Wall clock time and date at job start Tue Mar 31 2020 01:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99710 * 2 1 4 4 C 1.52999 * 109.47151 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46880 * 64.99727 * 4 3 2 6 6 C 1.46498 * 120.00462 * 270.00056 * 5 4 3 7 7 C 1.34779 * 119.99706 * 90.00455 * 5 4 3 8 8 O 1.21591 * 120.00228 * 359.97438 * 7 5 4 9 9 N 1.34778 * 119.99825 * 179.97438 * 7 5 4 10 10 C 1.39959 * 119.99848 * 184.65274 * 9 7 5 11 11 C 1.39289 * 119.94663 * 144.56359 * 10 9 7 12 12 C 1.38485 * 120.43050 * 179.97438 * 11 10 9 13 13 C 1.37682 * 120.32098 * 0.29287 * 12 11 10 14 14 C 1.40750 * 119.88312 * 359.47894 * 13 12 11 15 15 C 1.41405 * 120.21204 * 180.26608 * 14 13 12 16 16 H 1.07998 * 120.00320 * 329.05055 * 15 14 13 17 17 C 1.39933 * 119.99942 * 149.04467 * 15 14 13 18 18 N 1.30826 * 120.00206 * 167.85885 * 17 15 14 19 19 Si 1.86806 * 120.00027 * 347.86041 * 17 15 14 20 20 H 1.48504 * 109.46861 * 92.66533 * 19 17 15 21 21 H 1.48498 * 109.47131 * 212.66837 * 19 17 15 22 22 H 1.48501 * 109.47099 * 332.66555 * 19 17 15 23 23 C 1.38238 * 119.94826 * 324.57914 * 10 9 7 24 24 H 1.09004 * 109.47076 * 59.99934 * 1 2 3 25 25 H 1.09002 * 109.46906 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47206 * 299.99779 * 1 2 3 27 27 H 1.09000 * 109.47150 * 59.99935 * 3 2 1 28 28 H 1.09004 * 109.47022 * 299.99837 * 3 2 1 29 29 H 1.09006 * 109.47241 * 305.00275 * 4 3 2 30 30 H 1.09000 * 109.47807 * 184.99658 * 4 3 2 31 31 H 1.09005 * 109.47236 * 270.00528 * 6 5 4 32 32 H 1.09000 * 109.46749 * 29.99782 * 6 5 4 33 33 H 1.08999 * 109.47387 * 149.99994 * 6 5 4 34 34 H 0.96993 * 120.00098 * 4.65731 * 9 7 5 35 35 H 1.08001 * 119.78336 * 359.97438 * 11 10 9 36 36 H 1.07998 * 119.84058 * 180.02562 * 12 11 10 37 37 H 1.07996 * 120.06224 * 179.72648 * 13 12 11 38 38 H 0.97000 * 120.00522 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.15902 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3404 7 6 4.2634 1.3330 -2.3200 8 8 4.1554 2.5418 -2.2460 9 7 4.6698 0.7620 -3.4713 10 6 5.0607 1.5634 -4.5500 11 6 6.0977 1.1505 -5.3831 12 6 6.4923 1.9353 -6.4537 13 6 5.8671 3.1364 -6.7027 14 6 4.8143 3.5644 -5.8723 15 6 4.1635 4.7941 -6.1251 16 1 4.7100 5.6132 -6.5686 17 6 2.8112 4.9496 -5.8007 18 7 2.2693 6.1404 -5.8087 19 14 1.7796 3.4570 -5.3561 20 1 1.7963 3.2647 -3.8836 21 1 0.3822 3.6675 -5.8121 22 1 2.3405 2.2524 -6.0190 23 6 4.4171 2.7637 -4.7868 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9785 2.1766 0.0901 31 1 5.1157 -1.1858 -1.0516 32 1 3.3859 -1.3631 -0.6713 33 1 3.9139 -1.2122 -2.3645 34 1 4.6913 -0.2043 -3.5522 35 1 6.5974 0.2121 -5.1929 36 1 7.2973 1.6057 -7.0938 37 1 6.1811 3.7473 -7.5361 38 1 1.3320 6.2483 -5.5835 39 1 3.6127 3.0847 -4.1415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455926412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:13 Heat of formation + Delta-G solvation = -39.422617 kcal Electronic energy + Delta-G solvation = -22064.537216 eV Core-core repulsion = 18779.783470 eV Total energy + Delta-G solvation = -3284.753746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23913 -38.18744 -37.42565 -35.24544 -34.41640 -33.20295 -30.52962 -30.22851 -28.24879 -26.91610 -25.90906 -25.11162 -23.31920 -21.67374 -20.55229 -19.40870 -18.23663 -17.24955 -16.56616 -16.31535 -16.09433 -15.75337 -15.24083 -14.91022 -14.43378 -14.17314 -13.93378 -13.56817 -13.08557 -12.83239 -12.73283 -12.50078 -12.25755 -12.09345 -11.97389 -11.93364 -11.48906 -11.20808 -10.77070 -10.68820 -10.55812 -9.98623 -9.91358 -9.79750 -9.56119 -9.12527 -8.88569 -8.56373 -7.53247 -7.07869 -6.81222 -4.39713 2.52486 2.74873 2.89021 3.25180 3.27225 3.38783 3.57249 3.72220 4.11052 4.20465 4.61186 4.98326 5.02764 5.11890 5.15747 5.24394 5.30657 5.46830 5.48281 5.51392 5.58573 5.73839 5.81483 6.03822 6.24014 6.46561 6.56518 6.71550 6.80116 6.86671 6.98691 7.09434 7.28126 7.58007 7.63849 7.72252 7.92524 8.19359 8.31553 8.44583 8.72652 8.91728 8.97740 10.21257 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.006579 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.665980 B = 4255.208156 C = 5414.095830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.040 3.960 4 C 0.140 3.860 5 N -0.631 5.631 6 C 0.084 3.916 7 C 0.697 3.303 8 O -0.561 6.561 9 N -0.684 5.684 10 C 0.183 3.817 11 C -0.264 4.264 12 C -0.071 4.071 13 C -0.220 4.220 14 C 0.100 3.900 15 C -0.444 4.444 16 H 0.092 0.908 17 C 0.086 3.914 18 N -0.816 5.816 19 Si 0.910 3.090 20 H -0.265 1.265 21 H -0.297 1.297 22 H -0.247 1.247 23 C -0.228 4.228 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.397 0.603 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.283 0.717 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.743 -14.141 10.909 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.038 4.038 4 C 0.016 3.984 5 N -0.370 5.370 6 C -0.059 4.059 7 C 0.398 3.602 8 O -0.436 6.436 9 N -0.332 5.332 10 C 0.090 3.910 11 C -0.286 4.286 12 C -0.090 4.090 13 C -0.240 4.240 14 C 0.097 3.903 15 C -0.472 4.472 16 H 0.110 0.890 17 C -0.131 4.131 18 N -0.441 5.441 19 Si 0.738 3.262 20 H -0.191 1.191 21 H -0.225 1.225 22 H -0.170 1.170 23 C -0.249 4.249 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.233 0.767 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.906 -13.207 11.024 17.308 hybrid contribution -0.812 -0.861 0.234 1.206 sum -2.717 -14.068 11.258 18.221 Atomic orbital electron populations 1.22713 0.81317 1.02426 1.00018 1.87821 1.19518 1.28138 1.95479 1.23128 0.94821 0.84780 1.01075 1.21340 0.91605 1.00387 0.85075 1.46957 1.71787 1.06509 1.11739 1.21701 1.01519 0.80245 1.02476 1.15986 0.78546 0.85409 0.80217 1.90995 1.58122 1.11834 1.82669 1.42749 1.69172 1.09364 1.11919 1.17301 0.94769 0.92131 0.86817 1.20053 1.02932 1.02968 1.02610 1.20397 0.97907 0.94724 0.96011 1.21037 1.03306 0.97689 1.01924 1.17685 0.91608 0.91934 0.89122 1.19471 0.95057 0.97561 1.35158 0.89033 1.26085 0.98864 0.97060 0.91137 1.69653 1.14547 1.23603 1.36251 0.86354 0.76795 0.83024 0.79993 1.19148 1.22524 1.17015 1.21234 1.05498 0.97511 1.00632 0.94122 0.89827 0.94223 0.92392 0.92455 0.89824 0.88052 0.93040 0.89988 0.92020 0.76743 0.88749 0.88408 0.88105 0.90652 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.39 -4.80 9.53 -35.23 -0.34 -5.14 16 3 C 0.04 0.51 6.28 37.16 0.23 0.74 16 4 C 0.14 1.79 5.81 -4.04 -0.02 1.76 16 5 N -0.63 -9.35 2.84 -187.34 -0.53 -9.88 16 6 C 0.08 0.90 10.06 59.85 0.60 1.50 16 7 C 0.70 13.78 8.12 -86.91 -0.71 13.08 16 8 O -0.56 -13.69 13.37 5.29 0.07 -13.61 16 9 N -0.68 -13.07 5.21 -14.27 -0.07 -13.15 16 10 C 0.18 4.20 6.29 -83.76 -0.53 3.68 16 11 C -0.26 -5.56 9.97 -39.10 -0.39 -5.95 16 12 C -0.07 -1.53 10.02 -39.69 -0.40 -1.92 16 13 C -0.22 -5.31 9.79 -38.84 -0.38 -5.69 16 14 C 0.10 2.72 5.13 -106.85 -0.55 2.17 16 15 C -0.44 -12.81 9.61 -37.74 -0.36 -13.17 16 16 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 17 C 0.09 2.45 5.47 -17.35 -0.09 2.35 16 18 N -0.82 -23.20 13.93 55.55 0.77 -22.43 16 19 Si 0.91 23.02 24.40 -169.99 -4.15 18.87 16 20 H -0.27 -6.91 6.68 56.52 0.38 -6.54 16 21 H -0.30 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.25 -6.28 6.66 56.52 0.38 -5.90 16 23 C -0.23 -6.03 5.62 -38.69 -0.22 -6.25 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.10 1.41 7.42 -51.93 -0.39 1.02 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.79 7.11 -51.93 -0.37 0.42 16 33 H 0.06 0.62 6.30 -51.93 -0.33 0.29 16 34 H 0.40 5.94 6.52 -40.82 -0.27 5.68 16 35 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 38 H 0.28 7.34 8.30 -40.82 -0.34 7.01 16 39 H 0.13 3.52 2.58 -52.48 -0.14 3.38 16 LS Contribution 320.27 15.07 4.83 4.83 Total: -1.00 -33.68 320.27 -6.43 -40.11 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.31 Total: 6.67 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.70 Total: -6.28 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.17 Total: -45.46 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.26 Total: -18.75 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.15 Total: 18.87 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.68 -6.43 -40.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455926412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.689 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds