Wall clock time and date at job start Tue Mar 31 2020 00:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47413 * 2 1 4 4 C 1.35430 * 116.99859 * 180.02562 * 3 2 1 5 5 N 1.32216 * 119.80961 * 359.97438 * 4 3 2 6 6 C 1.31888 * 121.81168 * 180.02562 * 5 4 3 7 7 C 1.38371 * 121.19549 * 359.97438 * 6 5 4 8 8 C 1.38328 * 119.46432 * 359.74623 * 7 6 5 9 9 C 1.50703 * 120.82837 * 180.27102 * 8 7 6 10 10 C 1.40042 * 118.34377 * 0.51942 * 8 7 6 11 11 C 1.47412 * 120.60571 * 179.73095 * 10 8 7 12 12 O 1.21629 * 120.00225 * 269.72563 * 11 10 8 13 13 N 1.34773 * 119.99993 * 89.72278 * 11 10 8 14 14 C 1.36898 * 120.00261 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00610 * 33.31959 * 14 13 11 16 16 C 1.39029 * 120.00059 * 213.05068 * 14 13 11 17 17 N 1.31388 * 119.99702 * 25.16041 * 16 14 13 18 18 Si 1.86799 * 120.00293 * 205.16144 * 16 14 13 19 19 H 1.48504 * 109.46868 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46939 * 119.99898 * 18 16 14 21 21 H 1.48494 * 109.47477 * 239.99874 * 18 16 14 22 22 C 1.46502 * 119.99705 * 359.97438 * 13 11 10 23 23 C 1.53000 * 109.47522 * 264.02939 * 22 13 11 24 24 H 1.09002 * 109.47250 * 59.99886 * 1 2 3 25 25 H 1.09000 * 109.47402 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46898 * 299.99958 * 1 2 3 27 27 H 1.09006 * 109.46898 * 240.00042 * 2 1 3 28 28 H 1.09002 * 109.47250 * 120.00114 * 2 1 3 29 29 H 1.07999 * 119.40422 * 180.02562 * 6 5 4 30 30 H 1.08004 * 120.26914 * 180.02562 * 7 6 5 31 31 H 1.08999 * 109.47524 * 270.25517 * 9 8 7 32 32 H 1.09001 * 109.46541 * 30.25073 * 9 8 7 33 33 H 1.08999 * 109.47011 * 150.25026 * 9 8 7 34 34 H 0.97001 * 119.99913 * 179.97438 * 17 16 14 35 35 H 1.09003 * 109.47469 * 24.03589 * 22 13 11 36 36 H 1.09009 * 109.46650 * 144.03171 * 22 13 11 37 37 H 1.08999 * 109.47162 * 180.02562 * 23 22 13 38 38 H 1.09002 * 109.47401 * 300.00226 * 23 22 13 39 39 H 1.09004 * 109.46510 * 60.00484 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3490 1.5246 -0.0005 5 7 4.1508 0.4733 -0.0005 6 6 5.4636 0.6003 -0.0005 7 6 6.0631 1.8474 -0.0011 8 6 5.2724 2.9824 -0.0070 9 6 5.8928 4.3558 -0.0139 10 6 3.8810 2.8234 -0.0010 11 6 2.9914 3.9988 -0.0009 12 8 2.6244 4.4838 1.0524 13 7 2.5846 4.5361 -1.1681 14 6 1.7588 5.6280 -1.1680 15 1 1.8429 6.3688 -0.3867 16 6 0.8155 5.7862 -2.1770 17 7 0.3604 4.7355 -2.8214 18 14 0.1951 7.4924 -2.6167 19 1 0.8597 8.4991 -1.7505 20 1 0.5072 7.7812 -4.0395 21 1 -1.2741 7.5535 -2.4099 22 6 3.0270 3.9524 -2.4368 23 6 4.2462 4.7190 -2.9534 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 6.0819 -0.2852 -0.0009 30 1 7.1396 1.9339 -0.0015 31 1 6.0464 4.6903 1.0121 32 1 6.8514 4.3187 -0.5313 33 1 5.2293 5.0516 -0.5275 34 1 -0.2981 4.8458 -3.5251 35 1 3.2939 2.9069 -2.2823 36 1 2.2206 4.0174 -3.1674 37 1 4.5751 4.2849 -3.8976 38 1 3.9793 5.7645 -3.1079 39 1 5.0525 4.6539 -2.2227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434118041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:05 Heat of formation + Delta-G solvation = -33.079749 kcal Electronic energy + Delta-G solvation = -22854.385180 eV Core-core repulsion = 19569.906481 eV Total energy + Delta-G solvation = -3284.478698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.48747 -38.23782 -37.59994 -34.91478 -33.52469 -32.00832 -31.58180 -29.66127 -29.45740 -27.78208 -25.29903 -23.52139 -23.18766 -22.07902 -21.24081 -19.36508 -17.67784 -16.87060 -16.70149 -16.25117 -15.82135 -15.08857 -14.79195 -14.36653 -13.76513 -13.70049 -13.37846 -13.14336 -13.09819 -12.59740 -12.55488 -12.32381 -12.21976 -11.87799 -11.78035 -11.58239 -11.44461 -11.15999 -11.05580 -10.89675 -10.43436 -10.34816 -10.28612 -9.99553 -9.55015 -9.20864 -8.94898 -8.44002 -7.99018 -7.45395 -6.29521 -3.89968 1.37784 1.57440 3.15628 3.27648 3.34214 3.38676 3.83406 3.99685 4.18927 4.54602 4.89135 4.97431 5.04221 5.23430 5.30193 5.37632 5.43075 5.50624 5.63497 5.70294 5.85107 5.88840 5.96391 5.99657 6.13712 6.16571 6.23793 6.31432 6.35349 6.39486 6.59826 6.61506 6.77285 6.93942 7.32307 7.63477 7.67911 8.12597 8.26201 8.53473 9.19402 9.43400 10.03891 10.71898 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.007582 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.777296 B = 3692.006434 C = 4689.975129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.069 3.931 3 O -0.284 6.284 4 C 0.349 3.651 5 N -0.548 5.548 6 C 0.136 3.864 7 C -0.219 4.219 8 C 0.011 3.989 9 C -0.124 4.124 10 C -0.159 4.159 11 C 0.510 3.490 12 O -0.574 6.574 13 N -0.423 5.423 14 C -0.310 4.310 15 H 0.094 0.906 16 C 0.039 3.961 17 N -0.859 5.859 18 Si 0.913 3.087 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.282 1.282 22 C 0.095 3.905 23 C -0.167 4.167 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.156 0.844 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.267 0.733 35 H 0.042 0.958 36 H 0.114 0.886 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.720 -7.645 -0.247 11.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.007 4.007 3 O -0.190 6.190 4 C 0.170 3.830 5 N -0.273 5.273 6 C -0.020 4.020 7 C -0.240 4.240 8 C 0.003 3.997 9 C -0.180 4.180 10 C -0.165 4.165 11 C 0.297 3.703 12 O -0.458 6.458 13 N -0.141 5.141 14 C -0.437 4.437 15 H 0.112 0.888 16 C -0.166 4.166 17 N -0.496 5.496 18 Si 0.740 3.260 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.208 1.208 22 C -0.029 4.029 23 C -0.225 4.225 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.173 0.827 30 H 0.153 0.847 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.131 0.869 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.746 -8.057 0.097 11.177 hybrid contribution 0.118 1.082 -0.398 1.159 sum 7.864 -6.975 -0.301 10.516 Atomic orbital electron populations 1.21796 0.93096 1.02116 1.04037 1.22557 0.94983 0.81388 1.01735 1.86410 1.16179 1.29857 1.86551 1.19769 0.84239 0.88566 0.90441 1.67304 1.06492 1.32707 1.20838 1.22326 0.89221 0.96992 0.93455 1.21688 1.00777 0.92691 1.08797 1.20188 0.91004 0.96557 0.91933 1.21003 1.00873 0.92843 1.03295 1.20207 0.94230 0.93719 1.08385 1.17684 0.84017 0.83328 0.85283 1.90628 1.60574 1.63340 1.31246 1.43411 1.41122 1.26693 1.02826 1.19446 1.13712 0.98475 1.12094 0.88794 1.25319 0.94962 0.98319 0.98022 1.69945 1.27324 1.28655 1.23683 0.86086 0.78527 0.83069 0.78349 1.19116 1.20603 1.20794 1.21580 0.97540 0.94126 0.89693 1.22268 0.98715 1.01836 0.99715 0.91113 0.90794 0.91654 0.91930 0.92127 0.82723 0.84749 0.90186 0.90913 0.89623 0.92319 0.93992 0.86886 0.93375 0.92181 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 37.16 0.38 -1.88 16 2 C 0.07 1.15 6.03 37.16 0.22 1.38 16 3 O -0.28 -6.26 9.58 -17.98 -0.17 -6.43 16 4 C 0.35 7.35 7.12 -16.59 -0.12 7.23 16 5 N -0.55 -9.75 9.21 -12.96 -0.12 -9.87 16 6 C 0.14 1.95 11.17 -17.48 -0.20 1.75 16 7 C -0.22 -3.09 9.79 -39.50 -0.39 -3.48 16 8 C 0.01 0.19 5.81 -103.91 -0.60 -0.41 16 9 C -0.12 -1.92 8.61 36.01 0.31 -1.61 16 10 C -0.16 -3.48 3.85 -104.69 -0.40 -3.88 16 11 C 0.51 13.35 5.23 -12.53 -0.07 13.28 16 12 O -0.57 -17.14 16.92 5.25 0.09 -17.05 16 13 N -0.42 -11.05 2.56 -116.03 -0.30 -11.35 16 14 C -0.31 -8.68 8.93 -15.00 -0.13 -8.81 16 15 H 0.09 2.75 7.71 -52.49 -0.40 2.35 16 16 C 0.04 1.03 4.96 -17.45 -0.09 0.94 16 17 N -0.86 -23.29 11.32 55.50 0.63 -22.66 16 18 Si 0.91 20.54 29.62 -169.99 -5.04 15.50 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.09 2.18 5.68 -4.04 -0.02 2.16 16 23 C -0.17 -3.18 10.14 37.16 0.38 -2.80 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 28 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 29 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.09 1.55 5.40 -51.93 -0.28 1.27 16 34 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.04 0.94 6.36 -51.93 -0.33 0.61 16 36 H 0.11 2.85 5.35 -51.92 -0.28 2.57 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.86 4.81 -51.93 -0.25 0.61 16 LS Contribution 325.31 15.07 4.90 4.90 Total: -1.00 -33.23 325.31 -6.05 -39.28 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.32 Total: 3.82 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -0.72 Total: 3.87 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.21 Total: -43.88 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.08 Total: -23.48 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.04 Total: 15.50 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.23 -6.05 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434118041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.200 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds