Wall clock time and date at job start Tue Mar 31 2020 01:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47607 * 260.00607 * 9 8 7 11 11 C 1.46494 * 119.99742 * 270.00170 * 10 9 8 12 12 C 1.34778 * 119.99464 * 89.99879 * 10 9 8 13 13 O 1.21584 * 120.00471 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99060 * 180.02562 * 12 10 9 15 15 C 1.46506 * 119.99769 * 179.97438 * 14 12 10 16 16 C 1.50696 * 109.47414 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00313 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00389 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99592 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47342 * 90.00598 * 20 18 16 22 22 H 1.48506 * 109.46640 * 210.00436 * 20 18 16 23 23 H 1.48496 * 109.47272 * 329.99871 * 20 18 16 24 24 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 26 26 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 27 27 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 28 28 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 29 29 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 30 30 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 31 31 H 1.09001 * 109.47053 * 20.00832 * 9 8 7 32 32 H 1.09002 * 109.47103 * 140.00310 * 9 8 7 33 33 H 1.08997 * 109.47373 * 90.00403 * 11 10 9 34 34 H 1.09007 * 109.47105 * 209.99919 * 11 10 9 35 35 H 1.08995 * 109.47320 * 329.99475 * 11 10 9 36 36 H 0.96996 * 120.00786 * 0.02562 * 14 12 10 37 37 H 1.09003 * 109.46767 * 300.00405 * 15 14 12 38 38 H 1.09006 * 109.46801 * 59.99710 * 15 14 12 39 39 H 0.96993 * 120.00002 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 7 4.3189 -0.5187 -1.3602 11 6 3.3047 -1.4710 -1.8190 12 6 5.3120 -0.1401 -2.1890 13 8 6.1539 0.6500 -1.8080 14 7 5.3716 -0.6374 -3.4403 15 6 6.4506 -0.2255 -4.3416 16 6 6.2888 -0.9198 -5.6693 17 1 5.4648 -1.6001 -5.8259 18 6 7.1932 -0.6872 -6.6837 19 7 7.0522 -1.2934 -7.8422 20 14 8.6188 0.4890 -6.4123 21 1 9.7851 -0.2610 -5.8810 22 1 8.9864 1.1270 -7.7020 23 1 8.2182 1.5362 -5.4386 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2128 2.3203 -0.0010 28 1 1.3339 4.5114 0.0026 29 1 3.7920 4.6381 -0.0024 30 1 5.1344 2.5754 -0.0023 31 1 5.2613 0.2452 0.3508 32 1 3.7927 -0.7115 0.6610 33 1 2.4744 -0.9282 -2.2705 34 1 3.7440 -2.1423 -2.5570 35 1 2.9412 -2.0514 -0.9710 36 1 4.6997 -1.2675 -3.7444 37 1 6.4090 0.8537 -4.4888 38 1 7.4120 -0.4958 -3.9046 39 1 7.6882 -1.1295 -8.5559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426416634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:47 Heat of formation + Delta-G solvation = -54.838722 kcal Electronic energy + Delta-G solvation = -21700.380472 eV Core-core repulsion = 18414.958234 eV Total energy + Delta-G solvation = -3285.422238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.48767 -40.66962 -38.29428 -36.70403 -36.11918 -34.45667 -32.77175 -31.02310 -29.88997 -28.47518 -27.78102 -26.57931 -24.02428 -23.02037 -22.52407 -21.06039 -19.53891 -18.86374 -18.31229 -17.49391 -17.19025 -16.99310 -16.57391 -16.33619 -16.14288 -15.35086 -15.25079 -14.94387 -14.76923 -14.56178 -14.34291 -13.95253 -13.72844 -13.49740 -13.31041 -13.04366 -12.88487 -12.73066 -12.69134 -12.18325 -11.95190 -11.92081 -11.80331 -11.63932 -11.18992 -10.90966 -10.07953 -9.86701 -9.46156 -9.08534 -8.39404 -6.46092 0.31207 0.49982 1.33693 1.35185 1.49281 1.87626 2.22587 2.29525 2.41733 2.84128 2.96177 3.26042 3.81392 3.87412 4.10630 4.28023 4.31797 4.35510 4.46538 4.49164 4.56364 4.62342 4.70921 4.76918 4.80540 4.87454 4.92301 5.04758 5.06168 5.24856 5.35716 5.48764 5.57119 5.58728 5.63420 5.86923 5.97506 6.22152 6.48481 6.54882 7.11263 7.20997 7.67100 8.75445 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023048 B = 0.004309 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.551881 B = 6496.608091 C = 6997.730898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.321 6.321 3 C 0.136 3.864 4 C -0.216 4.216 5 C -0.080 4.080 6 C -0.172 4.172 7 C -0.077 4.077 8 C -0.156 4.156 9 C 0.185 3.815 10 N -0.623 5.623 11 C 0.088 3.912 12 C 0.693 3.307 13 O -0.637 6.637 14 N -0.724 5.724 15 C 0.253 3.747 16 C -0.545 4.545 17 H 0.057 0.943 18 C 0.029 3.971 19 N -0.931 5.931 20 Si 0.937 3.063 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.263 1.263 24 H 0.120 0.880 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.402 0.598 37 H 0.007 0.993 38 H 0.009 0.991 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.065 4.533 19.178 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.235 6.235 3 C 0.089 3.911 4 C -0.235 4.235 5 C -0.098 4.098 6 C -0.190 4.190 7 C -0.096 4.096 8 C -0.158 4.158 9 C 0.062 3.938 10 N -0.359 5.359 11 C -0.054 4.054 12 C 0.394 3.606 13 O -0.519 6.519 14 N -0.379 5.379 15 C 0.129 3.871 16 C -0.583 4.583 17 H 0.076 0.924 18 C -0.171 4.171 19 N -0.569 5.569 20 Si 0.761 3.239 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.187 1.187 24 H 0.138 0.862 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.170 0.830 28 H 0.169 0.831 29 H 0.153 0.847 30 H 0.133 0.867 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.239 0.761 37 H 0.025 0.975 38 H 0.027 0.973 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.312 4.828 19.245 25.062 hybrid contribution 0.331 0.287 -0.606 0.748 sum -14.981 5.115 18.639 24.454 Atomic orbital electron populations 1.23323 0.76687 1.05548 1.01981 1.86055 1.23051 1.26060 1.88309 1.18892 0.91258 0.85320 0.95588 1.21519 1.01139 0.91932 1.08902 1.21300 0.94294 0.98181 0.96014 1.21307 0.94767 0.98468 1.04475 1.21097 1.00005 0.92111 0.96384 1.19713 0.91681 0.96353 1.08079 1.20056 0.99280 0.92634 0.81783 1.47063 1.27587 1.47661 1.13596 1.21808 0.90408 0.91663 1.01548 1.16206 0.82180 0.80889 0.81276 1.90790 1.43626 1.40597 1.76915 1.45290 1.31940 1.49060 1.11635 1.18926 0.86132 0.94443 0.87645 1.21253 1.13212 1.27524 0.96350 0.92437 1.25555 1.00138 0.97057 0.94382 1.69974 1.38362 1.44029 1.04576 0.85859 0.79807 0.79938 0.78295 1.18839 1.19614 1.18726 0.86229 0.91541 0.92407 0.82981 0.83136 0.84689 0.86743 0.90969 0.87361 0.92932 0.91714 0.88175 0.76132 0.97529 0.97308 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.32 -6.15 8.52 -92.39 -0.79 -6.94 16 3 C 0.14 3.16 6.66 22.51 0.15 3.31 16 4 C -0.22 -4.24 9.04 22.37 0.20 -4.03 16 5 C -0.08 -1.58 10.04 22.26 0.22 -1.35 16 6 C -0.17 -4.11 10.04 22.28 0.22 -3.88 16 7 C -0.08 -2.23 9.67 22.25 0.22 -2.02 16 8 C -0.16 -4.35 5.47 -19.77 -0.11 -4.45 16 9 C 0.19 5.21 5.25 85.63 0.45 5.66 16 10 N -0.62 -19.98 2.86 -869.33 -2.48 -22.46 16 11 C 0.09 2.14 9.17 127.77 1.17 3.31 16 12 C 0.69 29.39 8.28 179.05 1.48 30.87 16 13 O -0.64 -31.34 15.92 -3.98 -0.06 -31.41 16 14 N -0.72 -32.10 5.41 -482.28 -2.61 -34.71 16 15 C 0.25 13.19 4.50 85.63 0.38 13.57 16 16 C -0.55 -31.20 9.83 25.60 0.25 -30.95 16 17 H 0.06 3.45 7.84 -2.91 -0.02 3.42 16 18 C 0.03 1.68 5.47 84.65 0.46 2.14 16 19 N -0.93 -56.41 13.96 21.45 0.30 -56.11 16 20 Si 0.94 45.26 27.47 68.60 1.88 47.15 16 21 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.26 -12.75 6.54 99.48 0.65 -12.10 16 24 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 26 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 27 H 0.15 2.04 6.30 -2.91 -0.02 2.02 16 28 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 29 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 30 H 0.11 3.64 8.04 -2.91 -0.02 3.62 16 31 H 0.07 2.26 7.28 -2.39 -0.02 2.24 16 32 H 0.11 2.42 7.61 -2.39 -0.02 2.40 16 33 H 0.05 1.26 8.02 -2.39 -0.02 1.24 16 34 H 0.06 1.59 6.36 -2.38 -0.02 1.58 16 35 H 0.10 1.85 7.89 -2.39 -0.02 1.83 16 36 H 0.40 15.92 6.05 -92.71 -0.56 15.36 16 37 H 0.01 0.37 7.20 -2.39 -0.02 0.36 16 38 H 0.01 0.48 7.57 -2.38 -0.02 0.47 16 39 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -73.60 326.17 2.90 -70.70 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.44 Total: 20.29 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 6.22 Total: 13.49 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -4.80 Total: -113.28 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.85 Total: -38.35 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Total: -73.60 2.90 -70.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426416634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.858 kcal (2) G-P(sol) polarization free energy of solvation -73.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds