Wall clock time and date at job start Tue Mar 31 2020 00:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47006 * 2 1 4 4 C 1.35899 * 116.99930 * 180.02562 * 3 2 1 5 5 C 1.38747 * 120.05586 * 359.97438 * 4 3 2 6 6 C 1.38125 * 119.94590 * 180.02562 * 5 4 3 7 7 C 1.38289 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11362 * 0.02562 * 7 6 5 9 9 C 1.38163 * 120.05438 * 359.97438 * 8 7 6 10 10 C 1.50708 * 120.02715 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.47357 * 260.02510 * 10 9 8 12 12 C 1.34772 * 120.00011 * 180.02562 * 11 10 9 13 13 O 1.21583 * 120.00232 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99898 * 179.97438 * 12 11 10 15 15 C 1.46495 * 119.99855 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.46967 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00279 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99857 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00032 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00095 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47061 * 59.99745 * 20 18 16 22 22 H 1.48499 * 109.47574 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46934 * 300.00104 * 20 18 16 24 24 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47487 * 299.99875 * 1 2 3 26 26 H 1.09003 * 109.46669 * 60.00618 * 1 2 3 27 27 H 1.08998 * 109.47474 * 239.99645 * 2 1 3 28 28 H 1.08995 * 109.46823 * 119.99665 * 2 1 3 29 29 H 1.08000 * 120.03046 * 0.02562 * 5 4 3 30 30 H 1.07993 * 119.97844 * 179.72247 * 6 5 4 31 31 H 1.08004 * 119.94567 * 179.97438 * 7 6 5 32 32 H 1.08001 * 119.97538 * 179.97438 * 8 7 6 33 33 H 1.09002 * 109.47162 * 20.02710 * 10 9 8 34 34 H 1.09005 * 109.46612 * 140.02285 * 10 9 8 35 35 H 0.97001 * 119.99694 * 359.97438 * 11 10 9 36 36 H 0.97001 * 119.99807 * 359.97438 * 14 12 11 37 37 H 1.09000 * 109.47558 * 300.00352 * 15 14 12 38 38 H 1.09002 * 109.47314 * 60.00361 * 15 14 12 39 39 H 0.97007 * 119.99894 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4259 -0.0005 6 6 5.5689 0.6095 -0.0005 7 6 6.0961 1.8879 -0.0011 8 6 5.2551 2.9851 -0.0011 9 6 3.8850 2.8066 -0.0011 10 6 2.9687 4.0031 -0.0005 11 7 2.4819 4.2448 1.3599 12 6 1.6420 5.2705 1.6028 13 8 1.2886 5.9954 0.6929 14 7 1.1937 5.4925 2.8543 15 6 0.2812 6.6077 3.1184 16 6 -0.0669 6.6355 4.5845 17 1 0.3502 5.8967 5.2527 18 6 -0.9179 7.6042 5.0726 19 7 -1.4263 8.5037 4.2588 20 14 -1.3489 7.6392 6.8899 21 1 -0.1096 7.8144 7.6892 22 1 -2.2749 8.7688 7.1575 23 1 -2.0050 6.3618 7.2677 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7886 -0.5727 -0.0005 30 1 6.2281 -0.2459 0.0040 31 1 7.1668 2.0295 -0.0007 32 1 5.6692 3.9825 -0.0012 33 1 3.5143 4.8788 -0.3522 34 1 2.1225 3.8130 -0.6609 35 1 2.7635 3.6662 2.0857 36 1 1.4753 4.9139 3.5801 37 1 0.7632 7.5452 2.8412 38 1 -0.6286 6.4796 2.5318 39 1 -2.0254 9.1850 4.6023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426428157.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:29 Heat of formation + Delta-G solvation = -52.593159 kcal Electronic energy + Delta-G solvation = -20917.544267 eV Core-core repulsion = 17632.219404 eV Total energy + Delta-G solvation = -3285.324863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51329 -38.94207 -37.72006 -34.75514 -33.88522 -32.33391 -32.03060 -31.14457 -29.73786 -27.30323 -25.50609 -24.25334 -22.49714 -21.85088 -21.30986 -20.03437 -18.41485 -17.94019 -16.36764 -16.30037 -16.17915 -15.65987 -15.37425 -14.73761 -14.58790 -14.51862 -13.74479 -13.65061 -13.52511 -13.03877 -12.81294 -12.77672 -12.63772 -12.16206 -11.90780 -11.86371 -11.74000 -11.44151 -10.96624 -10.94387 -10.87969 -10.81776 -10.24352 -9.43894 -9.31621 -9.05738 -8.67490 -8.54878 -8.34811 -7.63989 -6.09303 -4.15506 1.04059 1.23277 3.00541 3.29650 3.32940 3.34904 3.39003 3.83402 4.10048 4.38703 4.49852 4.58696 4.69055 4.77968 4.85240 4.98223 5.06984 5.13023 5.26452 5.28388 5.30970 5.53613 5.60260 5.63753 5.72674 5.90190 6.04825 6.10913 6.25545 6.36271 6.58831 7.00406 7.21178 7.26056 7.61171 7.65538 7.66067 8.00612 8.14019 8.84327 9.06187 9.43078 9.58273 11.00985 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.003492 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.392743 B = 8017.179034 C = 8534.273421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.055 3.945 3 O -0.304 6.304 4 C 0.148 3.852 5 C -0.215 4.215 6 C -0.077 4.077 7 C -0.163 4.163 8 C -0.062 4.062 9 C -0.135 4.135 10 C 0.193 3.807 11 N -0.749 5.749 12 C 0.694 3.306 13 O -0.603 6.603 14 N -0.731 5.731 15 C 0.268 3.732 16 C -0.541 4.541 17 H 0.061 0.939 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.904 3.096 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.390 0.610 36 H 0.385 0.615 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.638 -19.995 -8.259 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 O -0.217 6.217 4 C 0.102 3.898 5 C -0.234 4.234 6 C -0.095 4.095 7 C -0.181 4.181 8 C -0.080 4.080 9 C -0.137 4.137 10 C 0.069 3.931 11 N -0.406 5.406 12 C 0.394 3.606 13 O -0.482 6.482 14 N -0.383 5.383 15 C 0.146 3.854 16 C -0.579 4.579 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.524 5.524 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.223 0.777 36 H 0.217 0.783 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.956 -18.954 -9.108 24.190 hybrid contribution 0.121 -0.820 1.644 1.842 sum 12.077 -19.775 -7.464 24.343 Atomic orbital electron populations 1.21780 0.92499 1.02699 1.04114 1.22798 0.96201 0.81924 1.01063 1.86209 1.18492 1.29087 1.87878 1.18885 0.82673 0.93443 0.94828 1.21231 0.94422 0.97938 1.09764 1.20955 0.94269 0.97352 0.96911 1.21051 0.99910 0.92385 1.04735 1.21010 0.91556 0.99513 0.95948 1.19394 0.94258 0.92288 1.07725 1.19681 0.95751 0.93321 0.84386 1.45119 1.52226 1.33513 1.09747 1.16131 0.79255 0.80936 0.84287 1.90861 1.63175 1.49986 1.44221 1.45689 1.51079 1.35142 1.06367 1.18950 0.87548 0.83172 0.95690 1.21207 1.29262 1.14437 0.93026 0.92050 1.24942 0.95590 0.95132 0.98372 1.69977 1.31308 1.16034 1.35052 0.86480 0.78327 0.77649 0.84445 1.20115 1.21106 1.20137 0.90486 0.91117 0.91381 0.92223 0.92102 0.85527 0.85905 0.85806 0.85004 0.91324 0.90970 0.77732 0.78282 0.95800 0.95806 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.91 16 2 C 0.06 0.49 5.46 37.16 0.20 0.69 16 3 O -0.30 -3.77 9.37 -19.42 -0.18 -3.95 16 4 C 0.15 1.74 6.66 -39.22 -0.26 1.48 16 5 C -0.21 -2.04 9.04 -39.43 -0.36 -2.39 16 6 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16 7 C -0.16 -1.43 10.04 -39.56 -0.40 -1.83 16 8 C -0.06 -0.63 9.67 -39.61 -0.38 -1.02 16 9 C -0.14 -1.65 5.26 -104.47 -0.55 -2.20 16 10 C 0.19 2.90 5.46 -5.19 -0.03 2.87 16 11 N -0.75 -12.54 5.55 -66.41 -0.37 -12.91 16 12 C 0.69 15.33 8.57 -86.92 -0.74 14.59 16 13 O -0.60 -15.91 16.34 5.29 0.09 -15.82 16 14 N -0.73 -16.54 5.55 -66.42 -0.37 -16.91 16 15 C 0.27 7.43 5.43 -5.19 -0.03 7.41 16 16 C -0.54 -15.13 9.28 -34.44 -0.32 -15.45 16 17 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 20 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 28 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 29 H 0.13 0.95 6.30 -52.49 -0.33 0.61 16 30 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.13 1.19 8.04 -52.49 -0.42 0.77 16 33 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 34 H 0.07 1.20 7.85 -51.93 -0.41 0.79 16 35 H 0.39 5.62 8.48 -40.82 -0.35 5.27 16 36 H 0.39 7.53 8.34 -40.82 -0.34 7.19 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -34.39 336.67 -8.57 -42.97 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.55 Total: 7.43 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -2.98 Total: 3.87 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.00 Total: -55.78 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.10 Total: -19.78 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.39 -8.57 -42.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426428157.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.628 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds