Wall clock time and date at job start Tue Mar 31 2020 01:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46504 * 119.99757 * 2 1 4 4 C 1.53001 * 109.46908 * 270.00030 * 3 2 1 5 5 O 1.42902 * 109.47386 * 65.00040 * 4 3 2 6 6 C 1.35898 * 116.99694 * 180.02562 * 5 4 3 7 7 C 1.38735 * 120.05254 * 179.97438 * 6 5 4 8 8 C 1.38144 * 119.94607 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.05233 * 0.02562 * 8 7 6 10 10 C 1.38269 * 120.11595 * 359.95530 * 9 8 7 11 11 C 1.38142 * 120.04935 * 0.04230 * 10 9 8 12 12 C 1.34770 * 120.00000 * 179.97438 * 2 1 3 13 13 O 1.21586 * 120.00005 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00360 * 0.02562 * 12 2 1 15 15 C 1.46503 * 120.00142 * 180.02562 * 14 12 2 16 16 C 1.50695 * 109.46760 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00742 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99812 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00117 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99822 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46884 * 90.00055 * 20 18 16 22 22 H 1.48503 * 109.46814 * 209.99795 * 20 18 16 23 23 H 1.48498 * 109.47079 * 330.00021 * 20 18 16 24 24 H 1.09002 * 109.46952 * 90.00230 * 1 2 3 25 25 H 1.08997 * 109.47022 * 210.00303 * 1 2 3 26 26 H 1.09004 * 109.47123 * 330.00246 * 1 2 3 27 27 H 1.08997 * 109.46959 * 150.00039 * 3 2 1 28 28 H 1.09000 * 109.47126 * 29.99686 * 3 2 1 29 29 H 1.08999 * 109.46920 * 304.99793 * 4 3 2 30 30 H 1.08998 * 109.47220 * 185.00164 * 4 3 2 31 31 H 1.08002 * 120.02704 * 359.70561 * 7 6 5 32 32 H 1.08001 * 119.97447 * 179.97438 * 8 7 6 33 33 H 1.08000 * 119.94089 * 179.97438 * 9 8 7 34 34 H 1.07992 * 119.97577 * 180.02562 * 10 9 8 35 35 H 1.08005 * 120.02748 * 179.97438 * 11 10 9 36 36 H 0.96998 * 119.99768 * 359.97438 * 14 12 2 37 37 H 1.09000 * 109.46934 * 299.99459 * 15 14 12 38 38 H 1.08995 * 109.46985 * 59.99293 * 15 14 12 39 39 H 0.97000 * 120.00340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 8 1.2060 1.9935 -2.0815 6 6 1.2554 2.4011 -3.3769 7 6 0.0828 2.6925 -4.0588 8 6 0.1356 3.1072 -5.3754 9 6 1.3557 3.2314 -6.0139 10 6 2.5258 2.9420 -5.3365 11 6 2.4783 2.5270 -4.0197 12 6 2.1389 -1.1671 0.0005 13 8 3.3548 -1.1671 0.0001 14 7 1.4651 -2.3344 0.0005 15 6 2.1977 -3.6031 0.0017 16 6 1.2184 -4.7485 0.0020 17 1 0.1566 -4.5512 0.0019 18 6 1.6780 -6.0484 0.0026 19 7 0.8234 -7.0481 0.0034 20 14 3.5146 -6.3897 0.0021 21 1 4.0017 -6.4794 1.4020 22 1 3.7794 -7.6727 -0.6974 23 1 4.2225 -5.2884 -0.6988 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.1499 1.1385 0.5138 28 1 1.6084 2.0284 0.5138 29 1 2.9643 0.9131 -1.9815 30 1 3.0732 2.6064 -1.4439 31 1 -0.8708 2.5910 -3.5619 32 1 -0.7770 3.3337 -5.9068 33 1 1.3948 3.5553 -7.0434 34 1 3.4776 3.0402 -5.8372 35 1 3.3925 2.3007 -3.4910 36 1 0.4951 -2.3344 0.0005 37 1 2.8249 -3.6612 -0.8879 38 1 2.8237 -3.6603 0.8921 39 1 1.1467 -7.9626 0.0034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426450394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:01 Heat of formation + Delta-G solvation = -34.365663 kcal Electronic energy + Delta-G solvation = -21091.536486 eV Core-core repulsion = 17807.002026 eV Total energy + Delta-G solvation = -3284.534460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.29505 -39.50748 -37.54438 -35.27620 -34.33536 -32.40792 -31.32076 -30.66391 -29.37207 -27.71000 -26.24556 -24.03262 -22.60418 -22.16074 -21.37512 -19.47134 -18.56647 -17.81311 -16.53739 -16.43683 -16.15967 -15.99387 -15.34153 -15.13007 -14.58744 -14.37977 -13.76313 -13.67290 -13.52742 -13.18212 -13.04861 -12.74307 -12.44062 -12.34321 -12.19945 -12.02679 -11.74410 -11.62061 -11.07465 -10.96190 -10.87889 -10.74956 -9.95163 -9.55970 -9.44231 -9.17273 -8.76190 -8.55366 -8.32557 -7.97032 -6.19201 -4.20975 1.17271 1.30384 3.01359 3.17513 3.28887 3.35827 3.44472 3.64054 3.75578 4.35606 4.60658 4.64055 4.72133 4.93298 4.96490 5.02565 5.10443 5.16368 5.21537 5.25862 5.31745 5.44032 5.62156 5.62274 5.75017 5.83140 5.90918 6.15903 6.24728 6.36025 6.61018 6.61722 6.81515 7.13057 7.24932 7.31757 7.39739 7.51054 8.26970 8.67266 8.80999 9.18186 9.42115 10.92811 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021120 B = 0.003591 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.430814 B = 7794.422727 C = 8108.663274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.637 5.637 3 C 0.142 3.858 4 C 0.040 3.960 5 O -0.309 6.309 6 C 0.136 3.864 7 C -0.155 4.155 8 C -0.082 4.082 9 C -0.165 4.165 10 C -0.081 4.081 11 C -0.210 4.210 12 C 0.696 3.304 13 O -0.605 6.605 14 N -0.720 5.720 15 C 0.237 3.763 16 C -0.542 4.542 17 H 0.079 0.921 18 C 0.078 3.922 19 N -0.893 5.893 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.260 1.260 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.393 0.607 37 H 0.023 0.977 38 H 0.018 0.982 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.846 22.541 -6.666 23.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.376 5.376 3 C 0.017 3.983 4 C -0.036 4.036 5 O -0.222 6.222 6 C 0.090 3.910 7 C -0.174 4.174 8 C -0.100 4.100 9 C -0.183 4.183 10 C -0.099 4.099 11 C -0.229 4.229 12 C 0.397 3.603 13 O -0.485 6.485 14 N -0.374 5.374 15 C 0.115 3.885 16 C -0.580 4.580 17 H 0.097 0.903 18 C -0.126 4.126 19 N -0.531 5.531 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.185 1.185 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.229 0.771 37 H 0.040 0.960 38 H 0.036 0.964 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.140 22.234 -6.517 23.169 hybrid contribution 0.600 -0.365 -0.131 0.714 sum 0.460 21.868 -6.648 22.861 Atomic orbital electron populations 1.21660 0.79705 1.02406 1.01828 1.46945 1.06431 1.04569 1.79616 1.21289 0.99082 0.84715 0.93196 1.23471 0.84742 1.00301 0.95100 1.86083 1.33071 1.80896 1.22177 1.19080 0.93999 0.93867 0.84066 1.20457 0.96750 1.05273 0.94921 1.20960 0.98039 0.97410 0.93639 1.21040 0.92554 1.04413 1.00310 1.20956 0.98489 0.96746 0.93684 1.21325 0.97104 1.07525 0.96930 1.16074 0.85415 0.80610 0.78184 1.90844 1.11766 1.86460 1.59402 1.45545 1.10002 1.04953 1.76856 1.19365 0.92906 0.79665 0.96598 1.21089 0.94378 0.89364 1.53156 0.90337 1.24781 0.98158 0.95769 0.93899 1.69881 1.34413 0.99184 1.49582 0.86810 0.85528 0.78274 0.79040 1.19849 1.20931 1.18469 0.92643 0.91423 0.91353 0.87710 0.89845 0.91185 0.91394 0.85277 0.85523 0.86108 0.85951 0.85482 0.77147 0.95955 0.96366 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 9.85 59.85 0.59 1.66 16 2 N -0.64 -9.69 2.84 -187.34 -0.53 -10.22 16 3 C 0.14 1.73 5.86 -4.04 -0.02 1.70 16 4 C 0.04 0.48 5.08 37.16 0.19 0.67 16 5 O -0.31 -3.91 9.69 -19.42 -0.19 -4.10 16 6 C 0.14 1.67 6.69 -39.22 -0.26 1.41 16 7 C -0.16 -1.71 9.99 -39.43 -0.39 -2.10 16 8 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 9 C -0.16 -1.55 10.04 -39.56 -0.40 -1.94 16 10 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 11 C -0.21 -2.40 9.04 -39.44 -0.36 -2.76 16 12 C 0.70 14.09 8.28 -86.92 -0.72 13.37 16 13 O -0.60 -14.18 15.92 5.29 0.08 -14.10 16 14 N -0.72 -15.42 5.41 -66.42 -0.36 -15.78 16 15 C 0.24 6.02 4.50 -5.19 -0.02 6.00 16 16 C -0.54 -15.13 9.83 -34.44 -0.34 -15.47 16 17 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 18 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 19 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 20 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 26 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 27 H 0.10 1.34 7.42 -51.93 -0.39 0.95 16 28 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 29 H 0.07 1.00 7.66 -51.93 -0.40 0.60 16 30 H 0.07 0.64 7.66 -51.93 -0.40 0.24 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.13 1.34 6.30 -52.48 -0.33 1.01 16 36 H 0.39 7.54 6.05 -40.82 -0.25 7.29 16 37 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 38 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -33.66 329.28 -7.93 -41.59 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.37 Total: 4.31 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.63 Total: 2.26 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.12 Total: -51.97 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.10 Total: -18.20 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.66 -7.93 -41.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426450394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.225 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds