Wall clock time and date at job start Tue Mar 31 2020 00:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 C 1.34781 * 119.99832 * 269.99624 * 3 2 1 14 14 O 1.21609 * 120.00184 * 180.02562 * 13 3 2 15 15 C 1.47398 * 119.99768 * 0.02562 * 13 3 2 16 16 C 1.37359 * 128.56596 * 270.01957 * 15 13 3 17 17 C 1.50705 * 126.82885 * 0.02562 * 16 15 13 18 18 O 1.33494 * 106.34632 * 179.97438 * 16 15 13 19 19 N 1.20663 * 113.15331 * 0.02562 * 18 16 15 20 20 C 1.30018 * 112.29992 * 359.71122 * 19 18 16 21 21 C 1.50697 * 127.33341 * 180.29769 * 20 19 18 22 22 C 1.52998 * 117.49867 * 8.77574 * 21 20 19 23 23 C 1.52994 * 60.00020 * 252.50503 * 22 21 20 24 24 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 25 25 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 26 26 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 28 28 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 29 29 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 30 30 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 31 31 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47381 * 89.99568 * 17 16 15 33 33 H 1.08999 * 109.46910 * 209.99916 * 17 16 15 34 34 H 1.09007 * 109.46737 * 329.99673 * 17 16 15 35 35 H 1.09003 * 115.54570 * 154.47903 * 21 20 19 36 36 H 1.09005 * 117.49868 * 359.97438 * 22 21 20 37 37 H 1.09001 * 117.49905 * 145.01494 * 22 21 20 38 38 H 1.08996 * 117.50326 * 252.51059 * 23 22 21 39 39 H 1.09002 * 117.51896 * 107.47795 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 1 0.1156 2.7248 1.0961 7 6 0.9948 3.5050 2.8778 8 7 2.0797 3.5748 3.6179 9 14 -0.5620 4.3850 3.4173 10 1 -1.6347 4.1512 2.4173 11 1 -0.9944 3.8612 4.7379 12 1 -0.2949 5.8418 3.5259 13 6 2.2430 2.0166 -1.1673 14 8 2.6487 3.1630 -1.1673 15 6 1.9968 1.3218 -2.4437 16 6 2.8662 0.5595 -3.1853 17 6 4.3041 0.2512 -2.8559 18 8 2.1839 0.1451 -4.2552 19 7 1.0434 0.5389 -4.2723 20 6 0.7579 1.2689 -3.2350 21 6 -0.5608 1.9236 -2.9132 22 6 -1.7626 1.5583 -3.7866 23 6 -1.1111 2.9361 -3.9196 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.0644 2.7986 1.1383 30 1 2.5506 1.3453 2.0283 31 1 2.0715 4.0835 4.4438 32 1 4.3533 -0.6620 -2.2628 33 1 4.8673 0.1157 -3.7792 34 1 4.7317 1.0772 -2.2873 35 1 -0.7457 2.1134 -1.8559 36 1 -1.5995 0.8446 -4.5943 37 1 -2.7386 1.5075 -3.3040 38 1 -1.6583 3.7919 -3.5244 39 1 -0.5191 3.1291 -4.8142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448773134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:37 Heat of formation + Delta-G solvation = 46.477198 kcal Electronic energy + Delta-G solvation = -22492.701781 eV Core-core repulsion = 19211.672931 eV Total energy + Delta-G solvation = -3281.028850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 5.23 seconds Orbital eigenvalues (eV) -44.70188 -39.01088 -37.42824 -35.32340 -33.63169 -32.77003 -32.58036 -30.03613 -28.19892 -27.20676 -24.80531 -23.99594 -22.76284 -22.45194 -22.04267 -19.56201 -18.67304 -17.64582 -17.09058 -16.61077 -16.20988 -15.62008 -15.22426 -14.66669 -14.30621 -14.17830 -13.47228 -13.29199 -13.16296 -13.03727 -12.64956 -12.26872 -12.18038 -11.93800 -11.62660 -11.52721 -11.46275 -11.26136 -11.15233 -10.90981 -10.71960 -10.56945 -10.36112 -10.09941 -9.61989 -9.44606 -9.33006 -9.02471 -8.46633 -7.76614 -6.08176 -4.12158 1.48196 2.02870 2.96646 3.15511 3.27091 3.35218 3.38349 3.80744 3.85374 4.13373 4.40868 4.41921 4.84414 4.93301 4.96402 5.06370 5.22540 5.27364 5.34599 5.41425 5.46964 5.59637 5.62728 5.73042 5.76269 5.84251 5.90277 6.00149 6.08130 6.11937 6.15088 6.34823 6.75183 6.99516 7.36093 7.47243 7.88030 8.18348 8.29393 8.36694 8.82248 8.98157 9.52625 11.00214 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.006340 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.903000 B = 4415.594429 C = 5241.904386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.114 3.886 3 N -0.584 5.584 4 C 0.245 3.755 5 C -0.523 4.523 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.585 3.415 14 O -0.526 6.526 15 C -0.218 4.218 16 C -0.004 4.004 17 C -0.074 4.074 18 O 0.092 5.908 19 N -0.361 5.361 20 C 0.088 3.912 21 C -0.089 4.089 22 C -0.163 4.163 23 C -0.158 4.158 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 -9.168 -12.213 15.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.010 4.010 3 N -0.315 5.315 4 C 0.127 3.873 5 C -0.562 4.562 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.369 3.631 14 O -0.403 6.403 15 C -0.226 4.226 16 C -0.067 4.067 17 C -0.132 4.132 18 O 0.030 5.970 19 N -0.067 5.067 20 C -0.074 4.074 21 C -0.108 4.108 22 C -0.200 4.200 23 C -0.196 4.196 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.721 -8.904 -13.064 15.903 hybrid contribution -0.679 0.830 1.144 1.568 sum -2.400 -8.074 -11.920 14.595 Atomic orbital electron populations 1.22313 0.96226 1.01111 1.03585 1.21354 0.94819 0.83437 1.01393 1.48232 1.62735 1.13320 1.07193 1.19376 0.97771 0.92564 0.77607 1.21447 0.97418 1.31083 1.06214 0.92212 1.24924 0.96458 0.96244 0.96434 1.69933 1.27418 1.41620 1.14355 0.86478 0.83185 0.79631 0.78358 1.19792 1.20968 1.20867 1.16837 0.78978 0.85435 0.81821 1.90801 1.46067 1.16657 1.86749 1.22215 0.93667 1.05893 1.00790 1.24517 0.97025 0.97191 0.87993 1.20408 0.85360 1.04115 1.03281 1.84478 1.16911 1.56940 1.38714 1.73487 0.96194 1.15574 1.21473 1.23668 0.95329 0.97738 0.90625 1.20348 0.88075 1.03549 0.98851 1.23011 0.96062 0.98836 1.02079 1.23019 1.02981 0.93377 1.00239 0.90462 0.92787 0.92866 0.92446 0.90481 0.93709 0.94685 0.92750 0.89014 0.89490 0.88665 0.84882 0.88132 0.87910 0.87669 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 10.24 37.16 0.38 -2.40 16 2 C 0.11 1.89 5.99 -4.04 -0.02 1.86 16 3 N -0.58 -12.17 2.46 -176.34 -0.43 -12.61 16 4 C 0.25 6.20 5.20 -5.19 -0.03 6.17 16 5 C -0.52 -14.29 8.92 -34.44 -0.31 -14.60 16 6 H 0.06 1.63 7.42 -52.49 -0.39 1.24 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 9 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.59 12.49 7.46 -12.53 -0.09 12.39 16 14 O -0.53 -13.52 16.69 5.27 0.09 -13.43 16 15 C -0.22 -3.84 4.47 -102.89 -0.46 -4.30 16 16 C 0.00 -0.06 7.25 -34.63 -0.25 -0.31 16 17 C -0.07 -0.77 10.33 36.01 0.37 -0.40 16 18 O 0.09 1.34 11.06 18.65 0.21 1.55 16 19 N -0.36 -5.71 11.71 34.78 0.41 -5.31 16 20 C 0.09 1.46 6.61 -79.77 -0.53 0.93 16 21 C -0.09 -1.37 5.37 -91.78 -0.49 -1.86 16 22 C -0.16 -1.99 10.16 -26.74 -0.27 -2.26 16 23 C -0.16 -2.08 10.23 -26.74 -0.27 -2.35 16 24 H 0.08 1.41 7.26 -51.93 -0.38 1.03 16 25 H 0.05 0.87 5.11 -51.93 -0.27 0.61 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.84 6.65 -51.93 -0.35 0.49 16 28 H 0.08 1.20 7.89 -51.93 -0.41 0.79 16 29 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 30 H 0.04 0.89 7.89 -51.93 -0.41 0.48 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 35 H 0.13 2.21 6.85 -51.93 -0.36 1.86 16 36 H 0.10 1.23 7.97 -51.93 -0.41 0.81 16 37 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 333.50 15.07 5.03 5.03 Total: -1.00 -32.31 333.50 -6.51 -38.82 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.44 Total: 0.28 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.07 Total: -5.52 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.71 Total: -43.16 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.29 Total: -11.89 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.31 -6.51 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448773134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.298 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.23 seconds