Wall clock time and date at job start Tue Mar 31 2020 00:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47289 * 2 1 4 4 C 1.46501 * 119.99892 * 265.11077 * 3 2 1 5 5 C 1.50708 * 109.47166 * 270.00067 * 4 3 2 6 6 H 1.07994 * 119.99756 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99921 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00002 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00092 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46982 * 90.00230 * 9 7 5 11 11 H 1.48495 * 109.47108 * 210.00270 * 9 7 5 12 12 H 1.48502 * 109.47032 * 330.00467 * 9 7 5 13 13 C 1.34776 * 120.00409 * 85.11311 * 3 2 1 14 14 O 1.21275 * 120.00387 * 185.44469 * 13 3 2 15 15 C 1.50706 * 119.99742 * 5.44815 * 13 3 2 16 16 H 1.09006 * 109.47080 * 316.17948 * 15 13 3 17 17 C 1.53003 * 109.47253 * 76.17747 * 15 13 3 18 18 O 1.42893 * 109.47167 * 196.17954 * 15 13 3 19 19 C 1.35679 * 117.00179 * 149.99723 * 18 15 13 20 20 C 1.38921 * 119.68581 * 179.97438 * 19 18 15 21 21 C 1.38377 * 119.10831 * 180.02562 * 20 19 18 22 22 C 1.38828 * 118.48835 * 359.97438 * 21 20 19 23 23 C 1.38042 * 119.28646 * 0.25601 * 22 21 20 24 24 N 1.31961 * 120.83996 * 359.45292 * 23 22 21 25 25 H 1.08993 * 109.47560 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47146 * 300.00455 * 1 2 3 27 27 H 1.09006 * 109.46675 * 60.00237 * 1 2 3 28 28 H 1.08999 * 109.47146 * 239.99545 * 2 1 3 29 29 H 1.09006 * 109.46564 * 120.00307 * 2 1 3 30 30 H 1.08994 * 109.47102 * 29.99943 * 4 3 2 31 31 H 1.09006 * 109.46838 * 150.00392 * 4 3 2 32 32 H 0.96995 * 119.99459 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46922 * 55.14113 * 17 15 13 34 34 H 1.08993 * 109.47152 * 175.13834 * 17 15 13 35 35 H 1.08999 * 109.46893 * 295.13903 * 17 15 13 36 36 H 1.07999 * 120.44414 * 359.97438 * 20 19 18 37 37 H 1.08001 * 120.75413 * 180.02562 * 21 20 19 38 38 H 1.08004 * 120.35347 * 179.97438 * 22 21 20 39 39 H 1.08003 * 119.57975 * 179.72389 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3645 2.0357 -1.2641 5 6 3.8179 1.7882 -1.5765 6 1 4.4232 1.2023 -0.9008 7 6 4.3749 2.3105 -2.7244 8 7 5.6432 2.0941 -2.9973 9 14 3.3279 3.3245 -3.8929 10 1 3.3981 4.7561 -3.5047 11 1 3.8347 3.1622 -5.2792 12 1 1.9187 2.8613 -3.8235 13 6 2.1493 2.0497 1.1629 14 8 2.4584 3.2224 1.1568 15 6 1.9116 1.3399 2.4709 16 1 1.0160 0.7236 2.3924 17 6 3.1148 0.4522 2.7955 18 8 1.7367 2.3040 3.5111 19 6 0.9362 1.9524 4.5486 20 6 0.7277 2.8471 5.5907 21 6 -0.0905 2.4759 6.6431 22 6 -0.6746 1.2168 6.6156 23 6 -0.4193 0.3771 5.5500 24 7 0.3612 0.7614 4.5578 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.7465 1.6294 -2.0648 31 1 2.1889 3.1080 -1.1780 32 1 6.0349 2.4614 -3.8051 33 1 4.0231 1.0547 2.7889 34 1 2.9818 0.0061 3.7810 35 1 3.1965 -0.3366 2.0476 36 1 1.1985 3.8190 5.5799 37 1 -0.2712 3.1507 7.4667 38 1 -1.3180 0.8959 7.4215 39 1 -0.8677 -0.6051 5.5260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449796253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:13 Heat of formation + Delta-G solvation = -52.726956 kcal Electronic energy + Delta-G solvation = -21854.644107 eV Core-core repulsion = 18569.313442 eV Total energy + Delta-G solvation = -3285.330665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.87227 -40.82775 -38.80336 -37.12054 -34.96619 -33.48854 -33.19055 -31.86766 -30.98268 -29.53580 -26.21675 -24.83530 -24.43934 -24.21931 -23.02244 -20.27158 -19.61350 -19.11721 -18.19661 -17.66285 -17.00121 -16.90465 -16.70407 -16.22060 -16.05109 -15.45523 -15.03301 -14.90484 -14.54441 -14.35691 -14.23556 -13.96938 -13.81234 -13.48279 -13.44838 -13.26120 -12.98577 -12.77882 -12.57861 -12.48259 -12.13469 -12.06448 -11.86378 -11.75699 -10.89559 -10.84917 -10.71500 -10.54237 -9.53466 -9.47414 -8.35654 -6.41171 0.22744 0.34971 1.30968 1.35841 1.43712 1.53179 1.57778 2.29554 2.50112 2.85258 2.98383 3.29035 3.40850 3.84284 3.90333 4.04011 4.06848 4.14259 4.24985 4.33391 4.35579 4.50705 4.55475 4.66226 4.74821 4.82674 4.84679 4.90365 4.94160 5.04904 5.09740 5.30926 5.32303 5.42768 5.52493 5.59814 6.17635 6.24422 6.53544 6.60188 6.89068 7.14077 7.27513 8.81033 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030722 B = 0.004215 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.176510 B = 6641.861565 C = 6881.789814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.089 3.911 3 N -0.590 5.590 4 C 0.225 3.775 5 C -0.539 4.539 6 H 0.033 0.967 7 C 0.014 3.986 8 N -0.942 5.942 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.238 1.238 13 C 0.501 3.499 14 O -0.583 6.583 15 C 0.087 3.913 16 H 0.130 0.870 17 C -0.154 4.154 18 O -0.309 6.309 19 C 0.289 3.711 20 C -0.209 4.209 21 C -0.035 4.035 22 C -0.203 4.203 23 C 0.129 3.871 24 N -0.559 5.559 25 H 0.101 0.899 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.017 0.983 32 H 0.269 0.731 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.138 0.862 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.313 -7.390 18.470 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.033 4.033 3 N -0.322 5.322 4 C 0.103 3.897 5 C -0.577 4.577 6 H 0.051 0.949 7 C -0.184 4.184 8 N -0.582 5.582 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.197 1.197 12 H -0.161 1.161 13 C 0.289 3.711 14 O -0.463 6.463 15 C 0.028 3.972 16 H 0.147 0.853 17 C -0.212 4.212 18 O -0.216 6.216 19 C 0.112 3.888 20 C -0.230 4.230 21 C -0.060 4.060 22 C -0.222 4.222 23 C -0.027 4.027 24 N -0.283 5.283 25 H 0.120 0.880 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.156 0.844 37 H 0.191 0.809 38 H 0.192 0.808 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -16.712 -7.085 17.551 25.249 hybrid contribution 0.444 1.196 -0.325 1.316 sum -16.268 -5.889 17.226 24.415 Atomic orbital electron populations 1.22182 0.93886 1.04049 1.01769 1.21994 0.95699 0.80946 1.04660 1.47938 1.63241 1.15267 1.05731 1.19394 0.94594 0.93467 0.82276 1.21539 0.95377 1.33747 1.07062 0.94867 1.25808 0.96201 0.96823 0.99602 1.70039 1.13936 1.46904 1.27354 0.85754 0.80512 0.78947 0.77999 1.20420 1.19702 1.16086 1.20850 0.77232 0.86819 0.86226 1.90632 1.49263 1.18524 1.87851 1.22080 1.02750 0.89216 0.83188 0.85303 1.22118 0.95688 0.99097 1.04266 1.86359 1.62800 1.42741 1.29706 1.20259 0.89747 0.90918 0.87912 1.21344 1.05387 1.01377 0.94869 1.21849 0.91145 0.96845 0.96205 1.22429 1.03543 0.94766 1.01482 1.23107 0.91174 1.00761 0.87617 1.67239 1.13944 1.16262 1.30827 0.88017 0.93214 0.92867 0.89384 0.88895 0.92633 0.96534 0.92180 0.93598 0.89143 0.88796 0.84393 0.80864 0.80780 0.79212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.05 71.98 0.72 -3.13 16 2 C 0.09 2.73 5.75 86.38 0.50 3.22 16 3 N -0.59 -25.32 2.47 -826.15 -2.04 -27.35 16 4 C 0.22 11.30 4.25 85.64 0.36 11.67 16 5 C -0.54 -32.19 9.94 25.60 0.25 -31.94 16 6 H 0.03 2.20 8.06 -2.91 -0.02 2.17 16 7 C 0.01 0.84 5.47 84.65 0.46 1.30 16 8 N -0.94 -60.03 13.96 21.45 0.30 -59.73 16 9 Si 0.95 45.10 27.47 68.60 1.88 46.99 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 13 C 0.50 22.80 6.92 87.66 0.61 23.41 16 14 O -0.58 -32.59 16.13 15.51 0.25 -32.34 16 15 C 0.09 3.08 2.06 29.85 0.06 3.14 16 16 H 0.13 3.91 4.88 -2.38 -0.01 3.90 16 17 C -0.15 -4.82 9.29 71.98 0.67 -4.16 16 18 O -0.31 -11.51 9.35 -71.45 -0.67 -12.18 16 19 C 0.29 8.45 7.46 84.79 0.63 9.08 16 20 C -0.21 -4.87 10.04 22.47 0.23 -4.64 16 21 C -0.04 -0.51 10.17 22.44 0.23 -0.28 16 22 C -0.20 -2.41 10.11 22.36 0.23 -2.18 16 23 C 0.13 2.03 11.17 84.63 0.95 2.98 16 24 N -0.56 -13.66 8.65 -308.94 -2.67 -16.33 16 25 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 1.22 7.01 -2.39 -0.02 1.20 16 27 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.09 2.74 8.03 -2.39 -0.02 2.72 16 29 H 0.09 2.43 4.78 -2.38 -0.01 2.42 16 30 H 0.06 2.53 7.13 -2.39 -0.02 2.52 16 31 H 0.02 0.91 6.78 -2.38 -0.02 0.89 16 32 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.09 2.65 6.19 -2.39 -0.01 2.63 16 36 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 37 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 39 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -83.09 327.42 3.95 -79.14 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.99 Total: 13.34 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 5.90 Total: 8.47 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -4.41 Total: -103.42 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -0.42 Total: -44.52 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Total: -83.09 3.95 -79.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449796253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.413 kcal (2) G-P(sol) polarization free energy of solvation -83.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds