Wall clock time and date at job start Tue Mar 31 2020 00:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42893 * 109.47641 * 2 1 4 4 C 1.35425 * 117.00521 * 180.02562 * 3 2 1 5 5 N 1.32240 * 119.79798 * 359.97438 * 4 3 2 6 6 C 1.31881 * 121.80076 * 180.02562 * 5 4 3 7 7 C 1.38358 * 121.18750 * 359.96859 * 6 5 4 8 8 C 1.38339 * 119.45385 * 0.03153 * 7 6 5 9 9 C 1.50703 * 120.82170 * 179.97438 * 8 7 6 10 10 C 1.39987 * 118.35329 * 0.24916 * 8 7 6 11 11 C 1.47526 * 120.59778 * 179.72779 * 10 8 7 12 12 O 1.21589 * 119.99933 * 89.99732 * 11 10 8 13 13 N 1.34772 * 119.99859 * 269.99522 * 11 10 8 14 14 C 1.46504 * 119.99899 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.46548 * 35.00846 * 14 13 11 16 16 C 1.52987 * 109.47572 * 275.00696 * 14 13 11 17 17 C 1.50701 * 109.46821 * 155.00271 * 14 13 11 18 18 H 1.07991 * 120.00339 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99837 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99974 * 0.02562 * 19 17 14 21 21 Si 1.86794 * 119.99989 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47047 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47129 * 120.00014 * 21 19 17 24 24 H 1.48506 * 109.47002 * 239.99832 * 21 19 17 25 25 H 1.09002 * 109.46743 * 300.00282 * 1 2 3 26 26 H 1.09004 * 109.46919 * 59.99747 * 1 2 3 27 27 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47260 * 239.99709 * 2 1 3 29 29 H 1.09004 * 109.46919 * 120.00252 * 2 1 3 30 30 H 1.08003 * 119.40746 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.27051 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47152 * 89.99938 * 9 8 7 33 33 H 1.09001 * 109.46980 * 330.00038 * 9 8 7 34 34 H 1.09004 * 109.47113 * 210.00019 * 9 8 7 35 35 H 0.97003 * 120.00383 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47693 * 59.99802 * 16 14 13 37 37 H 1.09004 * 109.47659 * 179.97438 * 16 14 13 38 38 H 1.09002 * 109.47307 * 299.99686 * 16 14 13 39 39 H 0.96999 * 120.00190 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5246 -0.0005 5 7 4.1509 0.4730 -0.0005 6 6 5.4635 0.6000 -0.0005 7 6 6.0627 1.8472 -0.0012 8 6 5.2715 2.9820 -0.0012 9 6 5.8915 4.3555 -0.0014 10 6 3.8807 2.8227 0.0048 11 6 2.9903 3.9989 0.0111 12 8 2.6186 4.4857 -1.0393 13 7 2.5888 4.5339 1.1811 14 6 1.7050 5.7023 1.1874 15 1 1.0120 5.6380 0.3485 16 6 2.5426 6.9762 1.0606 17 6 0.9287 5.7379 2.4786 18 1 1.0789 4.9677 3.2204 19 6 0.0265 6.7540 2.7128 20 7 -0.1568 7.6918 1.8091 21 14 -0.9352 6.7986 4.3135 22 1 -0.5489 5.6380 5.1555 23 1 -0.6323 8.0590 5.0379 24 1 -2.3894 6.7339 4.0193 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 6.0820 -0.2854 -0.0009 31 1 7.1392 1.9339 -0.0016 32 1 6.0409 4.6866 -1.0291 33 1 6.8522 4.3206 0.5124 34 1 5.2298 5.0529 0.5125 35 1 2.8856 4.1458 2.0191 36 1 3.1041 6.9504 0.1267 37 1 1.8850 7.8455 1.0648 38 1 3.2356 7.0404 1.8995 39 1 -0.7912 8.4068 1.9740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433986964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:03 Heat of formation + Delta-G solvation = -50.940431 kcal Electronic energy + Delta-G solvation = -21940.377337 eV Core-core repulsion = 18655.124142 eV Total energy + Delta-G solvation = -3285.253195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.77850 -38.55420 -37.95811 -34.74785 -33.79272 -32.37349 -31.98209 -30.14336 -28.74870 -27.86691 -25.25114 -24.20768 -23.50361 -21.74913 -21.01753 -19.49246 -17.99151 -17.67797 -16.98724 -16.26736 -15.83435 -15.32089 -15.01675 -14.48296 -14.11961 -13.99172 -13.59926 -13.15882 -13.09059 -12.90391 -12.63184 -12.47818 -12.37127 -12.14693 -11.87637 -11.64629 -11.44049 -11.09545 -10.94149 -10.75784 -10.69632 -10.30364 -10.22894 -9.90753 -9.50070 -9.03044 -8.99167 -8.53476 -8.41803 -7.88919 -6.10225 -4.18787 1.01164 1.26379 3.03879 3.24983 3.31778 3.33480 3.36452 3.67021 4.05028 4.31648 4.44040 4.67735 4.93449 5.05775 5.10007 5.14570 5.21759 5.26154 5.39838 5.47025 5.61318 5.65677 5.73294 5.86084 5.89721 6.01731 6.14826 6.26451 6.45137 6.83343 6.96349 7.15962 7.32399 7.46916 7.57770 7.71384 7.81335 7.93975 8.16497 8.67861 8.80166 9.12381 9.48356 10.95958 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.005596 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.989636 B = 5002.089666 C = 6056.102853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.068 3.932 3 O -0.292 6.292 4 C 0.355 3.645 5 N -0.547 5.547 6 C 0.148 3.852 7 C -0.218 4.218 8 C 0.023 3.977 9 C -0.124 4.124 10 C -0.190 4.190 11 C 0.564 3.436 12 O -0.544 6.544 13 N -0.696 5.696 14 C 0.264 3.736 15 H 0.050 0.950 16 C -0.147 4.147 17 C -0.530 4.530 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.901 3.099 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.389 0.611 36 H 0.015 0.985 37 H 0.091 0.909 38 H 0.027 0.973 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.639 -13.325 -1.483 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.007 4.007 3 O -0.198 6.198 4 C 0.176 3.824 5 N -0.272 5.272 6 C -0.008 4.008 7 C -0.239 4.239 8 C 0.016 3.984 9 C -0.180 4.180 10 C -0.196 4.196 11 C 0.347 3.653 12 O -0.422 6.422 13 N -0.343 5.343 14 C 0.162 3.838 15 H 0.067 0.933 16 C -0.205 4.205 17 C -0.569 4.569 18 H 0.080 0.920 19 C -0.137 4.137 20 N -0.522 5.522 21 Si 0.729 3.271 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.177 0.823 31 H 0.157 0.843 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.221 0.779 36 H 0.034 0.966 37 H 0.109 0.891 38 H 0.046 0.954 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.589 -13.401 -2.251 16.632 hybrid contribution 0.049 0.352 1.235 1.285 sum 9.638 -13.049 -1.016 16.255 Atomic orbital electron populations 1.21826 0.92860 1.02546 1.04016 1.22624 0.95067 0.80884 1.02149 1.86337 1.16219 1.30624 1.86588 1.19703 0.84306 0.88460 0.89911 1.67362 1.06560 1.32455 1.20778 1.22450 0.89157 0.97238 0.91982 1.21751 1.01136 0.92513 1.08488 1.20190 0.90613 0.96924 0.90717 1.20936 1.01198 0.92192 1.03698 1.20109 0.94422 0.93166 1.11937 1.17660 0.80308 0.82187 0.85123 1.90757 1.57157 1.62574 1.31759 1.46520 1.49015 1.32425 1.06365 1.18784 0.87160 0.79602 0.98205 0.93261 1.22081 0.99374 1.02456 0.96624 1.21244 1.22926 1.10428 1.02265 0.92046 1.24878 0.96576 0.95197 0.97047 1.69912 1.35218 1.13083 1.33938 0.86401 0.79744 0.77947 0.83053 1.19763 1.20880 1.20876 0.91225 0.91448 0.90461 0.91763 0.91646 0.82298 0.84263 0.89736 0.90433 0.90115 0.77925 0.96630 0.89064 0.95425 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.28 37.16 0.38 -1.47 16 2 C 0.07 0.93 6.03 37.16 0.22 1.15 16 3 O -0.29 -5.28 9.57 -17.97 -0.17 -5.45 16 4 C 0.36 6.19 7.51 -16.61 -0.12 6.07 16 5 N -0.55 -8.05 9.21 -12.98 -0.12 -8.17 16 6 C 0.15 1.70 11.17 -17.49 -0.20 1.51 16 7 C -0.22 -2.46 9.79 -39.50 -0.39 -2.85 16 8 C 0.02 0.34 5.95 -103.93 -0.62 -0.28 16 9 C -0.12 -1.58 9.69 36.01 0.35 -1.23 16 10 C -0.19 -3.43 5.66 -104.69 -0.59 -4.02 16 11 C 0.56 12.36 5.38 -12.48 -0.07 12.30 16 12 O -0.54 -14.06 16.77 5.29 0.09 -13.97 16 13 N -0.70 -15.42 5.07 -55.98 -0.28 -15.71 16 14 C 0.26 6.87 2.56 -69.09 -0.18 6.70 16 15 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 16 C -0.15 -3.65 9.26 37.15 0.34 -3.31 16 17 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 20 N -0.88 -25.07 11.32 55.43 0.63 -24.45 16 21 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 29 H 0.07 0.83 8.10 -51.93 -0.42 0.40 16 30 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 31 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 0.74 8.10 -51.93 -0.42 0.31 16 34 H 0.08 1.21 7.18 -51.93 -0.37 0.84 16 35 H 0.39 7.74 8.53 -40.82 -0.35 7.40 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 334.78 15.07 5.05 5.05 Total: -1.00 -32.64 334.78 -6.71 -39.35 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.61 Total: 5.85 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.26 Total: 1.66 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.22 Total: -48.33 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.08 Total: -19.42 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.64 -6.71 -39.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433986964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.591 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds