Wall clock time and date at job start Tue Mar 31 2020 01:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46504 * 119.99757 * 2 1 4 4 C 1.53001 * 109.46908 * 270.00030 * 3 2 1 5 5 O 1.42902 * 109.47386 * 65.00040 * 4 3 2 6 6 C 1.35898 * 116.99694 * 180.02562 * 5 4 3 7 7 C 1.38735 * 120.05254 * 179.97438 * 6 5 4 8 8 C 1.38144 * 119.94607 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.05233 * 0.02562 * 8 7 6 10 10 C 1.38269 * 120.11595 * 359.95530 * 9 8 7 11 11 C 1.38142 * 120.04935 * 0.04230 * 10 9 8 12 12 C 1.34770 * 120.00000 * 179.97438 * 2 1 3 13 13 O 1.21586 * 120.00005 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00360 * 0.02562 * 12 2 1 15 15 C 1.46503 * 120.00142 * 180.02562 * 14 12 2 16 16 C 1.50695 * 109.46760 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00742 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99812 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00117 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99822 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46884 * 90.00055 * 20 18 16 22 22 H 1.48503 * 109.46814 * 209.99795 * 20 18 16 23 23 H 1.48498 * 109.47079 * 330.00021 * 20 18 16 24 24 H 1.09002 * 109.46952 * 90.00230 * 1 2 3 25 25 H 1.08997 * 109.47022 * 210.00303 * 1 2 3 26 26 H 1.09004 * 109.47123 * 330.00246 * 1 2 3 27 27 H 1.08997 * 109.46959 * 150.00039 * 3 2 1 28 28 H 1.09000 * 109.47126 * 29.99686 * 3 2 1 29 29 H 1.08999 * 109.46920 * 304.99793 * 4 3 2 30 30 H 1.08998 * 109.47220 * 185.00164 * 4 3 2 31 31 H 1.08002 * 120.02704 * 359.70561 * 7 6 5 32 32 H 1.08001 * 119.97447 * 179.97438 * 8 7 6 33 33 H 1.08000 * 119.94089 * 179.97438 * 9 8 7 34 34 H 1.07992 * 119.97577 * 180.02562 * 10 9 8 35 35 H 1.08005 * 120.02748 * 179.97438 * 11 10 9 36 36 H 0.96998 * 119.99768 * 359.97438 * 14 12 2 37 37 H 1.09000 * 109.46934 * 299.99459 * 15 14 12 38 38 H 1.08995 * 109.46985 * 59.99293 * 15 14 12 39 39 H 0.97000 * 120.00340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 8 1.2060 1.9935 -2.0815 6 6 1.2554 2.4011 -3.3769 7 6 0.0828 2.6925 -4.0588 8 6 0.1356 3.1072 -5.3754 9 6 1.3557 3.2314 -6.0139 10 6 2.5258 2.9420 -5.3365 11 6 2.4783 2.5270 -4.0197 12 6 2.1389 -1.1671 0.0005 13 8 3.3548 -1.1671 0.0001 14 7 1.4651 -2.3344 0.0005 15 6 2.1977 -3.6031 0.0017 16 6 1.2184 -4.7485 0.0020 17 1 0.1566 -4.5512 0.0019 18 6 1.6780 -6.0484 0.0026 19 7 0.8234 -7.0481 0.0034 20 14 3.5146 -6.3897 0.0021 21 1 4.0017 -6.4794 1.4020 22 1 3.7794 -7.6727 -0.6974 23 1 4.2225 -5.2884 -0.6988 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.1499 1.1385 0.5138 28 1 1.6084 2.0284 0.5138 29 1 2.9643 0.9131 -1.9815 30 1 3.0732 2.6064 -1.4439 31 1 -0.8708 2.5910 -3.5619 32 1 -0.7770 3.3337 -5.9068 33 1 1.3948 3.5553 -7.0434 34 1 3.4776 3.0402 -5.8372 35 1 3.3925 2.3007 -3.4910 36 1 0.4951 -2.3344 0.0005 37 1 2.8249 -3.6612 -0.8879 38 1 2.8237 -3.6603 0.8921 39 1 1.1467 -7.9626 0.0034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426450394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:00 Heat of formation + Delta-G solvation = -56.612433 kcal Electronic energy + Delta-G solvation = -21092.501178 eV Core-core repulsion = 17807.002026 eV Total energy + Delta-G solvation = -3285.499152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36275 -40.78887 -38.43357 -36.62749 -36.16714 -34.44740 -32.22174 -31.62372 -30.36888 -29.50158 -27.41230 -25.23653 -23.85740 -23.31202 -22.54287 -21.08043 -19.66636 -19.12060 -18.31403 -17.74116 -17.23164 -16.88753 -16.67137 -16.41821 -16.18029 -15.40496 -15.17780 -14.94594 -14.81198 -14.41266 -14.34017 -14.17101 -13.78561 -13.63523 -13.30772 -13.24914 -13.00481 -12.70382 -12.58635 -12.43531 -11.95575 -11.92998 -11.71523 -11.65151 -11.21069 -10.92033 -10.12881 -9.94947 -9.50077 -9.15054 -8.40245 -6.47307 0.39597 0.50640 1.33184 1.34696 1.48414 1.74700 2.10056 2.28270 2.29334 2.85708 2.95125 3.15616 3.82053 3.95500 4.00909 4.06783 4.20630 4.28107 4.34570 4.41127 4.50874 4.59803 4.65677 4.71254 4.77604 4.81573 4.93258 5.04011 5.09259 5.23487 5.37555 5.48886 5.53121 5.55566 5.60518 5.84592 5.93085 6.18491 6.44644 6.53846 7.06661 7.18293 7.60701 8.74566 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021120 B = 0.003591 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.430814 B = 7794.422727 C = 8108.663274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.627 5.627 3 C 0.137 3.863 4 C 0.047 3.953 5 O -0.317 6.317 6 C 0.109 3.891 7 C -0.169 4.169 8 C -0.084 4.084 9 C -0.167 4.167 10 C -0.090 4.090 11 C -0.227 4.227 12 C 0.692 3.308 13 O -0.641 6.641 14 N -0.723 5.723 15 C 0.252 3.748 16 C -0.547 4.547 17 H 0.057 0.943 18 C 0.028 3.972 19 N -0.930 5.930 20 Si 0.939 3.061 21 H -0.263 1.263 22 H -0.272 1.272 23 H -0.262 1.262 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.040 0.960 30 H 0.094 0.906 31 H 0.137 0.863 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.127 0.873 36 H 0.403 0.597 37 H 0.008 0.992 38 H 0.011 0.989 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.763 24.329 -7.245 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.364 5.364 3 C 0.014 3.986 4 C -0.030 4.030 5 O -0.231 6.231 6 C 0.064 3.936 7 C -0.187 4.187 8 C -0.102 4.102 9 C -0.185 4.185 10 C -0.108 4.108 11 C -0.245 4.245 12 C 0.394 3.606 13 O -0.524 6.524 14 N -0.378 5.378 15 C 0.128 3.872 16 C -0.585 4.585 17 H 0.075 0.925 18 C -0.173 4.173 19 N -0.569 5.569 20 Si 0.762 3.238 21 H -0.188 1.188 22 H -0.197 1.197 23 H -0.186 1.186 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.139 0.861 29 H 0.058 0.942 30 H 0.112 0.888 31 H 0.155 0.845 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.145 0.855 36 H 0.240 0.760 37 H 0.026 0.974 38 H 0.029 0.971 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.103 24.076 -7.097 25.101 hybrid contribution 0.471 -0.814 -0.019 0.941 sum 0.369 23.263 -7.116 24.329 Atomic orbital electron populations 1.21861 0.77647 1.04029 1.02315 1.47015 1.07760 1.03865 1.77807 1.21569 0.99310 0.83915 0.93809 1.23353 0.84892 1.00422 0.94298 1.86038 1.33127 1.81284 1.22645 1.19366 0.94885 0.95183 0.84151 1.20724 0.96730 1.05546 0.95730 1.21337 0.99333 0.96378 0.93165 1.21425 0.92203 1.03368 1.01467 1.21283 0.99880 0.96297 0.93305 1.21490 0.96998 1.08234 0.97825 1.16221 0.85059 0.81438 0.77921 1.90809 1.13440 1.87177 1.60938 1.45305 1.10381 1.04443 1.77681 1.18942 0.92197 0.80692 0.95415 1.21259 0.93942 0.90490 1.52785 0.92458 1.25585 1.02587 0.95622 0.93495 1.69978 1.36506 0.99811 1.50624 0.85842 0.80072 0.78323 0.79561 1.18772 1.19676 1.18640 0.92698 0.91649 0.87890 0.88348 0.86146 0.94207 0.88817 0.84526 0.82887 0.83574 0.84065 0.85466 0.76013 0.97437 0.97144 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.89 9.85 127.77 1.26 3.15 16 2 N -0.63 -18.40 2.84 -864.89 -2.45 -20.85 16 3 C 0.14 3.12 5.86 86.38 0.51 3.62 16 4 C 0.05 1.08 5.08 71.98 0.37 1.44 16 5 O -0.32 -7.72 9.69 -92.40 -0.90 -8.62 16 6 C 0.11 2.62 6.69 22.51 0.15 2.77 16 7 C -0.17 -3.50 9.99 22.37 0.22 -3.28 16 8 C -0.08 -1.42 10.04 22.25 0.22 -1.20 16 9 C -0.17 -2.74 10.04 22.28 0.22 -2.52 16 10 C -0.09 -1.67 10.04 22.25 0.22 -1.45 16 11 C -0.23 -5.06 9.04 22.36 0.20 -4.86 16 12 C 0.69 28.00 8.28 179.06 1.48 29.48 16 13 O -0.64 -30.33 15.92 -3.99 -0.06 -30.40 16 14 N -0.72 -31.18 5.41 -482.31 -2.61 -33.79 16 15 C 0.25 12.90 4.50 85.63 0.38 13.29 16 16 C -0.55 -31.00 9.83 25.60 0.25 -30.75 16 17 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 18 C 0.03 1.58 5.47 84.66 0.46 2.04 16 19 N -0.93 -56.17 13.96 21.45 0.30 -55.87 16 20 Si 0.94 44.80 27.47 68.60 1.88 46.68 16 21 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.26 -12.51 6.54 99.48 0.65 -11.86 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.52 6.36 -2.39 -0.02 1.50 16 26 H 0.10 1.65 7.89 -2.39 -0.02 1.63 16 27 H 0.10 2.41 7.42 -2.39 -0.02 2.39 16 28 H 0.12 1.88 7.89 -2.39 -0.02 1.86 16 29 H 0.04 1.15 7.66 -2.39 -0.02 1.14 16 30 H 0.09 1.65 7.66 -2.39 -0.02 1.63 16 31 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.13 2.69 6.30 -2.91 -0.02 2.67 16 36 H 0.40 15.54 6.05 -92.71 -0.56 14.98 16 37 H 0.01 0.42 7.20 -2.39 -0.02 0.40 16 38 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 39 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -72.96 329.28 2.55 -70.41 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.44 Total: 20.69 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 5.96 Total: 11.75 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -4.77 Total: -110.51 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.96 Total: -39.02 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -72.96 2.55 -70.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426450394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.797 kcal (2) G-P(sol) polarization free energy of solvation -72.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds