Wall clock time and date at job start Tue Mar 31 2020 00:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47413 * 2 1 4 4 C 1.35430 * 116.99859 * 180.02562 * 3 2 1 5 5 N 1.32216 * 119.80961 * 359.97438 * 4 3 2 6 6 C 1.31888 * 121.81168 * 180.02562 * 5 4 3 7 7 C 1.38371 * 121.19549 * 359.97438 * 6 5 4 8 8 C 1.38328 * 119.46432 * 359.74623 * 7 6 5 9 9 C 1.50703 * 120.82837 * 180.27102 * 8 7 6 10 10 C 1.40042 * 118.34377 * 0.51942 * 8 7 6 11 11 C 1.47412 * 120.60571 * 179.73095 * 10 8 7 12 12 O 1.21629 * 120.00225 * 269.72563 * 11 10 8 13 13 N 1.34773 * 119.99993 * 89.72278 * 11 10 8 14 14 C 1.36898 * 120.00261 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00610 * 33.31959 * 14 13 11 16 16 C 1.39029 * 120.00059 * 213.05068 * 14 13 11 17 17 N 1.31388 * 119.99702 * 25.16041 * 16 14 13 18 18 Si 1.86799 * 120.00293 * 205.16144 * 16 14 13 19 19 H 1.48504 * 109.46868 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46939 * 119.99898 * 18 16 14 21 21 H 1.48494 * 109.47477 * 239.99874 * 18 16 14 22 22 C 1.46502 * 119.99705 * 359.97438 * 13 11 10 23 23 C 1.53000 * 109.47522 * 264.02939 * 22 13 11 24 24 H 1.09002 * 109.47250 * 59.99886 * 1 2 3 25 25 H 1.09000 * 109.47402 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46898 * 299.99958 * 1 2 3 27 27 H 1.09006 * 109.46898 * 240.00042 * 2 1 3 28 28 H 1.09002 * 109.47250 * 120.00114 * 2 1 3 29 29 H 1.07999 * 119.40422 * 180.02562 * 6 5 4 30 30 H 1.08004 * 120.26914 * 180.02562 * 7 6 5 31 31 H 1.08999 * 109.47524 * 270.25517 * 9 8 7 32 32 H 1.09001 * 109.46541 * 30.25073 * 9 8 7 33 33 H 1.08999 * 109.47011 * 150.25026 * 9 8 7 34 34 H 0.97001 * 119.99913 * 179.97438 * 17 16 14 35 35 H 1.09003 * 109.47469 * 24.03589 * 22 13 11 36 36 H 1.09009 * 109.46650 * 144.03171 * 22 13 11 37 37 H 1.08999 * 109.47162 * 180.02562 * 23 22 13 38 38 H 1.09002 * 109.47401 * 300.00226 * 23 22 13 39 39 H 1.09004 * 109.46510 * 60.00484 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3490 1.5246 -0.0005 5 7 4.1508 0.4733 -0.0005 6 6 5.4636 0.6003 -0.0005 7 6 6.0631 1.8474 -0.0011 8 6 5.2724 2.9824 -0.0070 9 6 5.8928 4.3558 -0.0139 10 6 3.8810 2.8234 -0.0010 11 6 2.9914 3.9988 -0.0009 12 8 2.6244 4.4838 1.0524 13 7 2.5846 4.5361 -1.1681 14 6 1.7588 5.6280 -1.1680 15 1 1.8429 6.3688 -0.3867 16 6 0.8155 5.7862 -2.1770 17 7 0.3604 4.7355 -2.8214 18 14 0.1951 7.4924 -2.6167 19 1 0.8597 8.4991 -1.7505 20 1 0.5072 7.7812 -4.0395 21 1 -1.2741 7.5535 -2.4099 22 6 3.0270 3.9524 -2.4368 23 6 4.2462 4.7190 -2.9534 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 6.0819 -0.2852 -0.0009 30 1 7.1396 1.9339 -0.0015 31 1 6.0464 4.6903 1.0121 32 1 6.8514 4.3187 -0.5313 33 1 5.2293 5.0516 -0.5275 34 1 -0.2981 4.8458 -3.5251 35 1 3.2939 2.9069 -2.2823 36 1 2.2206 4.0174 -3.1674 37 1 4.5751 4.2849 -3.8976 38 1 3.9793 5.7645 -3.1079 39 1 5.0525 4.6539 -2.2227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434118041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:04 Heat of formation + Delta-G solvation = -56.741511 kcal Electronic energy + Delta-G solvation = -22855.411231 eV Core-core repulsion = 19569.906481 eV Total energy + Delta-G solvation = -3285.504749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -41.93264 -40.05015 -39.05125 -36.93610 -34.92142 -33.86930 -33.00405 -31.26801 -31.02395 -29.08405 -27.20891 -25.06070 -24.50551 -23.79831 -22.61079 -21.11660 -19.08054 -18.83874 -18.20193 -17.96042 -17.27067 -17.01017 -16.27914 -15.95234 -15.27164 -15.13586 -15.06930 -14.75864 -14.60943 -14.07540 -13.98516 -13.64865 -13.56927 -13.48754 -13.36032 -13.18188 -12.89921 -12.77930 -12.63564 -12.47131 -12.28803 -12.07054 -11.78825 -11.73459 -11.10817 -10.95687 -10.49178 -10.27308 -9.50518 -9.39988 -8.34550 -6.04820 0.04146 0.26273 1.33552 1.40293 1.55129 1.91354 2.06347 2.28757 2.70047 2.98090 3.03347 3.38656 3.77777 3.92523 3.95897 4.02609 4.14198 4.24218 4.26929 4.37025 4.53384 4.61142 4.61257 4.66944 4.76451 4.78539 4.87108 4.89859 4.96469 5.10813 5.16118 5.26454 5.33583 5.43463 5.55449 5.58682 6.16235 6.32064 6.50219 6.82359 7.13329 7.42089 8.03222 8.66048 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.007582 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.777296 B = 3692.006434 C = 4689.975129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.065 3.935 3 O -0.329 6.329 4 C 0.327 3.673 5 N -0.551 5.551 6 C 0.145 3.855 7 C -0.198 4.198 8 C 0.007 3.993 9 C -0.123 4.123 10 C -0.202 4.202 11 C 0.506 3.494 12 O -0.633 6.633 13 N -0.429 5.429 14 C -0.347 4.347 15 H 0.066 0.934 16 C 0.007 3.993 17 N -0.881 5.881 18 Si 0.981 3.019 19 H -0.269 1.269 20 H -0.260 1.260 21 H -0.279 1.279 22 C 0.099 3.901 23 C -0.157 4.157 24 H 0.048 0.952 25 H 0.115 0.885 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.209 0.791 30 H 0.188 0.812 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.052 0.948 34 H 0.274 0.726 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.460 -9.039 -1.415 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.010 4.010 3 O -0.236 6.236 4 C 0.149 3.851 5 N -0.276 5.276 6 C -0.011 4.011 7 C -0.217 4.217 8 C -0.001 4.001 9 C -0.179 4.179 10 C -0.208 4.208 11 C 0.294 3.706 12 O -0.521 6.521 13 N -0.146 5.146 14 C -0.475 4.475 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.517 5.517 18 Si 0.804 3.196 19 H -0.193 1.193 20 H -0.185 1.185 21 H -0.205 1.205 22 C -0.024 4.024 23 C -0.215 4.215 24 H 0.068 0.932 25 H 0.134 0.866 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.226 0.774 30 H 0.205 0.795 31 H 0.100 0.900 32 H 0.137 0.863 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.495 -9.475 -1.113 14.183 hybrid contribution -0.665 1.389 -0.011 1.540 sum 9.830 -8.085 -1.123 12.778 Atomic orbital electron populations 1.21829 0.92100 1.04249 1.02287 1.22807 0.95800 0.79786 1.02576 1.86356 1.17568 1.32634 1.87034 1.19866 0.84302 0.89067 0.91876 1.67416 1.07969 1.31191 1.21052 1.23346 0.88285 0.99248 0.90216 1.22208 1.02912 0.90935 1.05679 1.20557 0.89495 0.98818 0.91263 1.21057 1.02046 0.91123 1.03660 1.20016 0.95546 0.92117 1.13158 1.18334 0.84005 0.83917 0.84300 1.90549 1.62991 1.65527 1.33084 1.43612 1.40690 1.26232 1.04042 1.19400 1.15798 0.99479 1.12809 0.91589 1.26123 0.94433 1.02111 0.97012 1.70023 1.27436 1.30501 1.23787 0.85086 0.77713 0.78006 0.78770 1.19312 1.18478 1.20457 1.21575 0.98310 0.94746 0.87770 1.22171 0.97271 1.00534 1.01477 0.93237 0.86638 0.92909 0.91081 0.90997 0.77442 0.79517 0.89976 0.86331 0.92913 0.91591 0.93918 0.89269 0.90186 0.93417 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 10.28 71.98 0.74 -3.71 16 2 C 0.06 2.20 6.03 71.98 0.43 2.64 16 3 O -0.33 -15.17 9.58 -87.26 -0.84 -16.01 16 4 C 0.33 13.95 7.12 85.15 0.61 14.55 16 5 N -0.55 -18.52 9.21 -307.94 -2.83 -21.35 16 6 C 0.14 3.48 11.17 84.72 0.95 4.43 16 7 C -0.20 -4.62 9.79 22.32 0.22 -4.40 16 8 C 0.01 0.22 5.81 -19.40 -0.11 0.11 16 9 C -0.12 -3.60 8.61 71.24 0.61 -2.99 16 10 C -0.20 -9.02 3.85 -19.91 -0.08 -9.10 16 11 C 0.51 28.05 5.23 86.66 0.45 28.50 16 12 O -0.63 -40.77 16.92 -4.12 -0.07 -40.83 16 13 N -0.43 -23.67 2.56 -639.25 -1.63 -25.30 16 14 C -0.35 -20.61 8.93 84.09 0.75 -19.86 16 15 H 0.07 4.18 7.71 -2.91 -0.02 4.16 16 16 C 0.01 0.36 4.96 84.95 0.42 0.78 16 17 N -0.88 -49.19 11.32 21.68 0.25 -48.94 16 18 Si 0.98 43.06 29.62 68.60 2.03 45.09 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.10 4.71 5.68 86.38 0.49 5.20 16 23 C -0.16 -5.87 10.14 71.98 0.73 -5.14 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.07 2.23 8.10 -2.38 -0.02 2.21 16 28 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 29 H 0.21 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.19 2.45 8.06 -2.91 -0.02 2.42 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.12 2.31 8.10 -2.39 -0.02 2.29 16 33 H 0.05 1.91 5.40 -2.39 -0.01 1.90 16 34 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 35 H 0.04 1.98 6.36 -2.39 -0.02 1.96 16 36 H 0.09 4.65 5.35 -2.38 -0.01 4.64 16 37 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.06 2.22 4.81 -2.38 -0.01 2.21 16 Total: -1.00 -80.35 325.31 4.17 -76.18 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 1.05 Total: 20.16 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 6.21 Total: 11.01 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -4.22 Total: -95.60 kcal Atomic # 8 Polarization: -55.94 SS G_CDS: -0.91 Total: -56.84 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -80.35 4.17 -76.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434118041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.437 kcal (2) G-P(sol) polarization free energy of solvation -80.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds