Wall clock time and date at job start Tue Mar 31 2020 00:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.47265 * 2 1 4 4 C 1.35419 * 117.00119 * 180.02562 * 3 2 1 5 5 N 1.32240 * 119.80229 * 359.97438 * 4 3 2 6 6 C 1.31881 * 121.80076 * 180.02562 * 5 4 3 7 7 C 1.38358 * 121.18362 * 359.97438 * 6 5 4 8 8 C 1.38334 * 119.46125 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.82521 * 179.97438 * 8 7 6 10 10 C 1.39985 * 118.35094 * 0.26929 * 8 7 6 11 11 C 1.47521 * 120.59928 * 179.70498 * 10 8 7 12 12 O 1.21588 * 120.00103 * 90.00178 * 11 10 8 13 13 N 1.34775 * 119.99853 * 269.99673 * 11 10 8 14 14 C 1.46504 * 119.99846 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.46990 * 325.00705 * 14 13 11 16 16 C 1.52996 * 109.47099 * 85.00206 * 14 13 11 17 17 C 1.50703 * 109.47164 * 205.00351 * 14 13 11 18 18 H 1.07993 * 119.99786 * 0.02562 * 17 14 13 19 19 C 1.37875 * 119.99671 * 180.02562 * 17 14 13 20 20 N 1.31507 * 120.00631 * 359.97438 * 19 17 14 21 21 Si 1.86807 * 119.99636 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.46928 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47491 * 119.99946 * 21 19 17 24 24 H 1.48501 * 109.46698 * 239.99991 * 21 19 17 25 25 H 1.09005 * 109.46992 * 299.99617 * 1 2 3 26 26 H 1.08998 * 109.47112 * 60.00077 * 1 2 3 27 27 H 1.09005 * 109.46883 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46992 * 240.00383 * 2 1 3 29 29 H 1.09002 * 109.47584 * 119.99847 * 2 1 3 30 30 H 1.07993 * 119.40729 * 180.02562 * 6 5 4 31 31 H 1.08001 * 120.27064 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47152 * 89.99865 * 9 8 7 33 33 H 1.09001 * 109.46980 * 329.99965 * 9 8 7 34 34 H 1.09004 * 109.47113 * 209.99946 * 9 8 7 35 35 H 0.96997 * 120.00405 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47409 * 299.99831 * 16 14 13 37 37 H 1.08997 * 109.47405 * 60.00300 * 16 14 13 38 38 H 1.08998 * 109.47268 * 180.02562 * 16 14 13 39 39 H 0.97000 * 120.00818 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0005 6 6 5.4635 0.6003 -0.0005 7 6 6.0625 1.8475 -0.0011 8 6 5.2713 2.9823 -0.0011 9 6 5.8912 4.3559 -0.0011 10 6 3.8805 2.8230 0.0052 11 6 2.9900 3.9991 0.0120 12 8 2.6179 4.4860 -1.0381 13 7 2.5888 4.5337 1.1823 14 6 1.7049 5.7021 1.1891 15 1 1.9518 6.3494 0.3475 16 6 0.2507 5.2420 1.0690 17 6 1.8866 6.4620 2.4777 18 1 2.5904 6.1102 3.2174 19 6 1.1543 7.6064 2.7122 20 7 0.2976 8.0352 1.8113 21 14 1.3801 8.5489 4.3093 22 1 2.3958 7.8641 5.1487 23 1 1.8351 9.9301 4.0089 24 1 0.0883 8.6011 5.0400 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 6.0819 -0.2850 -0.0009 31 1 7.1390 1.9345 -0.0015 32 1 6.0407 4.6871 -1.0288 33 1 6.8518 4.3210 0.5127 34 1 5.2294 5.0532 0.5127 35 1 2.8858 4.1455 2.0201 36 1 0.1192 4.6924 0.1370 37 1 0.0036 4.5948 1.9105 38 1 -0.4070 6.1113 1.0736 39 1 -0.2174 8.8405 1.9761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433986963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:59 Heat of formation + Delta-G solvation = -74.995103 kcal Electronic energy + Delta-G solvation = -21945.677867 eV Core-core repulsion = 18659.381582 eV Total energy + Delta-G solvation = -3286.296284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.98529 -40.21335 -39.15713 -36.74687 -34.95578 -34.28317 -33.13468 -31.48545 -30.40944 -29.01844 -27.36978 -25.50183 -24.55440 -23.20820 -22.46351 -21.30935 -19.41569 -19.09981 -18.13026 -17.76823 -17.46668 -17.13093 -16.36884 -15.99823 -15.37984 -15.15852 -15.09890 -14.87370 -14.45834 -14.16994 -14.03864 -13.73519 -13.61005 -13.42189 -13.20324 -13.04831 -12.90002 -12.85482 -12.78214 -12.50053 -12.31208 -12.14332 -11.75813 -11.26510 -11.13456 -10.65972 -10.62567 -10.48502 -9.83978 -9.54698 -8.18717 -6.36799 -0.09627 0.19340 1.44262 1.44634 1.57354 1.62676 1.95095 2.31279 2.51896 2.67775 3.11446 3.29372 3.70126 3.84470 3.90049 4.03979 4.12819 4.13894 4.38871 4.45840 4.58402 4.66227 4.70907 4.78669 4.82109 4.88610 4.89309 5.05541 5.06931 5.16194 5.24709 5.38633 5.48912 5.56393 5.63061 5.84298 6.05359 6.20578 6.68939 6.74056 6.84858 7.27398 7.43753 8.88229 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.005336 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.353877 B = 5246.358092 C = 6191.233452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.327 6.327 4 C 0.339 3.661 5 N -0.551 5.551 6 C 0.157 3.843 7 C -0.198 4.198 8 C 0.019 3.981 9 C -0.123 4.123 10 C -0.227 4.227 11 C 0.570 3.430 12 O -0.595 6.595 13 N -0.692 5.692 14 C 0.272 3.728 15 H 0.001 0.999 16 C -0.130 4.130 17 C -0.545 4.545 18 H 0.072 0.928 19 C 0.015 3.985 20 N -0.917 5.917 21 Si 0.975 3.025 22 H -0.260 1.260 23 H -0.281 1.281 24 H -0.278 1.278 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.210 0.790 31 H 0.187 0.813 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.047 0.953 35 H 0.400 0.600 36 H 0.007 0.993 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.395 -16.795 0.049 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.234 6.234 4 C 0.161 3.839 5 N -0.275 5.275 6 C 0.001 3.999 7 C -0.218 4.218 8 C 0.011 3.989 9 C -0.180 4.180 10 C -0.234 4.234 11 C 0.356 3.644 12 O -0.477 6.477 13 N -0.339 5.339 14 C 0.169 3.831 15 H 0.019 0.981 16 C -0.189 4.189 17 C -0.583 4.583 18 H 0.091 0.909 19 C -0.185 4.185 20 N -0.556 5.556 21 Si 0.800 3.200 22 H -0.184 1.184 23 H -0.207 1.207 24 H -0.204 1.204 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.130 0.870 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.226 0.774 31 H 0.204 0.796 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.066 0.934 35 H 0.235 0.765 36 H 0.026 0.974 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.342 -16.922 -0.699 19.844 hybrid contribution -0.115 1.325 0.696 1.501 sum 10.227 -15.598 -0.003 18.651 Atomic orbital electron populations 1.21866 0.91904 1.04398 1.02657 1.22861 0.95817 0.79471 1.02911 1.86287 1.17175 1.33025 1.86947 1.19756 0.84496 0.88699 0.90971 1.67484 1.07911 1.31079 1.21068 1.23394 0.88336 0.99245 0.88911 1.22227 1.03065 0.90904 1.05597 1.20507 0.89404 0.98781 0.90248 1.20983 1.02295 0.90859 1.03825 1.19894 0.95347 0.91599 1.16522 1.18243 0.79619 0.82736 0.83832 1.90706 1.59523 1.64109 1.33395 1.46292 1.48656 1.31493 1.07411 1.18413 0.86235 0.82049 0.96422 0.98108 1.21870 1.00115 1.00183 0.96756 1.21509 1.24204 1.09968 1.02660 0.90941 1.25816 0.94227 0.97862 1.00564 1.70058 1.25601 1.23774 1.36131 0.85250 0.78247 0.77987 0.78557 1.18386 1.20674 1.20409 0.92451 0.92767 0.87022 0.91099 0.90622 0.77364 0.79585 0.89704 0.86402 0.93362 0.76540 0.97415 0.94376 0.91133 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 10.28 71.98 0.74 -2.66 16 2 C 0.06 1.66 6.03 71.98 0.43 2.10 16 3 O -0.33 -11.85 9.57 -87.14 -0.83 -12.68 16 4 C 0.34 11.60 7.51 85.13 0.64 12.24 16 5 N -0.55 -14.76 9.21 -308.00 -2.84 -17.59 16 6 C 0.16 2.89 11.17 84.71 0.95 3.84 16 7 C -0.20 -3.61 9.79 22.32 0.22 -3.39 16 8 C 0.02 0.51 5.95 -19.42 -0.12 0.39 16 9 C -0.12 -3.11 9.69 71.24 0.69 -2.42 16 10 C -0.23 -8.29 5.66 -19.91 -0.11 -8.40 16 11 C 0.57 26.31 5.38 86.69 0.47 26.77 16 12 O -0.60 -32.96 16.77 -3.99 -0.07 -33.02 16 13 N -0.69 -32.09 5.07 -449.28 -2.28 -34.36 16 14 C 0.27 14.91 2.56 44.24 0.11 15.02 16 15 H 0.00 0.07 7.58 -2.38 -0.02 0.05 16 16 C -0.13 -7.08 9.26 71.98 0.67 -6.41 16 17 C -0.55 -29.69 8.73 25.60 0.22 -29.47 16 18 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 19 C 0.02 0.84 5.30 84.66 0.45 1.29 16 20 N -0.92 -53.45 11.32 21.45 0.24 -53.21 16 21 Si 0.98 42.40 29.54 68.60 2.03 44.43 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.07 1.71 8.10 -2.38 -0.02 1.69 16 29 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 30 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.12 1.94 8.10 -2.39 -0.02 1.92 16 34 H 0.05 1.55 7.18 -2.38 -0.02 1.53 16 35 H 0.40 16.47 8.52 -92.71 -0.79 15.68 16 36 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 4.09 6.07 -2.39 -0.01 4.08 16 39 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -75.64 334.77 1.88 -73.76 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.27 Total: 23.79 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.36 Total: 8.90 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -4.87 Total: -105.17 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -0.90 Total: -45.71 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -75.64 1.88 -73.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433986963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.237 kcal (2) G-P(sol) polarization free energy of solvation -75.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds