Wall clock time and date at job start Tue Mar 31 2020 01:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47334 * 2 1 4 4 C 1.42898 * 114.00055 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46923 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47314 * 64.99899 * 5 4 3 7 7 C 1.34780 * 120.00217 * 179.97438 * 6 5 4 8 8 O 1.21589 * 119.99711 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99956 * 180.02562 * 7 6 5 10 10 C 1.39950 * 119.99907 * 184.68893 * 9 7 6 11 11 C 1.39290 * 119.94927 * 144.55791 * 10 9 7 12 12 C 1.38484 * 120.42926 * 179.97438 * 11 10 9 13 13 C 1.37685 * 120.32588 * 0.29666 * 12 11 10 14 14 C 1.40738 * 119.87645 * 359.47672 * 13 12 11 15 15 C 1.41414 * 120.20569 * 180.26951 * 14 13 12 16 16 H 1.07998 * 119.99814 * 329.01760 * 15 14 13 17 17 C 1.39936 * 119.99846 * 149.01915 * 15 14 13 18 18 N 1.30826 * 120.00074 * 167.82091 * 17 15 14 19 19 Si 1.86797 * 119.99900 * 347.82248 * 17 15 14 20 20 H 1.48498 * 109.47421 * 92.65467 * 19 17 15 21 21 H 1.48501 * 109.47333 * 212.65681 * 19 17 15 22 22 H 1.48501 * 109.47398 * 332.65478 * 19 17 15 23 23 C 1.38236 * 119.94877 * 324.57519 * 10 9 7 24 24 H 1.09005 * 109.46946 * 59.99510 * 1 2 3 25 25 H 1.08993 * 109.47297 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46891 * 300.00131 * 1 2 3 27 27 H 1.09000 * 109.47455 * 240.00061 * 2 1 3 28 28 H 1.08996 * 109.47261 * 119.99972 * 2 1 3 29 29 H 1.09002 * 109.47041 * 60.00340 * 4 3 2 30 30 H 1.08995 * 109.47451 * 299.99964 * 4 3 2 31 31 H 1.08999 * 109.47423 * 305.00060 * 5 4 3 32 32 H 1.08998 * 109.47562 * 185.00169 * 5 4 3 33 33 H 0.96997 * 119.99973 * 0.02562 * 6 5 4 34 34 H 0.97002 * 119.99894 * 4.68977 * 9 7 6 35 35 H 1.07997 * 119.78307 * 359.97438 * 11 10 9 36 36 H 1.08007 * 119.83823 * 180.02562 * 12 11 10 37 37 H 1.07996 * 120.05558 * 179.72300 * 13 12 11 38 38 H 0.96997 * 120.00032 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.15834 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 7 3.3867 3.5615 1.2511 7 6 3.6282 4.8686 1.4739 8 8 4.2097 5.5308 0.6361 9 7 3.2251 5.4417 2.6252 10 6 3.3875 6.8186 2.8158 11 6 2.4304 7.5401 3.5254 12 6 2.5814 8.9028 3.7204 13 6 3.6774 9.5610 3.2092 14 6 4.6551 8.8442 2.4942 15 6 5.7864 9.5122 1.9710 16 1 5.7086 10.5435 1.6601 17 6 7.0066 8.8369 1.8562 18 7 7.9825 9.3629 1.1617 19 14 7.2419 7.1843 2.6946 20 1 6.8979 6.0946 1.7463 21 1 8.6577 7.0420 3.1196 22 1 6.3574 7.1025 3.8846 23 6 4.4975 7.4606 2.2993 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8340 0.9764 -0.8892 30 1 3.8333 0.9767 0.8908 31 1 3.3500 3.4409 -0.8424 32 1 4.9082 3.0255 -0.0893 33 1 2.9232 3.0332 1.9195 34 1 2.8224 4.8998 3.3217 35 1 1.5649 7.0334 3.9261 36 1 1.8336 9.4528 4.2724 37 1 3.7885 10.6246 3.3600 38 1 8.8285 8.8950 1.0824 39 1 5.2402 6.9021 1.7490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455921505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:08 Heat of formation + Delta-G solvation = -55.833850 kcal Electronic energy + Delta-G solvation = -21209.085546 eV Core-core repulsion = 17923.620156 eV Total energy + Delta-G solvation = -3285.465390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.00186 -38.47511 -37.47286 -34.79477 -34.23046 -33.16114 -31.74154 -30.27081 -29.42600 -27.75840 -25.09443 -23.13486 -23.11098 -21.79724 -20.86967 -20.00398 -18.28334 -17.40287 -17.13909 -16.60858 -16.09491 -15.47953 -15.21541 -14.75660 -14.42952 -14.33105 -13.90247 -13.67671 -13.30329 -13.08885 -12.80195 -12.61877 -12.31501 -11.97961 -11.92065 -11.68202 -11.46422 -11.33957 -10.74823 -10.66362 -10.56076 -10.01007 -9.93578 -9.88992 -9.56190 -9.10547 -8.92332 -8.84837 -7.51228 -7.06196 -6.78956 -4.37544 2.56342 2.77556 2.98725 3.27923 3.30174 3.32874 3.41155 3.68688 4.13723 4.51894 4.63075 4.65314 4.69020 4.90764 4.92331 5.00976 5.08944 5.27374 5.53569 5.55573 5.62671 5.75949 5.81351 6.05438 6.26139 6.55565 6.59797 6.70269 6.81032 6.85557 6.88093 7.11572 7.32032 7.60731 7.68878 7.75668 7.94542 8.21899 8.39064 8.47459 8.74790 8.93990 9.02005 10.23570 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.004379 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.137533 B = 6392.406354 C = 7321.076814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.385 6.385 4 C 0.051 3.949 5 C 0.142 3.858 6 N -0.745 5.745 7 C 0.695 3.305 8 O -0.561 6.561 9 N -0.685 5.685 10 C 0.184 3.816 11 C -0.265 4.265 12 C -0.072 4.072 13 C -0.220 4.220 14 C 0.100 3.900 15 C -0.444 4.444 16 H 0.091 0.909 17 C 0.085 3.915 18 N -0.816 5.816 19 Si 0.911 3.089 20 H -0.264 1.264 21 H -0.297 1.297 22 H -0.247 1.247 23 C -0.228 4.228 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.395 0.605 34 H 0.396 0.604 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.283 0.717 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.476 -19.405 0.936 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.305 6.305 4 C -0.026 4.026 5 C 0.017 3.983 6 N -0.403 5.403 7 C 0.395 3.605 8 O -0.436 6.436 9 N -0.332 5.332 10 C 0.091 3.909 11 C -0.286 4.286 12 C -0.091 4.091 13 C -0.240 4.240 14 C 0.096 3.904 15 C -0.472 4.472 16 H 0.109 0.891 17 C -0.132 4.132 18 N -0.441 5.441 19 Si 0.739 3.261 20 H -0.190 1.190 21 H -0.225 1.225 22 H -0.170 1.170 23 C -0.249 4.249 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.229 0.771 34 H 0.230 0.770 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.790 -18.623 -0.025 20.593 hybrid contribution -0.061 -1.554 0.864 1.779 sum -8.850 -20.177 0.839 22.049 Atomic orbital electron populations 1.21744 0.93684 1.02158 1.03350 1.22467 0.95726 0.83808 1.00004 1.87976 1.20746 1.26345 1.95426 1.22792 0.81865 0.96680 1.01222 1.21188 0.99968 0.90179 0.86955 1.44990 1.64624 1.09191 1.21497 1.16009 0.80137 0.81620 0.82712 1.91012 1.45171 1.61757 1.45680 1.42576 1.65171 1.08330 1.17104 1.17275 0.94708 0.80004 0.98891 1.20057 1.00439 0.94539 1.13580 1.20400 0.96722 0.93355 0.98590 1.21034 0.98262 0.98990 1.05720 1.17688 0.93079 0.90870 0.88742 1.19472 0.92564 1.00395 1.34811 0.89057 1.26101 0.95601 0.98994 0.92537 1.69655 1.04610 1.39268 1.30553 0.86339 0.75971 0.81972 0.81808 1.19025 1.22515 1.17022 1.21235 0.98802 0.95991 1.08853 0.91761 0.91180 0.91771 0.93408 0.93444 0.91536 0.92601 0.90611 0.90020 0.77132 0.76992 0.88731 0.88431 0.88117 0.90641 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.42 6.66 37.16 0.25 0.66 16 3 O -0.39 -3.94 10.29 -35.23 -0.36 -4.30 16 4 C 0.05 0.46 6.07 37.16 0.23 0.68 16 5 C 0.14 1.77 6.06 -4.04 -0.02 1.74 16 6 N -0.75 -10.54 5.51 -65.22 -0.36 -10.90 16 7 C 0.69 13.63 8.40 -86.92 -0.73 12.90 16 8 O -0.56 -13.92 13.79 5.29 0.07 -13.85 16 9 N -0.69 -12.87 5.34 -14.27 -0.08 -12.95 16 10 C 0.18 4.24 6.29 -83.76 -0.53 3.71 16 11 C -0.26 -5.60 9.97 -39.10 -0.39 -5.99 16 12 C -0.07 -1.54 10.02 -39.69 -0.40 -1.94 16 13 C -0.22 -5.36 9.79 -38.84 -0.38 -5.74 16 14 C 0.10 2.72 5.13 -106.85 -0.55 2.18 16 15 C -0.44 -12.87 9.61 -37.74 -0.36 -13.23 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 17 C 0.09 2.43 5.47 -17.34 -0.09 2.34 16 18 N -0.82 -23.33 13.93 55.55 0.77 -22.55 16 19 Si 0.91 22.98 24.40 -169.99 -4.15 18.83 16 20 H -0.26 -6.86 6.67 56.52 0.38 -6.49 16 21 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.25 -6.24 6.66 56.52 0.38 -5.86 16 23 C -0.23 -6.06 5.63 -38.69 -0.22 -6.27 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.40 4.35 8.49 -40.82 -0.35 4.00 16 34 H 0.40 5.63 8.84 -40.82 -0.36 5.27 16 35 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.28 7.38 8.30 -40.82 -0.34 7.04 16 39 H 0.13 3.54 2.58 -52.49 -0.14 3.40 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -34.35 326.78 -7.52 -41.87 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.52 Total: 8.52 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -2.82 Total: -9.59 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.34 Total: -46.40 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.29 Total: -18.15 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.15 Total: 18.83 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.35 -7.52 -41.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455921505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.968 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds