Wall clock time and date at job start Tue Mar 31 2020 01:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46494 * 119.99903 * 2 1 4 4 C 1.50701 * 109.46822 * 269.99837 * 3 2 1 5 5 C 1.41388 * 126.58380 * 90.00409 * 4 3 2 6 6 C 1.34502 * 106.84266 * 179.97438 * 5 4 3 7 7 O 1.34304 * 108.42452 * 359.97438 * 6 5 4 8 8 C 1.34299 * 109.47579 * 359.77192 * 7 6 5 9 9 C 1.34781 * 119.99575 * 179.97438 * 2 1 3 10 10 O 1.21582 * 119.99244 * 184.84985 * 9 2 1 11 11 N 1.34773 * 120.00302 * 4.84955 * 9 2 1 12 12 C 1.46496 * 120.00125 * 185.02691 * 11 9 2 13 13 C 1.52999 * 109.47275 * 184.99502 * 12 11 9 14 14 C 1.50704 * 115.54984 * 54.05377 * 13 12 11 15 15 H 1.07994 * 119.99834 * 215.59241 * 14 13 12 16 16 C 1.37876 * 119.99533 * 35.31536 * 14 13 12 17 17 N 1.31510 * 120.00676 * 355.90148 * 16 14 13 18 18 Si 1.86809 * 119.99670 * 175.89999 * 16 14 13 19 19 H 1.48502 * 109.46894 * 60.00064 * 18 16 14 20 20 H 1.48494 * 109.46919 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47100 * 300.00405 * 18 16 14 22 22 C 1.52999 * 117.49924 * 199.72706 * 13 12 11 23 23 C 1.52997 * 117.49975 * 268.38604 * 13 12 11 24 24 H 1.08998 * 109.46949 * 274.16256 * 1 2 3 25 25 H 1.09006 * 109.46617 * 34.16392 * 1 2 3 26 26 H 1.08997 * 109.47320 * 154.16015 * 1 2 3 27 27 H 1.09001 * 109.47675 * 29.99438 * 3 2 1 28 28 H 1.08996 * 109.47100 * 150.00285 * 3 2 1 29 29 H 1.07999 * 126.57236 * 359.92474 * 5 4 3 30 30 H 1.08004 * 125.79179 * 179.97438 * 6 5 4 31 31 H 1.08005 * 125.79332 * 180.24143 * 8 7 6 32 32 H 0.97009 * 119.99800 * 5.03163 * 11 9 2 33 33 H 1.09003 * 109.46952 * 64.99521 * 12 11 9 34 34 H 1.09000 * 109.47017 * 304.99377 * 12 11 9 35 35 H 0.96995 * 120.00177 * 184.99788 * 17 16 14 36 36 H 1.09003 * 117.49446 * 215.00209 * 22 13 12 37 37 H 1.09003 * 117.49900 * 0.02562 * 22 13 12 38 38 H 1.09004 * 117.49739 * 359.97438 * 23 13 12 39 39 H 1.09002 * 117.50017 * 144.97368 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 6 1.6059 2.5146 -2.2153 6 6 2.2106 2.6533 -3.4087 7 8 3.3687 1.9737 -3.3793 8 6 3.5209 1.4002 -2.1745 9 6 2.1389 -1.1673 0.0005 10 8 3.3515 -1.1691 0.0895 11 7 1.4686 -2.3324 -0.0976 12 6 2.1887 -3.6033 0.0135 13 6 1.2250 -4.7608 -0.2558 14 6 0.4670 -4.6863 -1.5562 15 1 -0.5517 -5.0408 -1.6084 16 6 1.0724 -4.1603 -2.6777 17 7 2.2816 -3.6500 -2.5943 18 14 0.1749 -4.1726 -4.3161 19 1 -1.0878 -3.4006 -4.1945 20 1 1.0349 -3.5533 -5.3562 21 1 -0.1362 -5.5730 -4.6996 22 6 1.6285 -6.1478 0.2483 23 6 0.5062 -5.3759 0.9466 24 1 -0.3633 0.0746 1.0249 25 1 -0.3633 0.8504 -0.5771 26 1 -0.3634 -0.9249 -0.4479 27 1 1.6085 2.0284 0.5137 28 1 3.1499 1.1384 0.5138 29 1 0.6581 2.9402 -1.9207 30 1 1.8296 3.2157 -4.2484 31 1 4.3603 0.7956 -1.8642 32 1 0.5094 -2.3294 -0.2419 33 1 2.6016 -3.7004 1.0177 34 1 2.9982 -3.6273 -0.7161 35 1 2.6787 -3.2152 -3.3650 36 1 1.3457 -7.0065 -0.3606 37 1 2.5803 -6.2357 0.7722 38 1 0.7202 -4.9562 1.9296 39 1 -0.5151 -5.7264 0.7972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431057972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:20 Heat of formation + Delta-G solvation = 8.563879 kcal Electronic energy + Delta-G solvation = -22275.012244 eV Core-core repulsion = 18992.339349 eV Total energy + Delta-G solvation = -3282.672895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.44210 -40.87578 -38.58173 -36.63435 -34.94426 -34.16541 -33.67948 -30.81503 -28.37735 -27.92832 -27.38812 -25.72795 -22.95154 -22.44334 -21.63826 -21.08906 -20.47861 -19.15117 -18.34535 -17.90789 -17.23936 -16.75079 -16.70776 -16.36068 -15.66386 -15.57580 -15.08801 -14.75672 -14.44408 -14.19941 -13.92060 -13.66551 -13.51770 -13.35795 -13.27712 -13.09586 -12.87905 -12.58329 -12.31593 -12.27112 -12.01406 -11.50811 -11.07708 -10.87129 -10.67080 -10.59759 -10.13840 -9.83403 -9.47792 -9.21980 -7.90167 -6.17533 0.84380 1.40011 1.43599 1.49656 1.52711 2.22383 2.29656 2.40583 2.48981 3.03512 3.42003 3.69352 3.93233 3.99334 4.20857 4.29501 4.35269 4.51952 4.57201 4.64951 4.73865 4.78351 4.84742 4.88552 4.92289 4.98227 5.10735 5.17123 5.27038 5.32379 5.55413 5.62383 5.62607 5.73590 6.00570 6.05021 6.17250 6.25226 6.40218 6.83668 7.35701 7.47379 7.90753 8.92920 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.006429 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.890196 B = 4354.063967 C = 5262.944519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.632 5.632 3 C 0.204 3.796 4 C -0.206 4.206 5 C -0.206 4.206 6 C -0.052 4.052 7 O -0.198 6.198 8 C -0.042 4.042 9 C 0.697 3.303 10 O -0.645 6.645 11 N -0.697 5.697 12 C 0.195 3.805 13 C 0.006 3.994 14 C -0.503 4.503 15 H 0.058 0.942 16 C 0.036 3.964 17 N -0.883 5.883 18 Si 0.944 3.056 19 H -0.266 1.266 20 H -0.298 1.298 21 H -0.274 1.274 22 C -0.200 4.200 23 C -0.183 4.183 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.119 0.881 28 H 0.071 0.929 29 H 0.175 0.825 30 H 0.237 0.763 31 H 0.188 0.812 32 H 0.398 0.602 33 H 0.010 0.990 34 H 0.074 0.926 35 H 0.252 0.748 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 12.742 2.799 14.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.370 5.370 3 C 0.081 3.919 4 C -0.209 4.209 5 C -0.225 4.225 6 C -0.119 4.119 7 O -0.094 6.094 8 C -0.111 4.111 9 C 0.398 3.602 10 O -0.528 6.528 11 N -0.350 5.350 12 C 0.070 3.930 13 C 0.005 3.995 14 C -0.541 4.541 15 H 0.077 0.923 16 C -0.166 4.166 17 N -0.519 5.519 18 Si 0.771 3.229 19 H -0.191 1.191 20 H -0.224 1.224 21 H -0.200 1.200 22 C -0.239 4.239 23 C -0.220 4.220 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.137 0.863 28 H 0.090 0.910 29 H 0.192 0.808 30 H 0.253 0.747 31 H 0.205 0.795 32 H 0.234 0.766 33 H 0.028 0.972 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.428 12.720 2.529 13.704 hybrid contribution -0.537 -0.433 -1.041 1.249 sum -4.965 12.287 1.487 13.335 Atomic orbital electron populations 1.21848 0.78203 1.03237 1.02864 1.47070 1.07324 1.03921 1.78652 1.19582 0.97851 0.83872 0.90567 1.21124 0.96160 1.03730 0.99909 1.22009 1.02702 1.03748 0.94078 1.24810 0.85470 1.00016 1.01591 1.84055 1.38413 1.53030 1.33863 1.24066 1.02585 1.01154 0.83246 1.16119 0.84890 0.81384 0.77801 1.90755 1.13937 1.87078 1.61003 1.44784 1.11250 1.03911 1.75021 1.20532 0.95382 0.81024 0.96034 1.19291 0.97135 0.90168 0.92856 1.20624 0.98601 1.42101 0.92740 0.92333 1.25579 0.95137 0.94697 1.01219 1.70079 1.15103 1.36586 1.30134 0.85830 0.78626 0.78257 0.80200 1.19098 1.22392 1.19976 1.22957 0.98089 0.97754 1.05097 1.22932 0.96358 1.06105 0.96636 0.90636 0.89268 0.92527 0.86305 0.91025 0.80765 0.74692 0.79518 0.76568 0.97154 0.90806 0.93856 0.90485 0.90675 0.89704 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.01 10.44 127.77 1.33 3.34 16 2 N -0.63 -20.96 2.86 -869.30 -2.48 -23.45 16 3 C 0.20 5.81 5.98 85.63 0.51 6.32 16 4 C -0.21 -6.16 5.75 -19.94 -0.11 -6.28 16 5 C -0.21 -4.90 10.87 22.19 0.24 -4.65 16 6 C -0.05 -1.24 12.09 66.96 0.81 -0.43 16 7 O -0.20 -6.21 10.65 -2.46 -0.03 -6.24 16 8 C -0.04 -1.42 12.01 66.97 0.80 -0.61 16 9 C 0.70 30.57 8.27 179.05 1.48 32.05 16 10 O -0.64 -33.06 15.88 -3.97 -0.06 -33.12 16 11 N -0.70 -31.04 4.90 -478.55 -2.34 -33.39 16 12 C 0.20 9.61 4.62 86.38 0.40 10.01 16 13 C 0.01 0.29 2.04 -52.93 -0.11 0.19 16 14 C -0.50 -25.53 8.43 25.60 0.22 -25.31 16 15 H 0.06 2.92 7.82 -2.91 -0.02 2.89 16 16 C 0.04 1.86 5.31 84.66 0.45 2.31 16 17 N -0.88 -49.35 10.11 21.45 0.22 -49.13 16 18 Si 0.94 42.12 29.54 68.60 2.03 44.15 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 22 C -0.20 -8.63 9.96 30.62 0.30 -8.32 16 23 C -0.18 -7.26 9.92 30.62 0.30 -6.95 16 24 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.09 1.74 8.10 -2.38 -0.02 1.72 16 26 H 0.06 1.59 5.94 -2.39 -0.01 1.58 16 27 H 0.12 2.37 8.07 -2.39 -0.02 2.35 16 28 H 0.07 2.29 7.36 -2.39 -0.02 2.28 16 29 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.24 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.19 6.69 8.06 -2.91 -0.02 6.67 16 32 H 0.40 16.59 5.68 -92.70 -0.53 16.07 16 33 H 0.01 0.50 8.09 -2.39 -0.02 0.48 16 34 H 0.07 4.28 5.90 -2.39 -0.01 4.26 16 35 H 0.25 14.19 8.32 -92.71 -0.77 13.42 16 36 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 39 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -66.94 331.09 4.49 -62.45 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: 0.53 Total: 37.07 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 6.63 Total: 1.65 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -4.61 Total: -105.97 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.09 Total: -39.36 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -66.94 4.49 -62.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431057972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.017 kcal (2) G-P(sol) polarization free energy of solvation -66.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds