Wall clock time and date at job start Tue Mar 31 2020 00:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 C 1.34781 * 119.99832 * 269.99624 * 3 2 1 14 14 O 1.21609 * 120.00184 * 180.02562 * 13 3 2 15 15 C 1.47398 * 119.99768 * 0.02562 * 13 3 2 16 16 C 1.37359 * 128.56596 * 270.01957 * 15 13 3 17 17 C 1.50705 * 126.82885 * 0.02562 * 16 15 13 18 18 O 1.33494 * 106.34632 * 179.97438 * 16 15 13 19 19 N 1.20663 * 113.15331 * 0.02562 * 18 16 15 20 20 C 1.30018 * 112.29992 * 359.71122 * 19 18 16 21 21 C 1.50697 * 127.33341 * 180.29769 * 20 19 18 22 22 C 1.52998 * 117.49867 * 8.77574 * 21 20 19 23 23 C 1.52994 * 60.00020 * 252.50503 * 22 21 20 24 24 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 25 25 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 26 26 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 28 28 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 29 29 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 30 30 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 31 31 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47381 * 89.99568 * 17 16 15 33 33 H 1.08999 * 109.46910 * 209.99916 * 17 16 15 34 34 H 1.09007 * 109.46737 * 329.99673 * 17 16 15 35 35 H 1.09003 * 115.54570 * 154.47903 * 21 20 19 36 36 H 1.09005 * 117.49868 * 359.97438 * 22 21 20 37 37 H 1.09001 * 117.49905 * 145.01494 * 22 21 20 38 38 H 1.08996 * 117.50326 * 252.51059 * 23 22 21 39 39 H 1.09002 * 117.51896 * 107.47795 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 1 0.1156 2.7248 1.0961 7 6 0.9948 3.5050 2.8778 8 7 2.0797 3.5748 3.6179 9 14 -0.5620 4.3850 3.4173 10 1 -1.6347 4.1512 2.4173 11 1 -0.9944 3.8612 4.7379 12 1 -0.2949 5.8418 3.5259 13 6 2.2430 2.0166 -1.1673 14 8 2.6487 3.1630 -1.1673 15 6 1.9968 1.3218 -2.4437 16 6 2.8662 0.5595 -3.1853 17 6 4.3041 0.2512 -2.8559 18 8 2.1839 0.1451 -4.2552 19 7 1.0434 0.5389 -4.2723 20 6 0.7579 1.2689 -3.2350 21 6 -0.5608 1.9236 -2.9132 22 6 -1.7626 1.5583 -3.7866 23 6 -1.1111 2.9361 -3.9196 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.0644 2.7986 1.1383 30 1 2.5506 1.3453 2.0283 31 1 2.0715 4.0835 4.4438 32 1 4.3533 -0.6620 -2.2628 33 1 4.8673 0.1157 -3.7792 34 1 4.7317 1.0772 -2.2873 35 1 -0.7457 2.1134 -1.8559 36 1 -1.5995 0.8446 -4.5943 37 1 -2.7386 1.5075 -3.3040 38 1 -1.6583 3.7919 -3.5244 39 1 -0.5191 3.1291 -4.8142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448773134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:32 Heat of formation + Delta-G solvation = 27.356071 kcal Electronic energy + Delta-G solvation = -22493.530936 eV Core-core repulsion = 19211.672931 eV Total energy + Delta-G solvation = -3281.858004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -45.93281 -40.69649 -38.52888 -37.05237 -35.10734 -34.47465 -33.86762 -31.61121 -29.67127 -28.71605 -26.31762 -25.30572 -24.44999 -23.63839 -23.32870 -20.91927 -20.01136 -18.89779 -18.69343 -18.44466 -17.64099 -17.29522 -16.51206 -16.24612 -15.89461 -15.61661 -14.84026 -14.57495 -14.52563 -14.12960 -14.06959 -13.74154 -13.70698 -13.33986 -13.19448 -12.98216 -12.76481 -12.67620 -12.54631 -12.53151 -12.31069 -12.12356 -11.84739 -11.64585 -11.46176 -11.05318 -10.64462 -10.54158 -10.33125 -9.56637 -8.22031 -6.34199 0.28960 0.76547 1.35757 1.37853 1.44379 1.50605 1.84680 2.28384 2.42372 2.76166 2.89752 3.08864 3.23830 3.63556 3.77565 3.87781 3.96882 4.03350 4.09397 4.36575 4.40420 4.52158 4.60798 4.62473 4.66118 4.69420 4.85112 4.87941 4.94875 4.99481 5.04365 5.08016 5.11856 5.21401 5.42385 5.57610 5.80154 6.06143 6.59705 6.73468 7.16425 7.19685 7.38093 8.85929 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.006340 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.903000 B = 4415.594429 C = 5241.904386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.583 5.583 4 C 0.260 3.740 5 C -0.533 4.533 6 H 0.055 0.945 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.283 1.283 13 C 0.590 3.410 14 O -0.584 6.584 15 C -0.259 4.259 16 C 0.027 3.973 17 C -0.077 4.077 18 O 0.102 5.898 19 N -0.365 5.365 20 C 0.087 3.913 21 C -0.120 4.120 22 C -0.134 4.134 23 C -0.157 4.157 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.003 0.997 30 H 0.032 0.968 31 H 0.266 0.734 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.473 -10.884 -13.466 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.013 4.013 3 N -0.313 5.313 4 C 0.140 3.860 5 C -0.572 4.572 6 H 0.073 0.927 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.209 1.209 13 C 0.377 3.623 14 O -0.464 6.464 15 C -0.266 4.266 16 C -0.036 4.036 17 C -0.134 4.134 18 O 0.041 5.959 19 N -0.071 5.071 20 C -0.074 4.074 21 C -0.139 4.139 22 C -0.171 4.171 23 C -0.195 4.195 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.021 0.979 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.847 -10.676 -14.334 18.099 hybrid contribution -0.264 1.314 1.493 2.006 sum -3.111 -9.362 -12.841 16.194 Atomic orbital electron populations 1.22242 0.95556 1.02822 1.02015 1.21637 0.95363 0.81072 1.03192 1.48180 1.62468 1.14820 1.05804 1.18886 0.95839 0.91794 0.79502 1.21675 0.97780 1.31418 1.06301 0.92694 1.25768 0.99617 0.96947 0.96543 1.70039 1.29382 1.42437 1.14849 0.85471 0.79446 0.78111 0.78450 1.19114 1.19530 1.20924 1.17218 0.77414 0.84756 0.82946 1.90753 1.48610 1.19325 1.87755 1.21808 0.95694 1.08861 1.00273 1.25093 0.97749 0.94467 0.86328 1.20683 0.82896 1.04595 1.05248 1.84483 1.16623 1.56484 1.38323 1.73470 0.96708 1.15787 1.21136 1.23801 0.95448 0.97700 0.90472 1.20354 0.89163 1.06006 0.98421 1.23087 0.95552 0.97787 1.00702 1.23113 1.02853 0.94243 0.99321 0.93226 0.93133 0.89437 0.89759 0.89413 0.97887 0.95053 0.92457 0.86240 0.86076 0.90189 0.86946 0.87717 0.85807 0.86682 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 10.24 71.98 0.74 -4.47 16 2 C 0.11 3.52 5.99 86.38 0.52 4.04 16 3 N -0.58 -24.88 2.46 -830.07 -2.04 -26.92 16 4 C 0.26 13.72 5.20 85.63 0.45 14.17 16 5 C -0.53 -30.02 8.92 25.60 0.23 -29.79 16 6 H 0.05 3.08 7.42 -2.91 -0.02 3.06 16 7 C 0.01 0.58 5.46 84.66 0.46 1.04 16 8 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 9 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 C 0.59 25.91 7.46 86.65 0.65 26.56 16 14 O -0.58 -31.60 16.69 -4.06 -0.07 -31.66 16 15 C -0.26 -9.01 4.47 -18.74 -0.08 -9.09 16 16 C 0.03 0.73 7.25 25.48 0.18 0.91 16 17 C -0.08 -1.39 10.33 71.24 0.74 -0.66 16 18 O 0.10 2.72 11.06 76.97 0.85 3.57 16 19 N -0.36 -10.84 11.71 -44.77 -0.52 -11.36 16 20 C 0.09 2.82 6.61 45.15 0.30 3.11 16 21 C -0.12 -3.63 5.37 -11.54 -0.06 -3.69 16 22 C -0.13 -3.00 10.16 30.59 0.31 -2.69 16 23 C -0.16 -3.97 10.23 30.59 0.31 -3.66 16 24 H 0.05 1.80 7.26 -2.39 -0.02 1.78 16 25 H 0.05 1.60 5.11 -2.39 -0.01 1.59 16 26 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 2.27 6.65 -2.39 -0.02 2.25 16 28 H 0.09 2.62 7.89 -2.39 -0.02 2.60 16 29 H 0.00 0.18 7.42 -2.39 -0.02 0.17 16 30 H 0.03 1.65 7.89 -2.39 -0.02 1.64 16 31 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.77 8.11 -2.38 -0.02 1.75 16 35 H 0.11 3.83 6.85 -2.39 -0.02 3.81 16 36 H 0.10 2.28 7.97 -2.38 -0.02 2.26 16 37 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.11 2.62 8.14 -2.39 -0.02 2.61 16 39 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -72.82 333.50 6.32 -66.50 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.06 Total: 12.44 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 4.73 Total: -4.20 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -2.28 Total: -93.09 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: 0.78 Total: -28.09 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -72.82 6.32 -66.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448773134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.853 kcal (2) G-P(sol) polarization free energy of solvation -72.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds