 6 H 0.11 5.46 4.64 -2.91 -0.01 5.45 16 7 C 0.05 2.60 5.11 84.93 0.43 3.03 16 8 N -0.87 -48.99 13.96 21.66 0.30 -48.69 16 9 Si 0.88 43.70 26.26 68.60 1.80 45.50 16 10 H -0.29 -15.78 7.11 99.48 0.71 -15.07 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.25 -11.83 5.60 99.48 0.56 -11.27 16 13 C 0.49 22.29 6.34 87.66 0.56 22.85 16 14 O -0.61 -29.88 15.21 -3.07 -0.05 -29.93 16 15 C -0.07 -2.55 0.62 -52.04 -0.03 -2.58 16 16 C -0.13 -3.90 8.02 71.98 0.58 -3.32 16 17 C -0.11 -2.99 5.88 31.81 0.19 -2.80 16 18 C 0.10 2.10 6.83 86.73 0.59 2.69 16 19 N -0.63 -20.38 3.29 -809.40 -2.66 -23.04 16 20 C 0.51 17.48 8.00 87.66 0.70 18.18 16 21 C -0.15 -3.00 10.23 71.23 0.73 -2.28 16 22 O -0.61 -29.06 17.44 -3.03 -0.05 -29.12 16 23 C 0.13 5.03 4.59 86.53 0.40 5.42 16 24 H 0.26 6.02 7.80 -4.43 -0.03 5.98 16 25 H 0.08 3.91 7.43 -2.39 -0.02 3.89 16 26 H 0.08 3.81 4.41 -2.39 -0.01 3.80 16 27 H 0.28 14.82 8.31 -92.70 -0.77 14.05 16 28 H 0.05 1.95 5.74 -2.39 -0.01 1.93 16 29 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.06 2.08 7.11 -2.39 -0.02 2.06 16 32 H 0.11 2.35 7.86 -2.39 -0.02 2.33 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.12 1.58 6.39 -2.39 -0.02 1.57 16 35 H 0.11 1.33 5.92 -2.39 -0.01 1.31 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 2.66 7.49 -2.39 -0.02 2.64 16 39 H 0.06 2.95 5.76 -2.39 -0.01 2.93 16 Total: -1.00 -76.68 316.42 5.80 -70.88 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.92 Total: 18.85 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 6.87 Total: 19.61 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -3.68 Total: -95.79 kcal Atomic # 8 Polarization: -58.95 SS G_CDS: -0.10 Total: -59.05 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.80 Total: 45.50 kcal Total: -76.68 5.80 -70.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366966366.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.680 kcal (2) G-P(sol) polarization free energy of solvation -76.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds