Wall clock time and date at job start Tue Mar 31 2020 00:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47289 * 2 1 4 4 C 1.46501 * 119.99892 * 265.11077 * 3 2 1 5 5 C 1.50708 * 109.47166 * 270.00067 * 4 3 2 6 6 H 1.07994 * 119.99756 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99921 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00002 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00092 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46982 * 90.00230 * 9 7 5 11 11 H 1.48495 * 109.47108 * 210.00270 * 9 7 5 12 12 H 1.48502 * 109.47032 * 330.00467 * 9 7 5 13 13 C 1.34776 * 120.00409 * 85.11311 * 3 2 1 14 14 O 1.21275 * 120.00387 * 185.44469 * 13 3 2 15 15 C 1.50706 * 119.99742 * 5.44815 * 13 3 2 16 16 H 1.09006 * 109.47080 * 316.17948 * 15 13 3 17 17 C 1.53003 * 109.47253 * 76.17747 * 15 13 3 18 18 O 1.42893 * 109.47167 * 196.17954 * 15 13 3 19 19 C 1.35679 * 117.00179 * 149.99723 * 18 15 13 20 20 C 1.38921 * 119.68581 * 179.97438 * 19 18 15 21 21 C 1.38377 * 119.10831 * 180.02562 * 20 19 18 22 22 C 1.38828 * 118.48835 * 359.97438 * 21 20 19 23 23 C 1.38042 * 119.28646 * 0.25601 * 22 21 20 24 24 N 1.31961 * 120.83996 * 359.45292 * 23 22 21 25 25 H 1.08993 * 109.47560 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47146 * 300.00455 * 1 2 3 27 27 H 1.09006 * 109.46675 * 60.00237 * 1 2 3 28 28 H 1.08999 * 109.47146 * 239.99545 * 2 1 3 29 29 H 1.09006 * 109.46564 * 120.00307 * 2 1 3 30 30 H 1.08994 * 109.47102 * 29.99943 * 4 3 2 31 31 H 1.09006 * 109.46838 * 150.00392 * 4 3 2 32 32 H 0.96995 * 119.99459 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46922 * 55.14113 * 17 15 13 34 34 H 1.08993 * 109.47152 * 175.13834 * 17 15 13 35 35 H 1.08999 * 109.46893 * 295.13903 * 17 15 13 36 36 H 1.07999 * 120.44414 * 359.97438 * 20 19 18 37 37 H 1.08001 * 120.75413 * 180.02562 * 21 20 19 38 38 H 1.08004 * 120.35347 * 179.97438 * 22 21 20 39 39 H 1.08003 * 119.57975 * 179.72389 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3645 2.0357 -1.2641 5 6 3.8179 1.7882 -1.5765 6 1 4.4232 1.2023 -0.9008 7 6 4.3749 2.3105 -2.7244 8 7 5.6432 2.0941 -2.9973 9 14 3.3279 3.3245 -3.8929 10 1 3.3981 4.7561 -3.5047 11 1 3.8347 3.1622 -5.2792 12 1 1.9187 2.8613 -3.8235 13 6 2.1493 2.0497 1.1629 14 8 2.4584 3.2224 1.1568 15 6 1.9116 1.3399 2.4709 16 1 1.0160 0.7236 2.3924 17 6 3.1148 0.4522 2.7955 18 8 1.7367 2.3040 3.5111 19 6 0.9362 1.9524 4.5486 20 6 0.7277 2.8471 5.5907 21 6 -0.0905 2.4759 6.6431 22 6 -0.6746 1.2168 6.6156 23 6 -0.4193 0.3771 5.5500 24 7 0.3612 0.7614 4.5578 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.7465 1.6294 -2.0648 31 1 2.1889 3.1080 -1.1780 32 1 6.0349 2.4614 -3.8051 33 1 4.0231 1.0547 2.7889 34 1 2.9818 0.0061 3.7810 35 1 3.1965 -0.3366 2.0476 36 1 1.1985 3.8190 5.5799 37 1 -0.2712 3.1507 7.4667 38 1 -1.3180 0.8959 7.4215 39 1 -0.8677 -0.6051 5.5260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449796253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:15 Heat of formation + Delta-G solvation = -27.802721 kcal Electronic energy + Delta-G solvation = -21853.563311 eV Core-core repulsion = 18569.313442 eV Total energy + Delta-G solvation = -3284.249869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79300 -39.41822 -37.60041 -35.41391 -32.90242 -32.61742 -31.84488 -30.37703 -30.04398 -27.66408 -24.84719 -23.76649 -23.19519 -22.91266 -21.60779 -18.75616 -18.47850 -16.95916 -16.86423 -16.42953 -15.90647 -15.72630 -15.35034 -14.65921 -14.59584 -14.21329 -13.74265 -13.45587 -13.34320 -13.14631 -12.84901 -12.49795 -12.33917 -12.17183 -12.08380 -11.80074 -11.68450 -11.44869 -10.97156 -10.91026 -10.64802 -10.47558 -10.16069 -10.10026 -9.71349 -9.54280 -9.01077 -8.58976 -8.55212 -7.75937 -6.09063 -4.08168 1.01941 1.12993 2.79811 3.23330 3.29925 3.35916 3.38129 3.65354 3.91072 4.18488 4.39798 4.67068 4.83032 4.87833 4.98285 5.06610 5.15579 5.23770 5.24671 5.30383 5.54051 5.56182 5.64190 5.75137 5.81561 5.84500 5.99259 6.03017 6.12710 6.27332 6.31201 6.42593 6.67866 6.93742 7.20865 7.34992 7.59923 7.73330 8.17836 8.45883 8.87858 8.95213 9.51059 11.04176 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030722 B = 0.004215 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.176510 B = 6641.861565 C = 6881.789814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.587 5.587 4 C 0.217 3.783 5 C -0.531 4.531 6 H 0.076 0.924 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.513 3.487 14 O -0.523 6.523 15 C 0.071 3.929 16 H 0.109 0.891 17 C -0.162 4.162 18 O -0.275 6.275 19 C 0.328 3.672 20 C -0.192 4.192 21 C -0.041 4.041 22 C -0.221 4.221 23 C 0.140 3.860 24 N -0.542 5.542 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.002 -5.890 16.985 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.320 5.320 4 C 0.096 3.904 5 C -0.569 4.569 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.298 3.702 14 O -0.399 6.399 15 C 0.011 3.989 16 H 0.126 0.874 17 C -0.219 4.219 18 O -0.180 6.180 19 C 0.149 3.851 20 C -0.212 4.212 21 C -0.067 4.067 22 C -0.241 4.241 23 C -0.016 4.016 24 N -0.266 5.266 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.160 0.840 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.362 -5.518 16.042 21.595 hybrid contribution -0.563 0.809 -0.062 0.988 sum -13.925 -4.709 15.980 21.713 Atomic orbital electron populations 1.22258 0.96616 1.01810 1.02229 1.21626 0.93528 0.83795 1.03614 1.47826 1.63794 1.13403 1.06968 1.19705 0.96817 0.94056 0.79783 1.21335 0.93536 1.34366 1.07697 0.90636 1.24845 0.94865 0.95643 0.97573 1.69896 1.11853 1.45424 1.26324 0.86856 0.80991 0.81518 0.80383 1.19867 1.21042 1.19035 1.19909 0.78571 0.87223 0.84495 1.90684 1.46543 1.15859 1.86818 1.22300 1.01479 0.89783 0.85305 0.87351 1.22153 0.97553 0.99571 1.02656 1.86414 1.61069 1.41882 1.28682 1.20011 0.88138 0.89200 0.87749 1.21127 1.04236 1.01603 0.94270 1.21395 0.92783 0.95854 0.96634 1.21939 1.04882 0.95839 1.01458 1.22415 0.91982 0.99142 0.88061 1.67312 1.13182 1.16898 1.29223 0.91695 0.93009 0.92150 0.89229 0.91058 0.94961 0.94419 0.92536 0.90992 0.91398 0.89915 0.83952 0.84297 0.84756 0.82486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.05 37.16 0.37 -1.89 16 2 C 0.10 1.56 5.75 -4.05 -0.02 1.54 16 3 N -0.59 -12.38 2.47 -175.06 -0.43 -12.81 16 4 C 0.22 5.37 4.25 -5.19 -0.02 5.34 16 5 C -0.53 -15.28 9.94 -34.44 -0.34 -15.63 16 6 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 9 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 C 0.51 11.22 6.92 -10.98 -0.08 11.14 16 14 O -0.52 -13.79 16.13 -13.81 -0.22 -14.01 16 15 C 0.07 1.24 2.06 -27.88 -0.06 1.18 16 16 H 0.11 1.69 4.88 -51.93 -0.25 1.44 16 17 C -0.16 -2.50 9.29 37.16 0.35 -2.15 16 18 O -0.28 -4.93 9.35 -38.11 -0.36 -5.28 16 19 C 0.33 4.81 7.46 -17.12 -0.13 4.69 16 20 C -0.19 -2.28 10.04 -39.28 -0.39 -2.68 16 21 C -0.04 -0.36 10.17 -39.31 -0.40 -0.76 16 22 C -0.22 -1.80 10.11 -39.43 -0.40 -2.20 16 23 C 0.14 1.35 11.17 -17.57 -0.20 1.15 16 24 N -0.54 -7.11 8.65 -13.33 -0.12 -7.22 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.69 7.01 -51.93 -0.36 0.33 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.44 8.03 -51.93 -0.42 1.03 16 29 H 0.07 0.99 4.78 -51.93 -0.25 0.74 16 30 H 0.03 0.76 7.13 -51.93 -0.37 0.38 16 31 H 0.04 1.01 6.78 -51.93 -0.35 0.65 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.18 6.19 -51.93 -0.32 0.86 16 36 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 39 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -35.40 327.42 -6.80 -42.21 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.30 Total: 0.28 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.42 Total: 1.78 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.23 Total: -46.94 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.58 Total: -19.30 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.40 -6.80 -42.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449796253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.403 kcal (2) G-P(sol) polarization free energy of solvation -35.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds