Wall clock time and date at job start Tue Mar 31 2020 00:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.47265 * 2 1 4 4 C 1.35419 * 117.00119 * 180.02562 * 3 2 1 5 5 N 1.32240 * 119.80229 * 359.97438 * 4 3 2 6 6 C 1.31881 * 121.80076 * 180.02562 * 5 4 3 7 7 C 1.38358 * 121.18362 * 359.97438 * 6 5 4 8 8 C 1.38334 * 119.46125 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.82521 * 179.97438 * 8 7 6 10 10 C 1.39985 * 118.35094 * 0.26929 * 8 7 6 11 11 C 1.47521 * 120.59928 * 179.70498 * 10 8 7 12 12 O 1.21588 * 120.00103 * 90.00178 * 11 10 8 13 13 N 1.34775 * 119.99853 * 269.99673 * 11 10 8 14 14 C 1.46504 * 119.99846 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.46990 * 325.00705 * 14 13 11 16 16 C 1.52996 * 109.47099 * 85.00206 * 14 13 11 17 17 C 1.50703 * 109.47164 * 205.00351 * 14 13 11 18 18 H 1.07993 * 119.99786 * 0.02562 * 17 14 13 19 19 C 1.37875 * 119.99671 * 180.02562 * 17 14 13 20 20 N 1.31507 * 120.00631 * 359.97438 * 19 17 14 21 21 Si 1.86807 * 119.99636 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.46928 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47491 * 119.99946 * 21 19 17 24 24 H 1.48501 * 109.46698 * 239.99991 * 21 19 17 25 25 H 1.09005 * 109.46992 * 299.99617 * 1 2 3 26 26 H 1.08998 * 109.47112 * 60.00077 * 1 2 3 27 27 H 1.09005 * 109.46883 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46992 * 240.00383 * 2 1 3 29 29 H 1.09002 * 109.47584 * 119.99847 * 2 1 3 30 30 H 1.07993 * 119.40729 * 180.02562 * 6 5 4 31 31 H 1.08001 * 120.27064 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47152 * 89.99865 * 9 8 7 33 33 H 1.09001 * 109.46980 * 329.99965 * 9 8 7 34 34 H 1.09004 * 109.47113 * 209.99946 * 9 8 7 35 35 H 0.96997 * 120.00405 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47409 * 299.99831 * 16 14 13 37 37 H 1.08997 * 109.47405 * 60.00300 * 16 14 13 38 38 H 1.08998 * 109.47268 * 180.02562 * 16 14 13 39 39 H 0.97000 * 120.00818 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0005 6 6 5.4635 0.6003 -0.0005 7 6 6.0625 1.8475 -0.0011 8 6 5.2713 2.9823 -0.0011 9 6 5.8912 4.3559 -0.0011 10 6 3.8805 2.8230 0.0052 11 6 2.9900 3.9991 0.0120 12 8 2.6179 4.4860 -1.0381 13 7 2.5888 4.5337 1.1823 14 6 1.7049 5.7021 1.1891 15 1 1.9518 6.3494 0.3475 16 6 0.2507 5.2420 1.0690 17 6 1.8866 6.4620 2.4777 18 1 2.5904 6.1102 3.2174 19 6 1.1543 7.6064 2.7122 20 7 0.2976 8.0352 1.8113 21 14 1.3801 8.5489 4.3093 22 1 2.3958 7.8641 5.1487 23 1 1.8351 9.9301 4.0089 24 1 0.0883 8.6011 5.0400 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 6.0819 -0.2850 -0.0009 31 1 7.1390 1.9345 -0.0015 32 1 6.0407 4.6871 -1.0288 33 1 6.8518 4.3210 0.5127 34 1 5.2294 5.0532 0.5127 35 1 2.8858 4.1455 2.0201 36 1 0.1192 4.6924 0.1370 37 1 0.0036 4.5948 1.9105 38 1 -0.4070 6.1113 1.0736 39 1 -0.2174 8.8405 1.9761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433986963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:59 Heat of formation + Delta-G solvation = -51.051460 kcal Electronic energy + Delta-G solvation = -21944.639592 eV Core-core repulsion = 18659.381582 eV Total energy + Delta-G solvation = -3285.258010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.78236 -38.55393 -37.96969 -34.74525 -33.78398 -32.38274 -32.00457 -30.14988 -28.70142 -27.88888 -25.22996 -24.19814 -23.52551 -21.76226 -21.01361 -19.48984 -18.00032 -17.68810 -16.97201 -16.28987 -15.85147 -15.30359 -15.04036 -14.49746 -14.11655 -13.95526 -13.45919 -13.39810 -13.12333 -12.84830 -12.57584 -12.49176 -12.33953 -12.16534 -11.82188 -11.65866 -11.47887 -11.09494 -10.94851 -10.75281 -10.69773 -10.30916 -10.21105 -9.90561 -9.48970 -9.03074 -8.98106 -8.53905 -8.42359 -7.88638 -6.10691 -4.19876 1.01189 1.26563 3.01829 3.24324 3.31844 3.33224 3.35162 3.66920 4.04717 4.31198 4.43395 4.69220 4.93532 5.01966 5.08576 5.13509 5.21398 5.26152 5.36738 5.49033 5.62580 5.66448 5.73337 5.85252 5.86145 6.04652 6.11057 6.27826 6.46255 6.88162 7.04165 7.19812 7.30536 7.47845 7.59218 7.71563 7.80658 7.94237 8.17274 8.67856 8.79329 9.12379 9.47554 10.95297 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.005336 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.353877 B = 5246.358092 C = 6191.233452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.068 3.932 3 O -0.293 6.293 4 C 0.354 3.646 5 N -0.547 5.547 6 C 0.147 3.853 7 C -0.218 4.218 8 C 0.025 3.975 9 C -0.125 4.125 10 C -0.190 4.190 11 C 0.564 3.436 12 O -0.544 6.544 13 N -0.697 5.697 14 C 0.264 3.736 15 H 0.049 0.951 16 C -0.146 4.146 17 C -0.532 4.532 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.883 5.883 21 Si 0.901 3.099 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.389 0.611 36 H 0.016 0.984 37 H 0.026 0.974 38 H 0.089 0.911 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.724 -14.764 -1.496 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 O -0.199 6.199 4 C 0.175 3.825 5 N -0.272 5.272 6 C -0.009 4.009 7 C -0.238 4.238 8 C 0.017 3.983 9 C -0.181 4.181 10 C -0.196 4.196 11 C 0.347 3.653 12 O -0.423 6.423 13 N -0.343 5.343 14 C 0.163 3.837 15 H 0.067 0.933 16 C -0.204 4.204 17 C -0.570 4.570 18 H 0.080 0.920 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.728 3.272 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.177 0.823 31 H 0.158 0.842 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.221 0.779 36 H 0.035 0.965 37 H 0.045 0.955 38 H 0.108 0.892 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.654 -14.855 -2.264 16.864 hybrid contribution 0.627 0.785 1.239 1.595 sum 8.281 -14.070 -1.025 16.359 Atomic orbital electron populations 1.21824 0.92911 1.02568 1.03900 1.22622 0.95005 0.80934 1.02193 1.86325 1.16292 1.30582 1.86692 1.19689 0.84258 0.88464 0.90067 1.67355 1.06567 1.32437 1.20806 1.22446 0.89145 0.97240 0.92024 1.21760 1.01168 0.92506 1.08394 1.20213 0.90622 0.96978 0.90527 1.20948 1.01293 0.92161 1.03720 1.20113 0.94442 0.93137 1.11920 1.17660 0.80188 0.82319 0.85118 1.90757 1.57541 1.62179 1.31781 1.46527 1.49059 1.32395 1.06364 1.18788 0.85629 0.81222 0.98061 0.93308 1.22052 1.00351 1.01132 0.96884 1.21245 1.23785 1.09466 1.02546 0.92038 1.24880 0.94782 0.96997 0.97006 1.69913 1.24821 1.23274 1.34034 0.86405 0.78006 0.79708 0.83038 1.19757 1.20875 1.20887 0.91340 0.91462 0.90441 0.91738 0.91644 0.82298 0.84248 0.89728 0.90424 0.89898 0.77924 0.96507 0.95479 0.89207 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 37.16 0.38 -1.37 16 2 C 0.07 0.89 6.03 37.16 0.22 1.12 16 3 O -0.29 -5.16 9.57 -17.95 -0.17 -5.33 16 4 C 0.35 6.10 7.51 -16.60 -0.12 5.97 16 5 N -0.55 -7.98 9.21 -12.98 -0.12 -8.10 16 6 C 0.15 1.69 11.17 -17.49 -0.20 1.50 16 7 C -0.22 -2.48 9.79 -39.50 -0.39 -2.86 16 8 C 0.02 0.36 5.95 -103.93 -0.62 -0.26 16 9 C -0.12 -1.64 9.69 36.01 0.35 -1.29 16 10 C -0.19 -3.42 5.66 -104.69 -0.59 -4.01 16 11 C 0.56 12.35 5.38 -12.48 -0.07 12.28 16 12 O -0.54 -14.05 16.77 5.29 0.09 -13.96 16 13 N -0.70 -15.42 5.07 -55.98 -0.28 -15.70 16 14 C 0.26 6.89 2.56 -69.08 -0.18 6.71 16 15 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 16 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 17 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 20 N -0.88 -24.99 11.32 55.43 0.63 -24.36 16 21 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 29 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.08 1.30 7.18 -51.93 -0.37 0.93 16 35 H 0.39 7.74 8.52 -40.82 -0.35 7.39 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -32.47 334.77 -6.71 -39.17 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.61 Total: 6.01 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.26 Total: 1.58 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.22 Total: -48.16 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.08 Total: -19.29 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.47 -6.71 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433986963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.879 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds