Wall clock time and date at job start Tue Mar 31 2020 01:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35897 * 117.00093 * 2 1 4 4 C 1.38733 * 120.05732 * 180.02562 * 3 2 1 5 5 C 1.38148 * 119.94359 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05375 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94071 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46743 * 90.00230 * 7 6 5 9 9 C 1.46506 * 120.00098 * 90.00098 * 8 7 6 10 10 C 1.34771 * 120.00308 * 269.99953 * 8 7 6 11 11 O 1.21593 * 120.00167 * 359.97438 * 10 8 7 12 12 N 1.34780 * 120.00532 * 180.02562 * 10 8 7 13 13 C 1.46496 * 120.00367 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47414 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99799 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00288 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99934 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00097 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47222 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47007 * 120.00338 * 18 16 14 21 21 H 1.48495 * 109.47202 * 240.00441 * 18 16 14 22 22 C 1.38265 * 120.11561 * 0.25525 * 6 5 4 23 23 C 1.38150 * 120.05175 * 359.44654 * 22 6 5 24 24 H 1.08993 * 109.47393 * 60.00486 * 1 2 3 25 25 H 1.09009 * 109.46947 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47026 * 299.99636 * 1 2 3 27 27 H 1.08003 * 120.02962 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.97074 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47445 * 330.00564 * 7 6 5 30 30 H 1.09000 * 109.47150 * 210.00173 * 7 6 5 31 31 H 1.09001 * 109.47060 * 270.00243 * 9 8 7 32 32 H 1.09004 * 109.47073 * 29.99732 * 9 8 7 33 33 H 1.09000 * 109.47212 * 149.99814 * 9 8 7 34 34 H 0.97000 * 119.99501 * 0.02562 * 12 10 8 35 35 H 1.09004 * 109.47298 * 300.00557 * 13 12 10 36 36 H 1.09000 * 109.47160 * 60.00094 * 13 12 10 37 37 H 0.96991 * 120.00138 * 179.97438 * 17 16 14 38 38 H 1.07992 * 119.97344 * 179.70119 * 22 6 5 39 39 H 1.08001 * 120.02752 * 180.24938 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0185 0.0028 8 7 4.2070 5.4551 -1.3781 9 6 3.1870 6.2494 -2.0674 10 6 5.3485 5.1261 -2.0144 11 8 6.1953 4.4672 -1.4423 12 7 5.5521 5.5281 -3.2846 13 6 6.7933 5.1709 -3.9761 14 6 6.7714 5.7373 -5.3724 15 1 5.9184 6.3069 -5.7108 16 6 7.8407 5.5294 -6.2176 17 7 8.8796 4.8363 -5.8054 18 14 7.8138 6.2321 -7.9481 19 1 6.5415 6.9668 -8.1644 20 1 8.9579 7.1626 -8.1223 21 1 7.9209 5.1261 -8.9332 22 6 1.9210 3.6048 0.0080 23 6 1.2914 2.3751 0.0013 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0209 0.3799 -0.0005 28 1 5.1345 2.5750 0.0000 29 1 4.9442 4.9377 0.5160 30 1 3.3582 5.7457 0.5177 31 1 2.4940 5.5835 -2.5815 32 1 2.6413 6.8502 -1.3398 33 1 3.6668 6.9055 -2.7936 34 1 4.8771 6.0546 -3.7407 35 1 7.6437 5.5802 -3.4308 36 1 6.8820 4.0857 -4.0260 37 1 9.6317 4.6897 -6.4000 38 1 1.3342 4.5113 0.0141 39 1 0.2128 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426434264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:50 Heat of formation + Delta-G solvation = -60.402305 kcal Electronic energy + Delta-G solvation = -21122.844281 eV Core-core repulsion = 17837.180788 eV Total energy + Delta-G solvation = -3285.663493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.34580 -40.76534 -38.62043 -36.43400 -36.10015 -34.34739 -32.19029 -31.87379 -29.34282 -28.54283 -27.70652 -26.23402 -24.35820 -23.60022 -22.27708 -20.92663 -19.45980 -19.06826 -17.98766 -17.46609 -17.12925 -17.01801 -16.64288 -16.51519 -15.96858 -15.22774 -15.09551 -14.92816 -14.63452 -14.47502 -14.25461 -14.03067 -13.65363 -13.53303 -13.27032 -12.94236 -12.85456 -12.74413 -12.57850 -12.52175 -12.18511 -11.94967 -11.69290 -11.43594 -11.10040 -10.80603 -9.99328 -9.95827 -9.41391 -9.09711 -8.27951 -6.44596 0.35623 0.39701 1.43342 1.45253 1.58458 1.91371 2.28520 2.37295 2.39345 2.82878 3.06925 3.34625 3.82906 3.93073 4.00091 4.18245 4.34027 4.39935 4.40857 4.44910 4.57156 4.68032 4.73447 4.75309 4.84882 4.93385 5.05426 5.10566 5.27556 5.28622 5.36251 5.47642 5.60176 5.71403 5.75983 5.83807 5.87127 6.15606 6.45333 6.67489 7.23167 7.26471 7.75890 8.84774 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.003541 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.220733 B = 7906.289211 C = 8272.272467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.118 3.882 4 C -0.178 4.178 5 C -0.075 4.075 6 C -0.150 4.150 7 C 0.176 3.824 8 N -0.626 5.626 9 C 0.075 3.925 10 C 0.688 3.312 11 O -0.643 6.643 12 N -0.725 5.725 13 C 0.287 3.713 14 C -0.553 4.553 15 H 0.083 0.917 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.987 3.013 19 H -0.252 1.252 20 H -0.278 1.278 21 H -0.279 1.279 22 C -0.057 4.057 23 C -0.209 4.209 24 H 0.064 0.936 25 H 0.116 0.884 26 H 0.070 0.930 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.128 0.872 31 H 0.059 0.941 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.402 0.598 35 H -0.016 1.016 36 H -0.019 1.019 37 H 0.269 0.731 38 H 0.162 0.838 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.605 -0.458 11.631 25.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.072 3.928 4 C -0.197 4.197 5 C -0.093 4.093 6 C -0.152 4.152 7 C 0.054 3.946 8 N -0.363 5.363 9 C -0.067 4.067 10 C 0.389 3.611 11 O -0.525 6.525 12 N -0.381 5.381 13 C 0.163 3.837 14 C -0.591 4.591 15 H 0.101 0.899 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.810 3.190 19 H -0.175 1.175 20 H -0.204 1.204 21 H -0.205 1.205 22 C -0.075 4.075 23 C -0.227 4.227 24 H 0.083 0.917 25 H 0.135 0.865 26 H 0.089 0.911 27 H 0.140 0.860 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.146 0.854 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.085 0.915 34 H 0.239 0.761 35 H 0.002 0.998 36 H -0.001 1.001 37 H 0.077 0.923 38 H 0.180 0.820 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.757 -1.158 11.974 24.861 hybrid contribution 0.504 -0.007 -1.001 1.120 sum -21.253 -1.165 10.974 23.947 Atomic orbital electron populations 1.23362 0.76219 1.05565 1.02473 1.86045 1.23757 1.26981 1.88681 1.19168 0.91996 0.85266 0.96336 1.20518 0.92574 0.98412 1.08155 1.21015 0.99705 0.92279 0.96341 1.20336 0.94712 0.95388 1.04723 1.20284 1.00532 0.92597 0.81178 1.47135 1.17310 1.57001 1.14888 1.21987 0.90841 0.95103 0.98788 1.16352 0.82802 0.80009 0.81928 1.90808 1.47069 1.46768 1.67876 1.45456 1.22680 1.57710 1.12206 1.18365 0.80889 0.93329 0.91068 1.21617 1.04816 1.35346 0.97333 0.89932 1.26090 0.94391 0.95089 1.04108 1.70157 1.07893 1.40441 1.38514 0.85081 0.78918 0.77973 0.77043 1.17518 1.20355 1.20491 1.21157 0.92763 0.98408 0.95172 1.21522 1.01238 0.91529 1.08444 0.91735 0.86530 0.91115 0.86043 0.87590 0.91747 0.85442 0.92228 0.87047 0.91528 0.76078 0.99762 1.00147 0.92258 0.82048 0.82396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.93 10.50 -92.39 -0.97 -8.90 16 3 C 0.12 3.01 6.69 22.51 0.15 3.16 16 4 C -0.18 -5.39 9.99 22.37 0.22 -5.16 16 5 C -0.07 -2.42 9.69 22.25 0.22 -2.20 16 6 C -0.15 -3.96 5.46 -19.85 -0.11 -4.07 16 7 C 0.18 4.50 5.57 85.63 0.48 4.98 16 8 N -0.63 -18.92 2.86 -869.28 -2.48 -21.41 16 9 C 0.07 1.48 10.25 127.77 1.31 2.79 16 10 C 0.69 30.04 8.28 179.06 1.48 31.52 16 11 O -0.64 -33.99 15.44 -4.01 -0.06 -34.05 16 12 N -0.73 -32.92 5.41 -482.29 -2.61 -35.53 16 13 C 0.29 16.50 5.43 85.63 0.46 16.96 16 14 C -0.55 -30.92 9.28 25.60 0.24 -30.68 16 15 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 16 C 0.00 0.15 5.46 84.65 0.46 0.61 16 17 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 18 Si 0.99 42.93 29.54 68.60 2.03 44.96 16 19 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 22 C -0.06 -1.10 9.69 22.26 0.22 -0.89 16 23 C -0.21 -4.12 9.04 22.37 0.20 -3.91 16 24 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 25 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 27 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 28 H 0.11 4.02 7.57 -2.91 -0.02 4.00 16 29 H 0.06 1.99 7.36 -2.39 -0.02 1.97 16 30 H 0.13 1.99 7.83 -2.39 -0.02 1.97 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 1.27 7.89 -2.38 -0.02 1.25 16 33 H 0.07 1.38 6.36 -2.39 -0.02 1.36 16 34 H 0.40 15.25 6.05 -92.71 -0.56 14.69 16 35 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 36 H -0.02 -1.27 8.14 -2.39 -0.02 -1.28 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 39 H 0.16 1.99 6.30 -2.91 -0.02 1.97 16 Total: -1.00 -80.03 332.28 3.12 -76.90 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.50 Total: 20.71 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 6.44 Total: 14.44 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -4.81 Total: -114.05 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.03 Total: -42.95 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -80.03 3.12 -76.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426434264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.498 kcal (2) G-P(sol) polarization free energy of solvation -80.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds