Wall clock time and date at job start Tue Mar 31 2020 01:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47607 * 260.00607 * 9 8 7 11 11 C 1.46494 * 119.99742 * 270.00170 * 10 9 8 12 12 C 1.34778 * 119.99464 * 89.99879 * 10 9 8 13 13 O 1.21584 * 120.00471 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99060 * 180.02562 * 12 10 9 15 15 C 1.46506 * 119.99769 * 179.97438 * 14 12 10 16 16 C 1.50696 * 109.47414 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00313 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00389 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99592 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47342 * 90.00598 * 20 18 16 22 22 H 1.48506 * 109.46640 * 210.00436 * 20 18 16 23 23 H 1.48496 * 109.47272 * 329.99871 * 20 18 16 24 24 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 26 26 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 27 27 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 28 28 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 29 29 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 30 30 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 31 31 H 1.09001 * 109.47053 * 20.00832 * 9 8 7 32 32 H 1.09002 * 109.47103 * 140.00310 * 9 8 7 33 33 H 1.08997 * 109.47373 * 90.00403 * 11 10 9 34 34 H 1.09007 * 109.47105 * 209.99919 * 11 10 9 35 35 H 1.08995 * 109.47320 * 329.99475 * 11 10 9 36 36 H 0.96996 * 120.00786 * 0.02562 * 14 12 10 37 37 H 1.09003 * 109.46767 * 300.00405 * 15 14 12 38 38 H 1.09006 * 109.46801 * 59.99710 * 15 14 12 39 39 H 0.96993 * 120.00002 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 7 4.3189 -0.5187 -1.3602 11 6 3.3047 -1.4710 -1.8190 12 6 5.3120 -0.1401 -2.1890 13 8 6.1539 0.6500 -1.8080 14 7 5.3716 -0.6374 -3.4403 15 6 6.4506 -0.2255 -4.3416 16 6 6.2888 -0.9198 -5.6693 17 1 5.4648 -1.6001 -5.8259 18 6 7.1932 -0.6872 -6.6837 19 7 7.0522 -1.2934 -7.8422 20 14 8.6188 0.4890 -6.4123 21 1 9.7851 -0.2610 -5.8810 22 1 8.9864 1.1270 -7.7020 23 1 8.2182 1.5362 -5.4386 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2128 2.3203 -0.0010 28 1 1.3339 4.5114 0.0026 29 1 3.7920 4.6381 -0.0024 30 1 5.1344 2.5754 -0.0023 31 1 5.2613 0.2452 0.3508 32 1 3.7927 -0.7115 0.6610 33 1 2.4744 -0.9282 -2.2705 34 1 3.7440 -2.1423 -2.5570 35 1 2.9412 -2.0514 -0.9710 36 1 4.6997 -1.2675 -3.7444 37 1 6.4090 0.8537 -4.4888 38 1 7.4120 -0.4958 -3.9046 39 1 7.6882 -1.1295 -8.5559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426416634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:47 Heat of formation + Delta-G solvation = -32.078439 kcal Electronic energy + Delta-G solvation = -21699.393512 eV Core-core repulsion = 18414.958234 eV Total energy + Delta-G solvation = -3284.435278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43373 -39.26923 -37.43101 -35.27998 -34.23615 -32.46652 -31.56795 -30.13220 -28.06346 -27.55995 -26.83504 -25.21649 -22.20674 -22.13922 -21.28784 -19.39630 -18.20234 -17.72653 -16.43242 -16.17584 -16.10115 -15.97517 -15.54695 -14.92310 -14.42357 -14.35225 -13.86375 -13.64846 -13.39588 -13.03107 -12.82592 -12.62325 -12.34933 -12.24203 -12.15289 -11.98874 -11.75193 -11.23113 -11.18433 -10.97564 -10.88636 -10.71059 -9.91255 -9.50438 -9.39570 -8.88718 -8.72078 -8.44958 -8.19042 -7.86466 -6.16205 -4.17509 1.27169 1.42648 3.15645 3.25396 3.31848 3.38566 3.47714 3.83729 3.89516 4.38830 4.67259 4.70742 4.82397 4.91825 4.95476 5.04485 5.19612 5.23514 5.30777 5.33315 5.39838 5.51642 5.65892 5.72517 5.91688 5.95241 5.98770 6.26813 6.41087 6.56731 6.72366 6.79335 6.92170 7.18871 7.29455 7.34316 7.48899 7.60192 8.32303 8.74765 8.86718 9.29365 9.46681 10.95908 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023048 B = 0.004309 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.551881 B = 6496.608091 C = 6997.730898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.138 3.862 4 C -0.216 4.216 5 C -0.082 4.082 6 C -0.161 4.161 7 C -0.054 4.054 8 C -0.133 4.133 9 C 0.185 3.815 10 N -0.633 5.633 11 C 0.091 3.909 12 C 0.697 3.303 13 O -0.602 6.602 14 N -0.723 5.723 15 C 0.238 3.762 16 C -0.540 4.540 17 H 0.078 0.922 18 C 0.077 3.923 19 N -0.895 5.895 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.260 1.260 24 H 0.098 0.902 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.392 0.608 37 H 0.022 0.978 38 H 0.018 0.982 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.318 4.120 18.082 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.092 3.908 4 C -0.234 4.234 5 C -0.101 4.101 6 C -0.179 4.179 7 C -0.073 4.073 8 C -0.135 4.135 9 C 0.061 3.939 10 N -0.370 5.370 11 C -0.053 4.053 12 C 0.399 3.601 13 O -0.481 6.481 14 N -0.376 5.376 15 C 0.115 3.885 16 C -0.578 4.578 17 H 0.096 0.904 18 C -0.126 4.126 19 N -0.532 5.532 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.184 1.184 24 H 0.117 0.883 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.153 0.847 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.227 0.773 37 H 0.040 0.960 38 H 0.036 0.964 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.506 4.448 18.118 23.032 hybrid contribution -0.046 0.463 -0.319 0.564 sum -13.552 4.911 17.799 22.904 Atomic orbital electron populations 1.23023 0.78785 1.03775 1.01151 1.86082 1.20943 1.26845 1.88613 1.18837 0.91699 0.84119 0.96113 1.21150 0.99691 0.92486 1.10116 1.20912 0.94712 0.96825 0.97603 1.21082 0.93860 0.98549 1.04399 1.21094 1.00613 0.90852 0.94724 1.19738 0.90647 0.96882 1.06243 1.19931 0.99652 0.91459 0.82823 1.47007 1.28499 1.47931 1.13611 1.21609 0.91334 0.92128 1.00242 1.16055 0.81481 0.81246 0.81351 1.90819 1.41912 1.39109 1.76310 1.45532 1.32322 1.48399 1.11390 1.19341 0.85279 0.95753 0.88106 1.21101 1.13771 1.27824 0.95141 0.90401 1.24774 0.97597 0.95540 0.94684 1.69881 1.37063 1.42601 1.03673 0.86812 0.82809 0.82046 0.78003 1.19861 1.20990 1.18428 0.88319 0.92934 0.92778 0.85790 0.86129 0.85999 0.84739 0.89259 0.90007 0.93345 0.91636 0.91194 0.77314 0.96020 0.96420 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.42 8.52 -19.42 -0.17 -3.59 16 3 C 0.14 1.74 6.66 -39.22 -0.26 1.48 16 4 C -0.22 -2.41 9.04 -39.43 -0.36 -2.77 16 5 C -0.08 -0.91 10.04 -39.60 -0.40 -1.31 16 6 C -0.16 -1.98 10.04 -39.56 -0.40 -2.37 16 7 C -0.05 -0.77 9.67 -39.61 -0.38 -1.15 16 8 C -0.13 -1.88 5.47 -104.48 -0.57 -2.45 16 9 C 0.18 2.64 5.25 -5.20 -0.03 2.61 16 10 N -0.63 -10.35 2.86 -188.75 -0.54 -10.89 16 11 C 0.09 1.18 9.17 59.84 0.55 1.73 16 12 C 0.70 14.66 8.28 -86.91 -0.72 13.94 16 13 O -0.60 -14.45 15.92 5.29 0.08 -14.36 16 14 N -0.72 -15.89 5.41 -66.41 -0.36 -16.25 16 15 C 0.24 6.14 4.50 -5.19 -0.02 6.11 16 16 C -0.54 -15.25 9.83 -34.44 -0.34 -15.59 16 17 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 18 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 19 N -0.89 -26.98 13.96 55.43 0.77 -26.20 16 20 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 24 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 27 H 0.12 1.08 6.30 -52.49 -0.33 0.75 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 30 H 0.13 1.98 8.04 -52.49 -0.42 1.56 16 31 H 0.09 1.35 7.28 -51.93 -0.38 0.97 16 32 H 0.08 0.98 7.61 -51.93 -0.39 0.59 16 33 H 0.05 0.63 8.02 -51.93 -0.42 0.21 16 34 H 0.07 0.85 6.36 -51.93 -0.33 0.52 16 35 H 0.07 0.75 7.89 -51.93 -0.41 0.34 16 36 H 0.39 7.75 6.05 -40.82 -0.25 7.50 16 37 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 38 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 326.17 15.07 4.92 4.92 Total: -1.00 -33.97 326.17 -7.33 -41.31 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.34 Total: 4.25 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.03 Total: 3.56 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.13 Total: -53.34 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.08 Total: -17.95 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.97 -7.33 -41.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426416634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.227 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds