Wall clock time and date at job start Tue Mar 31 2020 00:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42893 * 109.47641 * 2 1 4 4 C 1.35425 * 117.00521 * 180.02562 * 3 2 1 5 5 N 1.32240 * 119.79798 * 359.97438 * 4 3 2 6 6 C 1.31881 * 121.80076 * 180.02562 * 5 4 3 7 7 C 1.38358 * 121.18750 * 359.96859 * 6 5 4 8 8 C 1.38339 * 119.45385 * 0.03153 * 7 6 5 9 9 C 1.50703 * 120.82170 * 179.97438 * 8 7 6 10 10 C 1.39987 * 118.35329 * 0.24916 * 8 7 6 11 11 C 1.47526 * 120.59778 * 179.72779 * 10 8 7 12 12 O 1.21589 * 119.99933 * 89.99732 * 11 10 8 13 13 N 1.34772 * 119.99859 * 269.99522 * 11 10 8 14 14 C 1.46504 * 119.99899 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.46548 * 35.00846 * 14 13 11 16 16 C 1.52987 * 109.47572 * 275.00696 * 14 13 11 17 17 C 1.50701 * 109.46821 * 155.00271 * 14 13 11 18 18 H 1.07991 * 120.00339 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99837 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99974 * 0.02562 * 19 17 14 21 21 Si 1.86794 * 119.99989 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47047 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47129 * 120.00014 * 21 19 17 24 24 H 1.48506 * 109.47002 * 239.99832 * 21 19 17 25 25 H 1.09002 * 109.46743 * 300.00282 * 1 2 3 26 26 H 1.09004 * 109.46919 * 59.99747 * 1 2 3 27 27 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47260 * 239.99709 * 2 1 3 29 29 H 1.09004 * 109.46919 * 120.00252 * 2 1 3 30 30 H 1.08003 * 119.40746 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.27051 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47152 * 89.99938 * 9 8 7 33 33 H 1.09001 * 109.46980 * 330.00038 * 9 8 7 34 34 H 1.09004 * 109.47113 * 210.00019 * 9 8 7 35 35 H 0.97003 * 120.00383 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47693 * 59.99802 * 16 14 13 37 37 H 1.09004 * 109.47659 * 179.97438 * 16 14 13 38 38 H 1.09002 * 109.47307 * 299.99686 * 16 14 13 39 39 H 0.96999 * 120.00190 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5246 -0.0005 5 7 4.1509 0.4730 -0.0005 6 6 5.4635 0.6000 -0.0005 7 6 6.0627 1.8472 -0.0012 8 6 5.2715 2.9820 -0.0012 9 6 5.8915 4.3555 -0.0014 10 6 3.8807 2.8227 0.0048 11 6 2.9903 3.9989 0.0111 12 8 2.6186 4.4857 -1.0393 13 7 2.5888 4.5339 1.1811 14 6 1.7050 5.7023 1.1874 15 1 1.0120 5.6380 0.3485 16 6 2.5426 6.9762 1.0606 17 6 0.9287 5.7379 2.4786 18 1 1.0789 4.9677 3.2204 19 6 0.0265 6.7540 2.7128 20 7 -0.1568 7.6918 1.8091 21 14 -0.9352 6.7986 4.3135 22 1 -0.5489 5.6380 5.1555 23 1 -0.6323 8.0590 5.0379 24 1 -2.3894 6.7339 4.0193 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 6.0820 -0.2854 -0.0009 31 1 7.1392 1.9339 -0.0016 32 1 6.0409 4.6866 -1.0291 33 1 6.8522 4.3206 0.5124 34 1 5.2298 5.0529 0.5125 35 1 2.8856 4.1458 2.0191 36 1 3.1041 6.9504 0.1267 37 1 1.8850 7.8455 1.0648 38 1 3.2356 7.0404 1.8995 39 1 -0.7912 8.4068 1.9740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433986964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:02 Heat of formation + Delta-G solvation = -75.143857 kcal Electronic energy + Delta-G solvation = -21941.426877 eV Core-core repulsion = 18655.124142 eV Total energy + Delta-G solvation = -3286.302735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.98593 -40.21730 -39.15802 -36.74531 -34.95359 -34.28372 -33.13932 -31.49516 -30.41498 -28.98807 -27.37308 -25.51670 -24.56092 -23.18515 -22.47109 -21.30623 -19.41244 -19.10361 -18.16123 -17.74200 -17.47938 -17.13429 -16.38374 -15.92752 -15.57048 -15.13317 -14.97279 -14.86522 -14.41596 -14.17507 -14.14426 -13.72830 -13.56370 -13.42538 -13.20716 -13.05482 -12.94562 -12.82631 -12.76451 -12.50272 -12.30146 -12.15459 -11.76337 -11.26750 -11.12982 -10.65967 -10.62456 -10.49416 -9.83266 -9.54692 -8.19622 -6.37244 -0.09419 0.19492 1.42394 1.43248 1.55635 1.62673 1.95539 2.31366 2.51190 2.67719 3.10485 3.29319 3.70326 3.84567 3.90013 4.03300 4.12268 4.14179 4.38017 4.46021 4.58634 4.66865 4.72951 4.78426 4.82064 4.87912 4.89116 5.04929 5.07258 5.15944 5.25370 5.39851 5.49222 5.55797 5.64045 5.86337 6.06598 6.20908 6.68410 6.74252 6.84828 7.26952 7.43527 8.87183 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.005596 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.989636 B = 5002.089666 C = 6056.102853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.329 6.329 4 C 0.338 3.662 5 N -0.551 5.551 6 C 0.156 3.844 7 C -0.198 4.198 8 C 0.019 3.981 9 C -0.123 4.123 10 C -0.228 4.228 11 C 0.570 3.430 12 O -0.595 6.595 13 N -0.691 5.691 14 C 0.271 3.729 15 H -0.005 1.005 16 C -0.130 4.130 17 C -0.546 4.546 18 H 0.068 0.932 19 C 0.016 3.984 20 N -0.916 5.916 21 Si 0.974 3.026 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.282 1.282 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.112 0.888 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.210 0.790 31 H 0.188 0.812 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.049 0.951 35 H 0.400 0.600 36 H 0.014 0.986 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.046 -15.517 0.004 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.236 6.236 4 C 0.159 3.841 5 N -0.276 5.276 6 C 0.000 4.000 7 C -0.218 4.218 8 C 0.011 3.989 9 C -0.179 4.179 10 C -0.234 4.234 11 C 0.356 3.644 12 O -0.477 6.477 13 N -0.338 5.338 14 C 0.168 3.832 15 H 0.013 0.987 16 C -0.189 4.189 17 C -0.584 4.584 18 H 0.087 0.913 19 C -0.184 4.184 20 N -0.554 5.554 21 Si 0.798 3.202 22 H -0.187 1.187 23 H -0.200 1.200 24 H -0.208 1.208 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.226 0.774 31 H 0.205 0.795 32 H 0.103 0.897 33 H 0.137 0.863 34 H 0.068 0.932 35 H 0.234 0.766 36 H 0.033 0.967 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.019 -15.621 -0.744 19.724 hybrid contribution -0.598 0.947 0.711 1.327 sum 11.421 -14.675 -0.033 18.595 Atomic orbital electron populations 1.21869 0.92007 1.04398 1.02605 1.22853 0.95762 0.79468 1.02923 1.86295 1.17315 1.33055 1.86942 1.19789 0.84443 0.88822 0.91011 1.67480 1.07957 1.31106 1.21080 1.23403 0.88298 0.99324 0.88937 1.22235 1.03087 0.90887 1.05574 1.20515 0.89260 0.98887 0.90209 1.20992 1.02304 0.90742 1.03891 1.19902 0.95421 0.91534 1.16520 1.18240 0.79717 0.82640 0.83835 1.90706 1.59157 1.64499 1.33370 1.46291 1.48489 1.31651 1.07404 1.18416 0.87211 0.81497 0.96100 0.98700 1.21868 0.98862 1.00988 0.97207 1.21507 1.23575 1.10884 1.02480 0.91342 1.25792 0.97402 0.94629 1.00582 1.70055 1.35780 1.13665 1.35943 0.85276 0.77820 0.78448 0.78664 1.18659 1.19975 1.20834 0.92610 0.92801 0.86923 0.91003 0.90623 0.77390 0.79494 0.89668 0.86340 0.93178 0.76556 0.96717 0.91279 0.93737 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 10.28 71.98 0.74 -2.90 16 2 C 0.06 1.75 6.03 71.98 0.43 2.18 16 3 O -0.33 -12.33 9.57 -87.20 -0.83 -13.17 16 4 C 0.34 11.76 7.51 85.13 0.64 12.40 16 5 N -0.55 -15.01 9.21 -307.99 -2.84 -17.84 16 6 C 0.16 2.89 11.17 84.71 0.95 3.83 16 7 C -0.20 -3.54 9.79 22.32 0.22 -3.32 16 8 C 0.02 0.52 5.95 -19.42 -0.12 0.40 16 9 C -0.12 -2.94 9.69 71.24 0.69 -2.25 16 10 C -0.23 -8.30 5.66 -19.91 -0.11 -8.41 16 11 C 0.57 26.31 5.38 86.69 0.47 26.78 16 12 O -0.60 -32.95 16.77 -4.00 -0.07 -33.02 16 13 N -0.69 -32.10 5.07 -449.30 -2.28 -34.38 16 14 C 0.27 14.86 2.56 44.24 0.11 14.97 16 15 H 0.00 -0.32 7.58 -2.39 -0.02 -0.34 16 16 C -0.13 -6.78 9.26 71.98 0.67 -6.12 16 17 C -0.55 -30.21 8.73 25.60 0.22 -29.99 16 18 H 0.07 3.60 7.74 -2.92 -0.02 3.58 16 19 C 0.02 0.89 5.30 84.66 0.45 1.33 16 20 N -0.92 -53.55 11.32 21.45 0.24 -53.31 16 21 Si 0.97 42.98 29.54 68.60 2.03 45.00 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 29 H 0.08 1.85 8.10 -2.39 -0.02 1.83 16 30 H 0.21 1.77 8.06 -2.91 -0.02 1.74 16 31 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.12 1.79 8.10 -2.39 -0.02 1.77 16 34 H 0.05 1.51 7.18 -2.38 -0.02 1.49 16 35 H 0.40 16.49 8.53 -92.71 -0.79 15.70 16 36 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.07 3.90 6.07 -2.38 -0.01 3.89 16 38 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -76.43 334.78 1.88 -74.55 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.27 Total: 23.25 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 5.36 Total: 8.91 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -4.87 Total: -105.53 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -0.90 Total: -46.18 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -76.43 1.88 -74.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433986964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.597 kcal (2) G-P(sol) polarization free energy of solvation -76.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds