Wall clock time and date at job start Tue Mar 31 2020 01:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35897 * 117.00093 * 2 1 4 4 C 1.38733 * 120.05732 * 180.02562 * 3 2 1 5 5 C 1.38148 * 119.94359 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05375 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94071 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46743 * 90.00230 * 7 6 5 9 9 C 1.46506 * 120.00098 * 90.00098 * 8 7 6 10 10 C 1.34771 * 120.00308 * 269.99953 * 8 7 6 11 11 O 1.21593 * 120.00167 * 359.97438 * 10 8 7 12 12 N 1.34780 * 120.00532 * 180.02562 * 10 8 7 13 13 C 1.46496 * 120.00367 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47414 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99799 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00288 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99934 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00097 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47222 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47007 * 120.00338 * 18 16 14 21 21 H 1.48495 * 109.47202 * 240.00441 * 18 16 14 22 22 C 1.38265 * 120.11561 * 0.25525 * 6 5 4 23 23 C 1.38150 * 120.05175 * 359.44654 * 22 6 5 24 24 H 1.08993 * 109.47393 * 60.00486 * 1 2 3 25 25 H 1.09009 * 109.46947 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47026 * 299.99636 * 1 2 3 27 27 H 1.08003 * 120.02962 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.97074 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47445 * 330.00564 * 7 6 5 30 30 H 1.09000 * 109.47150 * 210.00173 * 7 6 5 31 31 H 1.09001 * 109.47060 * 270.00243 * 9 8 7 32 32 H 1.09004 * 109.47073 * 29.99732 * 9 8 7 33 33 H 1.09000 * 109.47212 * 149.99814 * 9 8 7 34 34 H 0.97000 * 119.99501 * 0.02562 * 12 10 8 35 35 H 1.09004 * 109.47298 * 300.00557 * 13 12 10 36 36 H 1.09000 * 109.47160 * 60.00094 * 13 12 10 37 37 H 0.96991 * 120.00138 * 179.97438 * 17 16 14 38 38 H 1.07992 * 119.97344 * 179.70119 * 22 6 5 39 39 H 1.08001 * 120.02752 * 180.24938 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0185 0.0028 8 7 4.2070 5.4551 -1.3781 9 6 3.1870 6.2494 -2.0674 10 6 5.3485 5.1261 -2.0144 11 8 6.1953 4.4672 -1.4423 12 7 5.5521 5.5281 -3.2846 13 6 6.7933 5.1709 -3.9761 14 6 6.7714 5.7373 -5.3724 15 1 5.9184 6.3069 -5.7108 16 6 7.8407 5.5294 -6.2176 17 7 8.8796 4.8363 -5.8054 18 14 7.8138 6.2321 -7.9481 19 1 6.5415 6.9668 -8.1644 20 1 8.9579 7.1626 -8.1223 21 1 7.9209 5.1261 -8.9332 22 6 1.9210 3.6048 0.0080 23 6 1.2914 2.3751 0.0013 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0209 0.3799 -0.0005 28 1 5.1345 2.5750 0.0000 29 1 4.9442 4.9377 0.5160 30 1 3.3582 5.7457 0.5177 31 1 2.4940 5.5835 -2.5815 32 1 2.6413 6.8502 -1.3398 33 1 3.6668 6.9055 -2.7936 34 1 4.8771 6.0546 -3.7407 35 1 7.6437 5.5802 -3.4308 36 1 6.8820 4.0857 -4.0260 37 1 9.6317 4.6897 -6.4000 38 1 1.3342 4.5113 0.0141 39 1 0.2128 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426434264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:52 Heat of formation + Delta-G solvation = -37.038203 kcal Electronic energy + Delta-G solvation = -21121.831138 eV Core-core repulsion = 17837.180788 eV Total energy + Delta-G solvation = -3284.650350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.24884 -39.38232 -37.57388 -35.03474 -34.16022 -32.36221 -31.14617 -30.79306 -27.96014 -27.15556 -26.73301 -24.87270 -22.64736 -22.40626 -21.14767 -19.24709 -18.23513 -17.83218 -16.32627 -15.94597 -15.90620 -15.86024 -15.74787 -14.77402 -14.60981 -14.03171 -13.85965 -13.54884 -13.43815 -13.10957 -12.96567 -12.65128 -12.36654 -12.15833 -11.92413 -11.77331 -11.54271 -11.49416 -11.11629 -10.90226 -10.88333 -10.75750 -10.26233 -9.34999 -9.31400 -8.94739 -8.69946 -8.41417 -8.11225 -7.68890 -6.12647 -4.18882 1.38112 1.39964 3.16826 3.25734 3.25826 3.33308 3.36644 3.89051 3.97251 4.34446 4.67848 4.79376 4.88172 4.92132 4.94202 5.00698 5.23214 5.23453 5.25389 5.26471 5.41524 5.58864 5.59689 5.75869 5.81730 5.88400 6.10158 6.27389 6.34448 6.68173 6.80170 6.85442 7.17217 7.33218 7.55876 7.58110 7.61621 7.89358 8.05595 8.79672 8.94932 9.36552 9.51602 10.97698 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.003541 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.220733 B = 7906.289211 C = 8272.272467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.154 4.154 5 C -0.050 4.050 6 C -0.138 4.138 7 C 0.179 3.821 8 N -0.638 5.638 9 C 0.084 3.916 10 C 0.696 3.304 11 O -0.597 6.597 12 N -0.729 5.729 13 C 0.266 3.734 14 C -0.540 4.540 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.069 4.069 23 C -0.215 4.215 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.129 0.871 28 H 0.139 0.861 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.386 0.614 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.265 0.735 38 H 0.121 0.879 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.505 -2.381 12.319 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.078 3.922 4 C -0.172 4.172 5 C -0.069 4.069 6 C -0.140 4.140 7 C 0.055 3.945 8 N -0.377 5.377 9 C -0.060 4.060 10 C 0.397 3.603 11 O -0.476 6.476 12 N -0.382 5.382 13 C 0.145 3.855 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.088 4.088 23 C -0.234 4.234 24 H 0.073 0.927 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.157 0.843 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.220 0.780 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.563 -3.108 12.630 21.855 hybrid contribution -0.674 0.678 -1.329 1.637 sum -18.237 -2.430 11.302 21.592 Atomic orbital electron populations 1.23013 0.78717 1.03690 1.01228 1.86066 1.21144 1.27256 1.88885 1.19061 0.92403 0.83980 0.96745 1.20493 0.91219 0.98916 1.06621 1.21143 1.00930 0.90661 0.94124 1.20289 0.93512 0.96329 1.03845 1.20055 1.00715 0.91182 0.82536 1.47106 1.18546 1.57789 1.14262 1.21642 0.91746 0.95007 0.97632 1.16083 0.81483 0.80423 0.82317 1.90835 1.44809 1.44940 1.67006 1.45857 1.23792 1.56959 1.11602 1.18972 0.79808 0.96272 0.90430 1.21260 1.03934 1.35206 0.97473 0.92015 1.24942 0.95109 0.95050 0.98935 1.69989 1.06886 1.38974 1.36423 0.86370 0.78067 0.78780 0.83728 1.19683 1.20828 1.20819 1.20780 0.93883 0.96762 0.97371 1.21124 0.99613 0.92426 1.10218 0.92735 0.88449 0.92817 0.85305 0.84295 0.89103 0.90427 0.93306 0.91528 0.91259 0.78016 0.95768 0.95782 0.92546 0.86112 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.90 10.50 -19.42 -0.20 -4.11 16 3 C 0.12 1.63 6.69 -39.22 -0.26 1.36 16 4 C -0.15 -2.20 9.99 -39.43 -0.39 -2.59 16 5 C -0.05 -0.76 9.69 -39.60 -0.38 -1.14 16 6 C -0.14 -1.88 5.46 -104.60 -0.57 -2.46 16 7 C 0.18 2.40 5.57 -5.19 -0.03 2.37 16 8 N -0.64 -10.05 2.86 -188.73 -0.54 -10.58 16 9 C 0.08 0.98 10.25 59.85 0.61 1.60 16 10 C 0.70 14.71 8.28 -86.92 -0.72 13.99 16 11 O -0.60 -14.70 15.44 5.28 0.08 -14.62 16 12 N -0.73 -16.13 5.41 -66.41 -0.36 -16.49 16 13 C 0.27 7.26 5.43 -5.20 -0.03 7.23 16 14 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 15 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.07 -0.80 9.69 -39.60 -0.38 -1.19 16 23 C -0.22 -2.47 9.04 -39.43 -0.36 -2.83 16 24 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 25 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 27 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 28 H 0.14 2.30 7.57 -52.49 -0.40 1.90 16 29 H 0.09 1.35 7.36 -51.93 -0.38 0.97 16 30 H 0.08 0.78 7.83 -51.93 -0.41 0.37 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.58 7.89 -51.93 -0.41 0.17 16 33 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 34 H 0.39 7.43 6.05 -40.82 -0.25 7.18 16 35 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.10 6.30 -52.49 -0.33 0.77 16 LS Contribution 332.28 15.07 5.01 5.01 Total: -1.00 -33.96 332.28 -7.61 -41.57 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.37 Total: 4.83 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -1.94 Total: 4.00 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.16 Total: -52.74 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.12 Total: -18.72 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.96 -7.61 -41.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426434264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.535 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds