Wall clock time and date at job start Tue Mar 31 2020 01:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99710 * 2 1 4 4 C 1.52999 * 109.47151 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46880 * 64.99727 * 4 3 2 6 6 C 1.46498 * 120.00462 * 270.00056 * 5 4 3 7 7 C 1.34779 * 119.99706 * 90.00455 * 5 4 3 8 8 O 1.21591 * 120.00228 * 359.97438 * 7 5 4 9 9 N 1.34778 * 119.99825 * 179.97438 * 7 5 4 10 10 C 1.39959 * 119.99848 * 184.65274 * 9 7 5 11 11 C 1.39289 * 119.94663 * 144.56359 * 10 9 7 12 12 C 1.38485 * 120.43050 * 179.97438 * 11 10 9 13 13 C 1.37682 * 120.32098 * 0.29287 * 12 11 10 14 14 C 1.40750 * 119.88312 * 359.47894 * 13 12 11 15 15 C 1.41405 * 120.21204 * 180.26608 * 14 13 12 16 16 H 1.07998 * 120.00320 * 329.05055 * 15 14 13 17 17 C 1.39933 * 119.99942 * 149.04467 * 15 14 13 18 18 N 1.30826 * 120.00206 * 167.85885 * 17 15 14 19 19 Si 1.86806 * 120.00027 * 347.86041 * 17 15 14 20 20 H 1.48504 * 109.46861 * 92.66533 * 19 17 15 21 21 H 1.48498 * 109.47131 * 212.66837 * 19 17 15 22 22 H 1.48501 * 109.47099 * 332.66555 * 19 17 15 23 23 C 1.38238 * 119.94826 * 324.57914 * 10 9 7 24 24 H 1.09004 * 109.47076 * 59.99934 * 1 2 3 25 25 H 1.09002 * 109.46906 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47206 * 299.99779 * 1 2 3 27 27 H 1.09000 * 109.47150 * 59.99935 * 3 2 1 28 28 H 1.09004 * 109.47022 * 299.99837 * 3 2 1 29 29 H 1.09006 * 109.47241 * 305.00275 * 4 3 2 30 30 H 1.09000 * 109.47807 * 184.99658 * 4 3 2 31 31 H 1.09005 * 109.47236 * 270.00528 * 6 5 4 32 32 H 1.09000 * 109.46749 * 29.99782 * 6 5 4 33 33 H 1.08999 * 109.47387 * 149.99994 * 6 5 4 34 34 H 0.96993 * 120.00098 * 4.65731 * 9 7 5 35 35 H 1.08001 * 119.78336 * 359.97438 * 11 10 9 36 36 H 1.07998 * 119.84058 * 180.02562 * 12 11 10 37 37 H 1.07996 * 120.06224 * 179.72648 * 13 12 11 38 38 H 0.97000 * 120.00522 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.15902 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3404 7 6 4.2634 1.3330 -2.3200 8 8 4.1554 2.5418 -2.2460 9 7 4.6698 0.7620 -3.4713 10 6 5.0607 1.5634 -4.5500 11 6 6.0977 1.1505 -5.3831 12 6 6.4923 1.9353 -6.4537 13 6 5.8671 3.1364 -6.7027 14 6 4.8143 3.5644 -5.8723 15 6 4.1635 4.7941 -6.1251 16 1 4.7100 5.6132 -6.5686 17 6 2.8112 4.9496 -5.8007 18 7 2.2693 6.1404 -5.8087 19 14 1.7796 3.4570 -5.3561 20 1 1.7963 3.2647 -3.8836 21 1 0.3822 3.6675 -5.8121 22 1 2.3405 2.2524 -6.0190 23 6 4.4171 2.7637 -4.7868 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9785 2.1766 0.0901 31 1 5.1157 -1.1858 -1.0516 32 1 3.3859 -1.3631 -0.6713 33 1 3.9139 -1.2122 -2.3645 34 1 4.6913 -0.2043 -3.5522 35 1 6.5974 0.2121 -5.1929 36 1 7.2973 1.6057 -7.0938 37 1 6.1811 3.7473 -7.5361 38 1 1.3320 6.2483 -5.5835 39 1 3.6127 3.0847 -4.1415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455926412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:12 Heat of formation + Delta-G solvation = -63.526783 kcal Electronic energy + Delta-G solvation = -22065.582451 eV Core-core repulsion = 18779.783470 eV Total energy + Delta-G solvation = -3285.798981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.72796 -39.60044 -38.76430 -36.54354 -36.17959 -35.11871 -32.24996 -31.59858 -29.86467 -27.81888 -27.13904 -26.88852 -24.58913 -23.38616 -22.26942 -20.95660 -19.84901 -18.87239 -18.07148 -17.55055 -17.29247 -17.26014 -16.54075 -16.40282 -16.08568 -15.70123 -15.32874 -15.05434 -14.73490 -14.51494 -14.05776 -13.95972 -13.63520 -13.37705 -13.18172 -13.05838 -12.86972 -12.73404 -12.65310 -12.39916 -12.12062 -11.86409 -11.81808 -11.40049 -11.06010 -10.77222 -10.68801 -9.76971 -9.46060 -8.91596 -8.82440 -6.53382 0.67988 0.86263 1.17936 1.26644 1.34845 1.57138 2.04753 2.07168 2.61018 2.77039 2.93312 3.52349 4.01637 4.02945 4.23047 4.31008 4.37325 4.45033 4.49353 4.51748 4.56492 4.67617 4.75223 4.78013 4.81024 4.90778 4.92903 5.00288 5.01483 5.31102 5.45605 5.63080 5.75389 5.85759 5.89364 5.96477 6.10594 6.26644 6.40150 6.71966 6.84904 6.88710 7.49660 8.17885 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.006579 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.665980 B = 4255.208156 C = 5414.095830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.046 3.954 4 C 0.135 3.865 5 N -0.622 5.622 6 C 0.078 3.922 7 C 0.687 3.313 8 O -0.617 6.617 9 N -0.674 5.674 10 C 0.177 3.823 11 C -0.235 4.235 12 C -0.065 4.065 13 C -0.229 4.229 14 C 0.075 3.925 15 C -0.482 4.482 16 H 0.061 0.939 17 C 0.049 3.951 18 N -0.858 5.858 19 Si 0.968 3.032 20 H -0.286 1.286 21 H -0.278 1.278 22 H -0.249 1.249 23 C -0.252 4.252 24 H 0.026 0.974 25 H 0.106 0.894 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.015 0.985 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.419 0.581 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.107 0.893 38 H 0.290 0.710 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 -18.650 11.971 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.032 4.032 4 C 0.012 3.988 5 N -0.359 5.359 6 C -0.064 4.064 7 C 0.389 3.611 8 O -0.496 6.496 9 N -0.324 5.324 10 C 0.083 3.917 11 C -0.256 4.256 12 C -0.083 4.083 13 C -0.249 4.249 14 C 0.072 3.928 15 C -0.513 4.513 16 H 0.080 0.920 17 C -0.164 4.164 18 N -0.486 5.486 19 Si 0.795 3.205 20 H -0.213 1.213 21 H -0.205 1.205 22 H -0.173 1.173 23 C -0.273 4.273 24 H 0.044 0.956 25 H 0.124 0.876 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.034 0.966 29 H 0.141 0.859 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.259 0.741 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.704 -17.798 12.104 21.535 hybrid contribution -0.989 0.294 0.000 1.032 sum -1.694 -17.503 12.104 21.348 Atomic orbital electron populations 1.22901 0.80055 1.03957 1.00107 1.87785 1.20877 1.27404 1.95482 1.22993 0.94933 0.85110 1.00199 1.21539 0.91516 1.00421 0.85361 1.47071 1.70067 1.08067 1.10706 1.22004 1.03579 0.77250 1.03536 1.16298 0.78410 0.85106 0.81252 1.90972 1.60319 1.14617 1.83681 1.42552 1.68880 1.10142 1.10837 1.17491 0.94705 0.91528 0.88001 1.20662 1.00504 1.03953 1.00452 1.20916 0.98095 0.92992 0.96295 1.21290 1.02625 0.99219 1.01790 1.17852 0.92952 0.91776 0.90234 1.19489 0.95842 0.98274 1.37686 0.92047 1.26638 0.99499 0.98977 0.91254 1.69681 1.15275 1.24643 1.38958 0.85474 0.76459 0.80437 0.78152 1.21348 1.20469 1.17279 1.21224 1.06150 0.99435 1.00504 0.95557 0.87584 0.92666 0.90052 0.96641 0.85857 0.89869 0.90481 0.88510 0.91290 0.74117 0.83816 0.83591 0.87487 0.89993 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -8.86 9.53 -148.98 -1.42 -10.28 16 3 C 0.05 1.13 6.28 71.98 0.45 1.58 16 4 C 0.13 3.23 5.81 86.38 0.50 3.73 16 5 N -0.62 -17.10 2.84 -864.88 -2.45 -19.55 16 6 C 0.08 1.34 10.06 127.77 1.29 2.63 16 7 C 0.69 26.58 8.12 179.05 1.45 28.03 16 8 O -0.62 -30.95 13.37 -4.00 -0.05 -31.00 16 9 N -0.67 -24.03 5.21 -317.31 -1.65 -25.68 16 10 C 0.18 7.76 6.29 38.10 0.24 8.00 16 11 C -0.23 -8.70 9.97 22.58 0.23 -8.48 16 12 C -0.06 -2.47 10.02 22.20 0.22 -2.25 16 13 C -0.23 -10.87 9.79 22.75 0.22 -10.64 16 14 C 0.07 4.16 5.13 -21.31 -0.11 4.05 16 15 C -0.48 -29.65 9.61 23.46 0.23 -29.43 16 16 H 0.06 3.97 8.06 -2.91 -0.02 3.94 16 17 C 0.05 2.95 5.47 85.25 0.47 3.42 16 18 N -0.86 -51.86 13.93 21.82 0.30 -51.56 16 19 Si 0.97 50.19 24.40 68.60 1.67 51.86 16 20 H -0.29 -15.62 6.68 99.48 0.66 -14.96 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 22 H -0.25 -12.74 6.66 99.48 0.66 -12.08 16 23 C -0.25 -13.50 5.62 22.85 0.13 -13.38 16 24 H 0.03 0.53 8.14 -2.38 -0.02 0.52 16 25 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.02 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.12 1.99 8.07 -2.38 -0.02 1.97 16 30 H 0.08 2.32 7.42 -2.39 -0.02 2.30 16 31 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.10 1.44 7.11 -2.39 -0.02 1.43 16 33 H 0.07 1.09 6.30 -2.39 -0.02 1.08 16 34 H 0.42 10.79 6.52 -92.71 -0.60 10.19 16 35 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.15 4.27 8.06 -2.91 -0.02 4.24 16 37 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.29 15.91 8.30 -92.71 -0.77 15.14 16 39 H 0.10 5.98 2.58 -2.91 -0.01 5.97 16 Total: -1.00 -79.29 320.27 3.33 -75.96 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.37 Total: 21.27 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 6.56 Total: -11.02 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -3.80 Total: -96.79 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.47 Total: -41.28 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 1.67 Total: 51.86 kcal Total: -79.29 3.33 -75.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455926412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.430 kcal (2) G-P(sol) polarization free energy of solvation -79.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds