Wall clock time and date at job start Tue Mar 31 2020 00:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47006 * 2 1 4 4 C 1.35899 * 116.99930 * 180.02562 * 3 2 1 5 5 C 1.38747 * 120.05586 * 359.97438 * 4 3 2 6 6 C 1.38125 * 119.94590 * 180.02562 * 5 4 3 7 7 C 1.38289 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11362 * 0.02562 * 7 6 5 9 9 C 1.38163 * 120.05438 * 359.97438 * 8 7 6 10 10 C 1.50708 * 120.02715 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.47357 * 260.02510 * 10 9 8 12 12 C 1.34772 * 120.00011 * 180.02562 * 11 10 9 13 13 O 1.21583 * 120.00232 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99898 * 179.97438 * 12 11 10 15 15 C 1.46495 * 119.99855 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.46967 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00279 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99857 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00032 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00095 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47061 * 59.99745 * 20 18 16 22 22 H 1.48499 * 109.47574 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46934 * 300.00104 * 20 18 16 24 24 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47487 * 299.99875 * 1 2 3 26 26 H 1.09003 * 109.46669 * 60.00618 * 1 2 3 27 27 H 1.08998 * 109.47474 * 239.99645 * 2 1 3 28 28 H 1.08995 * 109.46823 * 119.99665 * 2 1 3 29 29 H 1.08000 * 120.03046 * 0.02562 * 5 4 3 30 30 H 1.07993 * 119.97844 * 179.72247 * 6 5 4 31 31 H 1.08004 * 119.94567 * 179.97438 * 7 6 5 32 32 H 1.08001 * 119.97538 * 179.97438 * 8 7 6 33 33 H 1.09002 * 109.47162 * 20.02710 * 10 9 8 34 34 H 1.09005 * 109.46612 * 140.02285 * 10 9 8 35 35 H 0.97001 * 119.99694 * 359.97438 * 11 10 9 36 36 H 0.97001 * 119.99807 * 359.97438 * 14 12 11 37 37 H 1.09000 * 109.47558 * 300.00352 * 15 14 12 38 38 H 1.09002 * 109.47314 * 60.00361 * 15 14 12 39 39 H 0.97007 * 119.99894 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4259 -0.0005 6 6 5.5689 0.6095 -0.0005 7 6 6.0961 1.8879 -0.0011 8 6 5.2551 2.9851 -0.0011 9 6 3.8850 2.8066 -0.0011 10 6 2.9687 4.0031 -0.0005 11 7 2.4819 4.2448 1.3599 12 6 1.6420 5.2705 1.6028 13 8 1.2886 5.9954 0.6929 14 7 1.1937 5.4925 2.8543 15 6 0.2812 6.6077 3.1184 16 6 -0.0669 6.6355 4.5845 17 1 0.3502 5.8967 5.2527 18 6 -0.9179 7.6042 5.0726 19 7 -1.4263 8.5037 4.2588 20 14 -1.3489 7.6392 6.8899 21 1 -0.1096 7.8144 7.6892 22 1 -2.2749 8.7688 7.1575 23 1 -2.0050 6.3618 7.2677 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7886 -0.5727 -0.0005 30 1 6.2281 -0.2459 0.0040 31 1 7.1668 2.0295 -0.0007 32 1 5.6692 3.9825 -0.0012 33 1 3.5143 4.8788 -0.3522 34 1 2.1225 3.8130 -0.6609 35 1 2.7635 3.6662 2.0857 36 1 1.4753 4.9139 3.5801 37 1 0.7632 7.5452 2.8412 38 1 -0.6286 6.4796 2.5318 39 1 -2.0254 9.1850 4.6023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426428157.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:27 Heat of formation + Delta-G solvation = -77.332056 kcal Electronic energy + Delta-G solvation = -20918.617026 eV Core-core repulsion = 17632.219404 eV Total energy + Delta-G solvation = -3286.397622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.40731 -40.64612 -38.52902 -36.36735 -35.75362 -34.34854 -32.88875 -32.15434 -30.55868 -29.24387 -26.84566 -24.98023 -24.50003 -22.64016 -22.20578 -21.86296 -19.87684 -19.09065 -18.07222 -17.46234 -17.14139 -16.99907 -16.53595 -16.34904 -16.31738 -15.43409 -15.13437 -14.96171 -14.69543 -14.25018 -14.19349 -14.02411 -13.79372 -13.46426 -13.39667 -12.93634 -12.88726 -12.66742 -12.61376 -12.33781 -12.22200 -11.68428 -11.64941 -11.49055 -11.29956 -10.78456 -10.26890 -9.90935 -9.57004 -9.14483 -8.27033 -6.43905 0.25089 0.48478 1.43731 1.48721 1.56768 1.97332 2.25849 2.28343 2.40978 2.84113 3.07475 3.61878 3.64955 3.84695 4.01924 4.04777 4.21984 4.30580 4.36449 4.38841 4.56466 4.65541 4.72064 4.90822 4.91213 5.03068 5.09124 5.19750 5.28034 5.38097 5.47520 5.49457 5.53203 5.59187 5.69100 5.85992 5.88010 6.26454 6.48602 6.67442 7.25047 7.31525 7.73057 8.85300 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.003492 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.392743 B = 8017.179034 C = 8534.273421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.334 6.334 4 C 0.133 3.867 5 C -0.215 4.215 6 C -0.069 4.069 7 C -0.161 4.161 8 C -0.066 4.066 9 C -0.156 4.156 10 C 0.197 3.803 11 N -0.724 5.724 12 C 0.692 3.308 13 O -0.650 6.650 14 N -0.723 5.723 15 C 0.286 3.714 16 C -0.556 4.556 17 H 0.083 0.917 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.988 3.012 21 H -0.262 1.262 22 H -0.284 1.284 23 H -0.262 1.262 24 H 0.104 0.896 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.405 0.595 36 H 0.403 0.597 37 H -0.014 1.014 38 H -0.016 1.016 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.534 -22.753 -6.658 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.248 6.248 4 C 0.087 3.913 5 C -0.234 4.234 6 C -0.087 4.087 7 C -0.179 4.179 8 C -0.085 4.085 9 C -0.157 4.157 10 C 0.073 3.927 11 N -0.380 5.380 12 C 0.392 3.608 13 O -0.533 6.533 14 N -0.377 5.377 15 C 0.163 3.837 16 C -0.594 4.594 17 H 0.101 0.899 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.811 3.189 21 H -0.186 1.186 22 H -0.210 1.210 23 H -0.187 1.187 24 H 0.123 0.877 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.166 0.834 30 H 0.173 0.827 31 H 0.168 0.832 32 H 0.157 0.843 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.240 0.760 36 H 0.238 0.762 37 H 0.004 0.996 38 H 0.002 0.998 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.909 -21.793 -7.501 26.919 hybrid contribution -0.401 -0.045 1.038 1.114 sum 13.508 -21.838 -6.463 26.479 Atomic orbital electron populations 1.21817 0.92712 1.04004 1.02513 1.23026 0.96082 0.80811 1.02602 1.86174 1.19222 1.31254 1.88178 1.19071 0.82799 0.93922 0.95538 1.21505 0.94743 0.98147 1.08956 1.21390 0.94242 0.98315 0.94796 1.21380 1.01043 0.91988 1.03485 1.21165 0.90864 1.00723 0.95736 1.19192 0.94528 0.91271 1.10747 1.19668 0.95550 0.94920 0.82571 1.44940 1.50161 1.31636 1.11261 1.16302 0.79575 0.81546 0.83387 1.90824 1.64944 1.52009 1.45543 1.45296 1.50591 1.34404 1.07399 1.18408 0.86384 0.83181 0.95756 1.21568 1.29665 1.15235 0.92947 0.89901 1.26087 0.95067 0.94304 1.04132 1.70148 1.32016 1.16922 1.37887 0.85168 0.78445 0.78067 0.77268 1.18605 1.20968 1.18678 0.87725 0.93023 0.92624 0.90431 0.90598 0.83397 0.82718 0.83229 0.84331 0.91683 0.93221 0.75951 0.76176 0.99609 0.99804 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 10.28 71.98 0.74 -1.78 16 2 C 0.05 0.80 5.46 71.98 0.39 1.19 16 3 O -0.33 -8.25 9.37 -92.41 -0.87 -9.12 16 4 C 0.13 2.98 6.66 22.50 0.15 3.13 16 5 C -0.21 -3.46 9.04 22.36 0.20 -3.26 16 6 C -0.07 -0.91 10.04 22.25 0.22 -0.69 16 7 C -0.16 -2.31 10.04 22.28 0.22 -2.09 16 8 C -0.07 -1.26 9.67 22.25 0.22 -1.05 16 9 C -0.16 -3.74 5.26 -19.77 -0.10 -3.85 16 10 C 0.20 6.12 5.46 85.64 0.47 6.59 16 11 N -0.72 -24.71 5.55 -482.29 -2.68 -27.38 16 12 C 0.69 31.74 8.57 179.05 1.53 33.27 16 13 O -0.65 -36.23 16.34 -3.98 -0.07 -36.30 16 14 N -0.72 -33.63 5.55 -482.30 -2.68 -36.31 16 15 C 0.29 16.63 5.43 85.63 0.46 17.09 16 16 C -0.56 -31.38 9.28 25.60 0.24 -31.14 16 17 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 18 C 0.00 0.21 5.46 84.65 0.46 0.67 16 19 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 20 Si 0.99 43.15 29.54 68.60 2.03 45.17 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 24 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 0.97 7.66 -2.39 -0.02 0.95 16 28 H 0.08 0.99 7.66 -2.39 -0.02 0.97 16 29 H 0.15 1.67 6.30 -2.91 -0.02 1.65 16 30 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 31 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.14 2.34 8.04 -2.91 -0.02 2.32 16 33 H 0.06 2.05 8.00 -2.39 -0.02 2.03 16 34 H 0.05 1.76 7.85 -2.38 -0.02 1.75 16 35 H 0.41 11.51 8.48 -92.71 -0.79 10.72 16 36 H 0.40 15.67 8.34 -92.71 -0.77 14.90 16 37 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 38 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 39 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -77.95 336.67 0.74 -77.20 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.49 Total: 25.91 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 5.21 Total: 18.09 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -5.07 Total: -120.97 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.93 Total: -45.41 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -77.95 0.74 -77.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426428157.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.128 kcal (2) G-P(sol) polarization free energy of solvation -77.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds