Wall clock time and date at job start Tue Mar 31 2020 01:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46494 * 119.99903 * 2 1 4 4 C 1.50701 * 109.46822 * 269.99837 * 3 2 1 5 5 C 1.41388 * 126.58380 * 90.00409 * 4 3 2 6 6 C 1.34502 * 106.84266 * 179.97438 * 5 4 3 7 7 O 1.34304 * 108.42452 * 359.97438 * 6 5 4 8 8 C 1.34299 * 109.47579 * 359.77192 * 7 6 5 9 9 C 1.34781 * 119.99575 * 179.97438 * 2 1 3 10 10 O 1.21582 * 119.99244 * 184.84985 * 9 2 1 11 11 N 1.34773 * 120.00302 * 4.84955 * 9 2 1 12 12 C 1.46496 * 120.00125 * 185.02691 * 11 9 2 13 13 C 1.52999 * 109.47275 * 184.99502 * 12 11 9 14 14 C 1.50704 * 115.54984 * 54.05377 * 13 12 11 15 15 H 1.07994 * 119.99834 * 215.59241 * 14 13 12 16 16 C 1.37876 * 119.99533 * 35.31536 * 14 13 12 17 17 N 1.31510 * 120.00676 * 355.90148 * 16 14 13 18 18 Si 1.86809 * 119.99670 * 175.89999 * 16 14 13 19 19 H 1.48502 * 109.46894 * 60.00064 * 18 16 14 20 20 H 1.48494 * 109.46919 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47100 * 300.00405 * 18 16 14 22 22 C 1.52999 * 117.49924 * 199.72706 * 13 12 11 23 23 C 1.52997 * 117.49975 * 268.38604 * 13 12 11 24 24 H 1.08998 * 109.46949 * 274.16256 * 1 2 3 25 25 H 1.09006 * 109.46617 * 34.16392 * 1 2 3 26 26 H 1.08997 * 109.47320 * 154.16015 * 1 2 3 27 27 H 1.09001 * 109.47675 * 29.99438 * 3 2 1 28 28 H 1.08996 * 109.47100 * 150.00285 * 3 2 1 29 29 H 1.07999 * 126.57236 * 359.92474 * 5 4 3 30 30 H 1.08004 * 125.79179 * 179.97438 * 6 5 4 31 31 H 1.08005 * 125.79332 * 180.24143 * 8 7 6 32 32 H 0.97009 * 119.99800 * 5.03163 * 11 9 2 33 33 H 1.09003 * 109.46952 * 64.99521 * 12 11 9 34 34 H 1.09000 * 109.47017 * 304.99377 * 12 11 9 35 35 H 0.96995 * 120.00177 * 184.99788 * 17 16 14 36 36 H 1.09003 * 117.49446 * 215.00209 * 22 13 12 37 37 H 1.09003 * 117.49900 * 0.02562 * 22 13 12 38 38 H 1.09004 * 117.49739 * 359.97438 * 23 13 12 39 39 H 1.09002 * 117.50017 * 144.97368 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 6 1.6059 2.5146 -2.2153 6 6 2.2106 2.6533 -3.4087 7 8 3.3687 1.9737 -3.3793 8 6 3.5209 1.4002 -2.1745 9 6 2.1389 -1.1673 0.0005 10 8 3.3515 -1.1691 0.0895 11 7 1.4686 -2.3324 -0.0976 12 6 2.1887 -3.6033 0.0135 13 6 1.2250 -4.7608 -0.2558 14 6 0.4670 -4.6863 -1.5562 15 1 -0.5517 -5.0408 -1.6084 16 6 1.0724 -4.1603 -2.6777 17 7 2.2816 -3.6500 -2.5943 18 14 0.1749 -4.1726 -4.3161 19 1 -1.0878 -3.4006 -4.1945 20 1 1.0349 -3.5533 -5.3562 21 1 -0.1362 -5.5730 -4.6996 22 6 1.6285 -6.1478 0.2483 23 6 0.5062 -5.3759 0.9466 24 1 -0.3633 0.0746 1.0249 25 1 -0.3633 0.8504 -0.5771 26 1 -0.3634 -0.9249 -0.4479 27 1 1.6085 2.0284 0.5137 28 1 3.1499 1.1384 0.5138 29 1 0.6581 2.9402 -1.9207 30 1 1.8296 3.2157 -4.2484 31 1 4.3603 0.7956 -1.8642 32 1 0.5094 -2.3294 -0.2419 33 1 2.6016 -3.7004 1.0177 34 1 2.9982 -3.6273 -0.7161 35 1 2.6787 -3.2152 -3.3650 36 1 1.3457 -7.0065 -0.3606 37 1 2.5803 -6.2357 0.7722 38 1 0.7202 -4.9562 1.9296 39 1 -0.5151 -5.7264 0.7972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431057972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:21 Heat of formation + Delta-G solvation = 26.373673 kcal Electronic energy + Delta-G solvation = -22274.239954 eV Core-core repulsion = 18992.339349 eV Total energy + Delta-G solvation = -3281.900604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.31545 -39.26675 -36.81746 -35.16531 -33.35199 -32.46495 -32.05850 -29.70261 -27.10607 -26.34682 -25.50792 -24.18800 -21.38601 -21.23073 -20.37421 -19.22173 -18.96776 -17.59222 -17.12596 -16.16003 -15.85681 -15.31941 -15.05572 -14.72281 -14.37105 -13.91356 -13.55176 -13.19135 -12.93123 -12.71594 -12.64046 -12.47876 -12.26259 -11.95204 -11.63886 -11.36837 -11.10954 -11.03915 -10.71862 -10.50218 -10.21172 -9.70316 -9.62829 -9.17428 -8.95265 -8.80395 -8.37751 -8.25389 -8.22358 -7.59304 -5.93401 -4.14999 1.99382 2.66595 3.23642 3.32256 3.32377 3.37612 3.62145 4.13763 4.32248 4.76932 4.97038 5.04329 5.14761 5.34907 5.43802 5.50244 5.54932 5.72216 5.84978 5.95194 6.01441 6.07848 6.23447 6.34441 6.37966 6.58670 6.64046 6.68647 6.77391 6.89461 6.96917 7.14730 7.28422 7.34106 7.59907 7.71159 7.85351 8.05528 8.35762 8.80763 9.01363 9.48172 9.57600 10.94095 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.006429 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.890196 B = 4354.063967 C = 5262.944519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.638 5.638 3 C 0.207 3.793 4 C -0.204 4.204 5 C -0.202 4.202 6 C -0.056 4.056 7 O -0.180 6.180 8 C -0.005 4.005 9 C 0.705 3.295 10 O -0.605 6.605 11 N -0.699 5.699 12 C 0.182 3.818 13 C 0.037 3.963 14 C -0.500 4.500 15 H 0.059 0.941 16 C 0.076 3.924 17 N -0.859 5.859 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.199 4.199 23 C -0.213 4.213 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.143 0.857 30 H 0.196 0.804 31 H 0.205 0.795 32 H 0.393 0.607 33 H 0.012 0.988 34 H 0.114 0.886 35 H 0.262 0.738 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 11.539 2.556 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.376 5.376 3 C 0.083 3.917 4 C -0.207 4.207 5 C -0.221 4.221 6 C -0.123 4.123 7 O -0.076 6.076 8 C -0.074 4.074 9 C 0.406 3.594 10 O -0.485 6.485 11 N -0.351 5.351 12 C 0.059 3.941 13 C 0.036 3.964 14 C -0.537 4.537 15 H 0.077 0.923 16 C -0.129 4.129 17 N -0.495 5.495 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.238 4.238 23 C -0.250 4.250 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.161 0.839 30 H 0.213 0.787 31 H 0.221 0.779 32 H 0.228 0.772 33 H 0.031 0.969 34 H 0.132 0.868 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.717 11.498 2.273 11.846 hybrid contribution -1.345 -0.084 -0.982 1.668 sum -3.062 11.414 1.291 11.888 Atomic orbital electron populations 1.21612 0.80647 1.02837 1.00755 1.47016 1.05786 1.04788 1.80053 1.19369 0.97903 0.84052 0.90406 1.20922 0.96173 1.03816 0.99763 1.21664 1.01786 1.04151 0.94534 1.23892 0.86851 1.01284 1.00276 1.84072 1.36873 1.52474 1.34151 1.24129 1.01720 0.99409 0.82151 1.15864 0.85199 0.80339 0.77983 1.90788 1.12039 1.86314 1.59404 1.44924 1.11200 1.04227 1.74719 1.20903 0.96031 0.79630 0.97582 1.19248 0.95775 0.89456 0.91881 1.20416 0.98642 1.42751 0.91929 0.92319 1.24986 0.94618 0.94659 0.98634 1.69855 1.13827 1.35486 1.30286 0.86678 0.79443 0.78333 0.83657 1.20352 1.21290 1.20191 1.22936 0.96943 0.98888 1.04995 1.22943 0.96349 1.08489 0.97211 0.93314 0.91984 0.91012 0.90483 0.89231 0.83949 0.78690 0.77874 0.77169 0.96938 0.86842 0.92691 0.90280 0.91478 0.91404 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 10.44 59.85 0.62 1.81 16 2 N -0.64 -10.95 2.86 -188.74 -0.54 -11.49 16 3 C 0.21 3.07 5.98 -5.20 -0.03 3.04 16 4 C -0.20 -3.13 5.75 -104.74 -0.60 -3.74 16 5 C -0.20 -2.69 10.87 -39.70 -0.43 -3.12 16 6 C -0.06 -0.72 12.09 29.41 0.36 -0.37 16 7 O -0.18 -2.84 10.65 5.72 0.06 -2.78 16 8 C -0.01 -0.09 12.01 29.42 0.35 0.27 16 9 C 0.70 15.26 8.27 -86.92 -0.72 14.54 16 10 O -0.61 -14.90 15.88 5.29 0.08 -14.82 16 11 N -0.70 -15.45 4.90 -65.23 -0.32 -15.77 16 12 C 0.18 4.40 4.62 -4.04 -0.02 4.39 16 13 C 0.04 0.89 2.04 -155.66 -0.32 0.57 16 14 C -0.50 -12.82 8.43 -34.44 -0.29 -13.11 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.08 1.98 5.31 -17.82 -0.09 1.89 16 17 N -0.86 -23.38 10.11 55.43 0.56 -22.82 16 18 Si 0.89 20.58 29.54 -169.99 -5.02 15.55 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.20 -4.38 9.96 -26.70 -0.27 -4.65 16 23 C -0.21 -4.44 9.92 -26.70 -0.26 -4.70 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.07 1.08 5.94 -51.93 -0.31 0.77 16 27 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 28 H 0.09 1.41 7.36 -51.93 -0.38 1.03 16 29 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 30 H 0.20 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.20 3.29 8.06 -52.48 -0.42 2.87 16 32 H 0.39 8.28 5.68 -40.82 -0.23 8.04 16 33 H 0.01 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.11 3.15 5.90 -51.93 -0.31 2.84 16 35 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 36 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -30.28 331.09 -7.30 -37.58 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -5.42 Total: 12.74 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.70 Total: -3.19 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.30 Total: -50.08 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.14 Total: -17.60 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.28 -7.30 -37.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431057972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.954 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds