Wall clock time and date at job start Tue Mar 31 2020 01:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47334 * 2 1 4 4 C 1.42898 * 114.00055 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46923 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47314 * 64.99899 * 5 4 3 7 7 C 1.34780 * 120.00217 * 179.97438 * 6 5 4 8 8 O 1.21589 * 119.99711 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99956 * 180.02562 * 7 6 5 10 10 C 1.39950 * 119.99907 * 184.68893 * 9 7 6 11 11 C 1.39290 * 119.94927 * 144.55791 * 10 9 7 12 12 C 1.38484 * 120.42926 * 179.97438 * 11 10 9 13 13 C 1.37685 * 120.32588 * 0.29666 * 12 11 10 14 14 C 1.40738 * 119.87645 * 359.47672 * 13 12 11 15 15 C 1.41414 * 120.20569 * 180.26951 * 14 13 12 16 16 H 1.07998 * 119.99814 * 329.01760 * 15 14 13 17 17 C 1.39936 * 119.99846 * 149.01915 * 15 14 13 18 18 N 1.30826 * 120.00074 * 167.82091 * 17 15 14 19 19 Si 1.86797 * 119.99900 * 347.82248 * 17 15 14 20 20 H 1.48498 * 109.47421 * 92.65467 * 19 17 15 21 21 H 1.48501 * 109.47333 * 212.65681 * 19 17 15 22 22 H 1.48501 * 109.47398 * 332.65478 * 19 17 15 23 23 C 1.38236 * 119.94877 * 324.57519 * 10 9 7 24 24 H 1.09005 * 109.46946 * 59.99510 * 1 2 3 25 25 H 1.08993 * 109.47297 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46891 * 300.00131 * 1 2 3 27 27 H 1.09000 * 109.47455 * 240.00061 * 2 1 3 28 28 H 1.08996 * 109.47261 * 119.99972 * 2 1 3 29 29 H 1.09002 * 109.47041 * 60.00340 * 4 3 2 30 30 H 1.08995 * 109.47451 * 299.99964 * 4 3 2 31 31 H 1.08999 * 109.47423 * 305.00060 * 5 4 3 32 32 H 1.08998 * 109.47562 * 185.00169 * 5 4 3 33 33 H 0.96997 * 119.99973 * 0.02562 * 6 5 4 34 34 H 0.97002 * 119.99894 * 4.68977 * 9 7 6 35 35 H 1.07997 * 119.78307 * 359.97438 * 11 10 9 36 36 H 1.08007 * 119.83823 * 180.02562 * 12 11 10 37 37 H 1.07996 * 120.05558 * 179.72300 * 13 12 11 38 38 H 0.96997 * 120.00032 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.15834 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 7 3.3867 3.5615 1.2511 7 6 3.6282 4.8686 1.4739 8 8 4.2097 5.5308 0.6361 9 7 3.2251 5.4417 2.6252 10 6 3.3875 6.8186 2.8158 11 6 2.4304 7.5401 3.5254 12 6 2.5814 8.9028 3.7204 13 6 3.6774 9.5610 3.2092 14 6 4.6551 8.8442 2.4942 15 6 5.7864 9.5122 1.9710 16 1 5.7086 10.5435 1.6601 17 6 7.0066 8.8369 1.8562 18 7 7.9825 9.3629 1.1617 19 14 7.2419 7.1843 2.6946 20 1 6.8979 6.0946 1.7463 21 1 8.6577 7.0420 3.1196 22 1 6.3574 7.1025 3.8846 23 6 4.4975 7.4606 2.2993 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8340 0.9764 -0.8892 30 1 3.8333 0.9767 0.8908 31 1 3.3500 3.4409 -0.8424 32 1 4.9082 3.0255 -0.0893 33 1 2.9232 3.0332 1.9195 34 1 2.8224 4.8998 3.3217 35 1 1.5649 7.0334 3.9261 36 1 1.8336 9.4528 4.2724 37 1 3.7885 10.6246 3.3600 38 1 8.8285 8.8950 1.0824 39 1 5.2402 6.9021 1.7490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455921505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:08 Heat of formation + Delta-G solvation = -81.973313 kcal Electronic energy + Delta-G solvation = -21210.219038 eV Core-core repulsion = 17923.620156 eV Total energy + Delta-G solvation = -3286.598882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55737 -39.53161 -38.93710 -36.20910 -35.86413 -35.08757 -32.47381 -32.20037 -30.69351 -29.14895 -27.10566 -24.35530 -23.65805 -23.32032 -22.52809 -21.69830 -19.94315 -19.11964 -18.10997 -17.82661 -17.40867 -16.98848 -16.55312 -16.33468 -15.87469 -15.80098 -15.34690 -14.95221 -14.75033 -14.51005 -14.12616 -13.97699 -13.87858 -13.37076 -13.14188 -12.71610 -12.65773 -12.61598 -12.40653 -12.24748 -12.00186 -11.89732 -11.79373 -11.41737 -11.04309 -10.74924 -10.56797 -10.20085 -9.44851 -8.89286 -8.82448 -6.51803 0.70029 0.87783 1.22017 1.31494 1.39683 1.61994 2.08984 2.11308 2.63082 2.66907 3.26216 3.53657 3.87680 4.14185 4.21617 4.33750 4.38428 4.47590 4.52221 4.55887 4.56561 4.76463 4.77428 4.91473 4.93160 5.01735 5.02583 5.05511 5.28776 5.33064 5.39230 5.61618 5.76082 5.87354 5.91075 6.08747 6.24295 6.28064 6.41303 6.73740 6.86395 7.04388 7.53603 8.20400 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.004379 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.137533 B = 6392.406354 C = 7321.076814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.411 6.411 4 C 0.062 3.938 5 C 0.136 3.864 6 N -0.721 5.721 7 C 0.689 3.311 8 O -0.619 6.619 9 N -0.673 5.673 10 C 0.179 3.821 11 C -0.236 4.236 12 C -0.065 4.065 13 C -0.231 4.231 14 C 0.074 3.926 15 C -0.483 4.483 16 H 0.059 0.941 17 C 0.046 3.954 18 N -0.859 5.859 19 Si 0.970 3.030 20 H -0.282 1.282 21 H -0.277 1.277 22 H -0.248 1.248 23 C -0.251 4.251 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.414 0.586 34 H 0.422 0.578 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.106 0.894 38 H 0.290 0.710 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.206 -22.520 3.064 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.331 6.331 4 C -0.015 4.015 5 C 0.012 3.988 6 N -0.378 5.378 7 C 0.389 3.611 8 O -0.498 6.498 9 N -0.322 5.322 10 C 0.084 3.916 11 C -0.257 4.257 12 C -0.084 4.084 13 C -0.251 4.251 14 C 0.071 3.929 15 C -0.514 4.514 16 H 0.078 0.922 17 C -0.167 4.167 18 N -0.487 5.487 19 Si 0.796 3.204 20 H -0.209 1.209 21 H -0.204 1.204 22 H -0.171 1.171 23 C -0.273 4.273 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.251 0.749 34 H 0.260 0.740 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.560 -21.808 2.149 24.776 hybrid contribution 0.461 -0.677 0.242 0.854 sum -11.099 -22.485 2.390 25.189 Atomic orbital electron populations 1.21776 0.93504 1.03225 1.02454 1.22658 0.95925 0.82649 1.01271 1.87934 1.21204 1.28282 1.95700 1.22722 0.81743 0.93768 1.03259 1.21336 0.99599 0.92483 0.85416 1.44832 1.63343 1.07305 1.22368 1.16305 0.79661 0.82870 0.82292 1.90993 1.47673 1.63546 1.47563 1.42352 1.64972 1.07117 1.17732 1.17450 0.93859 0.82017 0.98236 1.20665 1.00320 0.94428 1.10274 1.20914 0.96259 0.93851 0.97352 1.21285 0.98681 0.99561 1.05534 1.17858 0.93447 0.91749 0.89820 1.19487 0.94380 0.99497 1.38008 0.92230 1.26719 0.95263 1.01665 0.93051 1.69687 1.05393 1.40919 1.32697 0.85435 0.76611 0.78041 0.80265 1.20860 1.20407 1.17124 1.21228 1.00230 0.95859 1.09969 0.92878 0.89178 0.92412 0.92353 0.91898 0.89504 0.90442 0.92639 0.90557 0.74871 0.74002 0.83833 0.83689 0.87569 0.89958 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 71.98 0.74 -0.94 16 2 C 0.05 0.60 6.66 71.98 0.48 1.08 16 3 O -0.41 -7.32 10.29 -148.98 -1.53 -8.85 16 4 C 0.06 0.92 6.07 71.98 0.44 1.36 16 5 C 0.14 3.23 6.06 86.38 0.52 3.76 16 6 N -0.72 -18.91 5.51 -478.53 -2.64 -21.54 16 7 C 0.69 26.14 8.40 179.05 1.50 27.64 16 8 O -0.62 -31.19 13.79 -4.00 -0.06 -31.24 16 9 N -0.67 -23.32 5.34 -317.32 -1.69 -25.01 16 10 C 0.18 7.78 6.29 38.10 0.24 8.02 16 11 C -0.24 -8.78 9.97 22.58 0.23 -8.55 16 12 C -0.07 -2.52 10.02 22.20 0.22 -2.30 16 13 C -0.23 -11.00 9.79 22.75 0.22 -10.78 16 14 C 0.07 4.14 5.13 -21.31 -0.11 4.03 16 15 C -0.48 -29.78 9.61 23.46 0.23 -29.55 16 16 H 0.06 3.87 8.06 -2.91 -0.02 3.84 16 17 C 0.05 2.74 5.47 85.25 0.47 3.21 16 18 N -0.86 -52.00 13.93 21.82 0.30 -51.69 16 19 Si 0.97 49.52 24.40 68.60 1.67 51.20 16 20 H -0.28 -14.99 6.67 99.48 0.66 -14.33 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.25 -12.42 6.66 99.48 0.66 -11.75 16 23 C -0.25 -13.44 5.63 22.85 0.13 -13.31 16 24 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.41 7.71 8.49 -92.71 -0.79 6.92 16 34 H 0.42 10.07 8.84 -92.71 -0.82 9.25 16 35 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 36 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 38 H 0.29 15.91 8.30 -92.71 -0.77 15.14 16 39 H 0.10 6.03 2.58 -2.91 -0.01 6.03 16 Total: -1.00 -79.98 326.78 0.75 -79.24 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -0.62 Total: 24.25 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 5.31 Total: -16.34 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -4.03 Total: -98.25 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -1.59 Total: -40.09 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 1.67 Total: 51.20 kcal Total: -79.98 0.75 -79.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455921505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.735 kcal (2) G-P(sol) polarization free energy of solvation -79.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds